Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G056300 Carya illinoinensis HOM05D006110 ORTHO05D007774 0.0e+00 1211.8 608 100.0
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 0.0e+00 1148.3 608 93.8
QL04p021435 Quercus lobata HOM05D006110 ORTHO05D007774 0.0e+00 1114.4 608 91.6
QL07p029279 Quercus lobata HOM05D006110 ORTHO05D007774 0.0e+00 1114.4 608 91.6
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 0.0e+00 1091.3 608 89.8
Prupe.7G006200 Prunus persica HOM05D006110 ORTHO05D007774 1.6e-306 1055.4 610 86.6
Manes.04G156400 Manihot esculenta HOM05D006110 ORTHO05D007774 1.4e-305 1052.4 610 86.6
GSVIVG01036611001 Vitis vinifera HOM05D006110 ORTHO05D007774 6.6e-300 1033.5 609 84.6
Eucgr.E03954 Eucalyptus grandis HOM05D006110 ORTHO05D007774 9.5e-299 1029.6 611 84.0
GSVIVG01036631001 Vitis vinifera HOM05D006110 ORTHO05D007774 9.5e-299 1029.6 609 84.4
RcHm_v2.0_Chr1g0327151 Rosa chinensis HOM05D006110 ORTHO05D007774 1.6e-298 1028.9 614 84.0
CsaV3_5G023770 Cucumis sativus L. HOM05D006110 ORTHO05D007774 3.6e-298 1027.7 610 83.3
Atru.chr12.1309 Acer truncatum HOM05D006110 ORTHO05D007774 5.2e-297 1023.8 610 84.3
COL.COLO4_06638 Corchorus olitorius HOM05D006110 ORTHO05D007774 8.9e-297 1023.1 610 83.4
Dinv11233 Davidia involucrata HOM05D006110 ORTHO05D007774 1.2e-296 1022.7 585 86.0
Duzib106G1787 Durio zibethinus HOM05D006110 ORTHO05D007774 1.2e-296 1022.7 625 83.0
MELO3C022813.2 Cucumis melo HOM05D006110 ORTHO05D007774 1.5e-296 1022.3 610 83.0
Sed0024249 Sechium edule HOM05D006110 ORTHO05D007774 2.6e-296 1021.5 609 82.9
Ciclev10000631m.g Citrus clementina HOM05D006110 ORTHO05D007774 4.9e-295 1017.3 610 84.1
Glyma.04G133800 Glycine max HOM05D006110 ORTHO05D007774 3.5e-293 1011.1 609 82.9
FAN03G2625 Fragaria x ananassa HOM05D006110 ORTHO05D007774 1.0e-292 1009.6 607 83.4
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 1.7e-292 1008.8 609 82.4
CANSAT56G0825 Cannabis sativa HOM05D006110 ORTHO05D007774 2.8e-290 1001.5 617 81.7
Rhsim07G0069200 Rhododendron simsii HOM05D006110 ORTHO05D007774 3.6e-290 1001.1 649 77.5
Potri.001G031700 Populus trichocarpa HOM05D006110 ORTHO05D007774 4.7e-290 1000.7 610 83.3
MSTRG.16978 Avicennia marina HOM05D006110 ORTHO05D007774 8.1e-290 1000.0 608 81.1
Lj3g0023685 Lotus japonicus HOM05D006110 ORTHO05D007774 8.1e-290 1000.0 609 81.9
FvH4_7g03810 Fragaria vesca HOM05D006110 ORTHO05D007774 6.8e-289 996.9 609 82.4
MD14G1003800 Malus domestica HOM05D006110 ORTHO05D007774 2.0e-288 995.3 612 82.5
Potri.003G194000 Populus trichocarpa HOM05D006110 ORTHO05D007774 2.6e-288 995.0 610 82.1
FAN10G4343 Fragaria x ananassa HOM05D006110 ORTHO05D007774 4.9e-287 990.7 619 81.4
arahy.Tifrunner.gnm1.ann1.Y0U2QZ Arachis hypogaea HOM05D006110 ORTHO05D007774 1.1e-283 979.5 606 81.0
THA.LOC104826748 Tarenaya hassleriana HOM05D006110 ORTHO05D007774 3.3e-283 978.0 600 80.3
arahy.Tifrunner.gnm1.ann1.P4BN3A Arachis hypogaea HOM05D006110 ORTHO05D007774 9.5e-283 976.5 606 80.7
