Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.2e-256 889.4 472 100.0
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 5.2e-143 511.9 479 62.4
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 9.4e-137 491.1 479 62.8
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.5e-105 387.5 474 54.4
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.3e-84 315.1 474 48.3
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 2.3e-82 310.5 348 52.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 5.1e-82 309.3 471 47.3
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 1.1e-81 308.1 435 48.3
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 3.3e-81 306.6 346 49.7
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 1.6e-80 304.3 465 45.6
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 3.1e-79 300.1 346 48.8
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 4.5e-78 296.2 374 46.0
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 5.8e-78 295.8 353 47.9
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 7.6e-78 295.4 393 48.1
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 2.4e-76 290.4 456 45.2
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 3.2e-76 290.0 344 50.0
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 2.1e-75 287.3 389 45.5
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 4.6e-75 286.2 420 48.1
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 7.9e-75 285.4 451 43.7
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 2.3e-74 283.9 466 43.6
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 5.1e-74 282.7 425 45.2
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 5.1e-74 282.7 531 40.9
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 1.1e-73 281.6 399 43.4
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 1.5e-73 281.2 396 48.0
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 5.6e-73 279.3 348 46.0
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 5.6e-73 279.3 421 44.7
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 5.6e-73 279.3 353 48.7
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 9.6e-73 278.5 404 44.1
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.8e-71 274.2 423 43.5
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 1.2e-70 271.6 419 42.7
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.5e-70 271.2 460 43.7
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.0e-70 270.8 572 38.5
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 4.5e-70 269.6 518 41.3
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 7.6e-70 268.9 374 47.9
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 3.8e-69 266.5 464 44.2
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 6.4e-69 265.8 433 40.6
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 7.1e-68 262.3 438 40.0
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 3.5e-67 260.0 413 42.9
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 1.8e-66 257.7 414 43.0
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.3e-66 257.3 423 42.3
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 3.0e-66 256.9 457 40.7
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 3.0e-66 256.9 396 41.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 3.9e-66 256.5 416 40.9
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 3.9e-66 256.5 509 37.5
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 6.7e-66 255.8 423 40.9
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.7e-66 255.8 416 40.9
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 6.7e-66 255.8 463 41.5
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 6.7e-66 255.8 401 42.1
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 8.7e-66 255.4 440 41.6
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 1.3e-64 251.5 416 43.8
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 2.1e-64 250.8 574 36.2
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 4.8e-64 249.6 356 47.2
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 8.2e-64 248.8 355 47.9
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.4e-63 247.3 411 39.2
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 4.0e-63 246.5 434 39.6
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 9.0e-63 245.4 566 37.5
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 9.0e-63 245.4 545 34.5
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 2.6e-62 243.8 571 35.0
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 1.0e-61 241.9 340 42.9
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 2.2e-61 240.7 503 36.4
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.9e-61 240.4 394 41.4
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 2.9e-61 240.4 425 37.2
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.9e-60 237.7 561 35.8
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 2.5e-60 237.3 419 41.3
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 3.2e-60 236.9 487 40.9
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.2e-59 235.0 450 39.8
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 1.6e-59 234.6 344 42.7
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 2.1e-59 234.2 342 44.2
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 2.7e-59 233.8 397 38.3
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.3e-58 231.5 292 47.9
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 6.7e-58 229.2 340 42.6
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 1.1e-57 228.4 343 44.9
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 7.4e-57 225.7 354 41.2
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.6e-56 224.6 345 42.3
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 6.9e-55 219.2 340 43.8
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 6.9e-55 219.2 340 43.8
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 9.0e-55 218.8 336 43.2
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.7e-53 214.5 346 42.5
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 2.2e-53 214.2 384 37.8
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 6.5e-53 212.6 535 35.3
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 3.2e-52 210.3 411 37.7
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 4.2e-52 209.9 428 38.3
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 9.4e-52 208.8 411 37.5
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 6.1e-51 206.1 278 50.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 3.9e-50 203.4 411 37.2
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 5.1e-50 203.0 411 36.7
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 1.1e-49 201.8 425 35.3
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 5.7e-49 199.5 431 35.7
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 7.4e-49 199.1 428 36.2
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 1.3e-48 198.4 428 36.0
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.3e-48 198.4 422 36.3
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 3.7e-48 196.8 419 35.8
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 1.4e-47 194.9 507 35.7
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 4.1e-47 193.4 421 35.9
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.1e-44 185.3 278 43.9
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 6.1e-43 179.5 269 44.6
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 6.7e-42 176.0 354 37.0
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 5.7e-41 172.9 272 43.0
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 3.7e-40 170.2 317 39.7
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 8.2e-40 169.1 350 36.6
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 4.2e-36 156.8 161 47.2
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 5.5e-36 156.4 163 47.2
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 2.0e-33 147.9 271 35.1
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 7.4e-33 146.0 155 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 2.2e-32 144.4 247 36.8
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 4.8e-32 143.3 179 44.1
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.0e-29 135.6 228 36.0
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 2.7e-27 127.5 236 31.8
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 3.4e-25 120.6 215 35.8
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 2.7e-19 100.9 70 67.1
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.1e-15 87.0 186 36.6
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.1e-15 87.0 116 44.8
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.7e-14 84.3 100 48.0
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 7.2e-12 76.3 54 61.1
QL03p062461 Quercus lobata HOM05D006873 ORTHO05D008668 5.7e-09 66.6 86 43.0
GSVIVG01020169001 Vitis vinifera HOM05D006873 ORTHO05D008668 3.5e-06 57.4 49 59.2


User provided reference genes

Program Settings