FAN06G2813 Fragaria x ananassa HOM05D006110 ORTHO05D007774 9.5e-283 976.5 634 78.9
Psat5g221960 Pisum sativum HOM05D006110 ORTHO05D007774 3.1e-281 971.5 601 80.5
Gohir.A05G399300 Gossypium hirsutum HOM05D006110 ORTHO05D007774 1.2e-280 969.5 612 79.9
Gorai.012G019300 Gossypium raimondii HOM05D006110 ORTHO05D007774 2.0e-280 968.8 612 79.6
Phvul.005G004500 Phaseolus vulgaris HOM05D006110 ORTHO05D007774 4.4e-280 967.6 609 79.5
EL10Ac7g17197 Beta vulgaris HOM05D006110 ORTHO05D007774 1.7e-279 965.7 609 79.0
TPR.G7074 Trifolium pratense HOM05D006110 ORTHO05D007774 8.4e-279 963.4 602 80.6
CAN.G134.27 Capsicum annuum HOM05D006110 ORTHO05D007774 1.2e-277 959.5 609 78.5
Peaxi162Scf00220g00411 Petunia axillaris HOM05D006110 ORTHO05D007774 2.1e-277 958.7 606 78.1
Lalb_Chr20g0109671 Lupinus albus HOM05D006110 ORTHO05D007774 3.3e-275 951.4 607 78.7
Lalb_Chr20g0109811 Lupinus albus HOM05D006110 ORTHO05D007774 9.6e-275 949.9 607 78.7
CSS0009585 Camellia sinensis var. sinensis HOM05D006110 ORTHO05D007774 3.6e-274 948.0 591 80.9
Gohir.D04G016600 Gossypium hirsutum HOM05D006110 ORTHO05D007774 6.2e-274 947.2 612 78.8
TAR625G0603 Trochodendron aralioides HOM05D006110 ORTHO05D007774 1.4e-273 946.0 584 80.8
Solyc01g096600.4 Solanum lycopersicum HOM05D006110 ORTHO05D007774 8.9e-273 943.3 610 77.5
Sopen01g040330 Solanum pennellii HOM05D006110 ORTHO05D007774 5.8e-272 940.6 610 77.2
Nn8g38623 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.6e-269 932.6 606 76.9
ECA233G5267 Erigeron canadensis HOM05D006110 ORTHO05D007774 2.7e-269 931.8 610 77.4
AL6G20270 Arabidopsis lyrata HOM05D006110 ORTHO05D007774 1.1e-267 926.4 601 76.5
MBI03_g05118_MAGBIO Magnolia biondii HOM05D006110 ORTHO05D007774 1.5e-267 926.0 589 78.6
COL.COLO4_19610 Corchorus olitorius HOM05D006110 ORTHO05D007774 1.9e-267 925.6 635 75.3
Sabra01G0022800 Salix brachista HOM05D006110 ORTHO05D007774 1.9e-267 925.6 781 64.9
AT5G09860 Arabidopsis thaliana HOM05D006110 ORTHO05D007774 2.5e-267 925.2 603 76.3
Actinidia07968 Actinidia chinensis HOM05D006110 ORTHO05D007774 3.3e-267 924.9 526 85.2
HanXRQChr02g0048711 Helianthus annuus HOM05D006110 ORTHO05D007774 4.3e-267 924.5 603 76.5
vmacro13769 Vaccinium macrocarpon HOM05D006110 ORTHO05D007774 5.6e-267 924.1 698 69.5
Aa31LG1G21560 Aethionema arabicum HOM05D006110 ORTHO05D007774 3.1e-265 918.3 619 74.5
CARHR203490 Cardamine hirsuta HOM05D006110 ORTHO05D007774 1.2e-264 916.4 601 77.0
Lsat_1_v5_gn_6_13001 Lactuca sativa HOM05D006110 ORTHO05D007774 5.4e-262 907.5 532 82.9
Carub.0006s0829 Capsella rubella HOM05D006110 ORTHO05D007774 1.2e-261 906.4 602 75.4
PGR031G3177 Punica granatum HOM05D006110 ORTHO05D007774 7.9e-261 903.7 576 79.2
ATR0618G428 Amborella trichopoda HOM05D006110 ORTHO05D007774 2.5e-259 898.7 590 76.6
A02p00200 Brassica napus HOM05D006110 ORTHO05D007774 2.5e-259 898.7 606 74.6
BcaB05g21524 Brassica carinata HOM05D006110 ORTHO05D007774 2.8e-258 895.2 610 74.3
Sc17g0003940 Simmondsia chinensis HOM05D006110 ORTHO05D007774 1.8e-257 892.5 551 79.9
Migut.B01193 Erythranthe guttata HOM05D006110 ORTHO05D007774 6.9e-257 890.6 617 72.0
Sp6g33550 Schrenkiella parvula HOM05D006110 ORTHO05D007774 9.0e-257 890.2 601 74.5
C02p04120 Brassica napus HOM05D006110 ORTHO05D007774 1.5e-256 889.4 620 72.4
BraA02t05004Z Brassica rapa HOM05D006110 ORTHO05D007774 7.6e-256 887.1 619 72.2
BolC2t06374H Brassica oleracea HOM05D006110 ORTHO05D007774 2.9e-255 885.2 624 71.8
Thhalv10013059m.g Eutrema salsugineum HOM05D006110 ORTHO05D007774 2.3e-252 875.5 600 74.2
Nn3g19142 Nelumbo nucifera HOM05D006110 ORTHO05D007774 1.9e-251 872.5 510 82.0
Aqoxy3G04239 Aquilegia oxysepala HOM05D006110 ORTHO05D007774 2.5e-251 872.1 589 75.6
PSO063G0799 Papaver somniferum HOM05D006110 ORTHO05D007774 8.1e-250 867.1 586 74.6
PSO782G1399 Papaver somniferum HOM05D006110 ORTHO05D007774 2.4e-249 865.5 586 74.7
BcaC03g13281 Brassica carinata HOM05D006110 ORTHO05D007774 5.3e-249 864.4 605 71.7
Oeu014626.1 Olea europaea HOM05D006110 ORTHO05D007774 9.6e-243 843.6 517 80.3
Ah.08g212940 Amaranthus hybridus HOM05D006110 ORTHO05D007774 3.4e-240 835.1 611 69.6
CDE05G1199 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.3e-235 818.5 580 71.0
AUR62033702 Chenopodium quinoa HOM05D006110 ORTHO05D007774 3.3e-235 818.5 740 60.1
SalBow5G1256 Salvia bowleyana HOM05D006110 ORTHO05D007774 3.3e-235 818.5 616 69.3
Os03g0110400 Oryza sativa ssp. japonica HOM05D006110 ORTHO05D007774 1.8e-233 812.8 591 69.2
Zm00001eb000780 Zea mays HOM05D006110 ORTHO05D007774 1.6e-229 799.7 531 74.2
Nitab4.5_0002838g0090 Nicotiana tabacum HOM05D006110 ORTHO05D007774 4.6e-229 798.1 520 76.9
Thecc.10G142600 Theobroma cacao HOM05D006110 ORTHO05D007774 2.0e-227 792.7 458 85.2
unitig_26.g9755 Utricularia gibba HOM05D006110 ORTHO05D007774 8.2e-226 787.3 588 69.7
SGA_v2.0_scaffold342G49409 Striga asiatica HOM05D006110 ORTHO05D007774 1.3e-223 780.0 665 64.7
AUR62036785 Chenopodium quinoa HOM05D006110 ORTHO05D007774 2.9e-215 752.3 609 65.5
Cc00_g06110 Coffea canephora HOM05D006110 ORTHO05D007774 8.8e-204 714.1 470 77.2
Mapoly0007s0076 Marchantia polymorpha HOM05D006110 ORTHO05D007774 1.3e-202 710.3 610 60.8
SMO134G0202 Selaginella moellendorffii HOM05D006110 ORTHO05D007774 3.7e-202 708.8 524 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3473 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.3e-199 700.3 611 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3474 Anthoceros agrestis HOM05D006110 ORTHO05D007774 1.4e-193 680.2 590 60.0
Pp3c2_4660 Physcomitrium patens HOM05D006110 ORTHO05D007774 2.4e-193 679.5 565 62.7
ClCG05G014210 Citrullus lanatus HOM05D006110 ORTHO05D007774 2.8e-189 666.0 451 74.7
TPR.G1403 Trifolium pratense HOM05D006110 ORTHO05D007774 6.6e-175 618.2 397 77.1
DCAR_022366 Daucus carota HOM05D006110 ORTHO05D007774 5.4e-161 572.0 386 73.3
HPP92_005051 Vanilla planifolia HOM05D006110 ORTHO05D007774 7.6e-139 498.4 334 74.6
Lj9C658T8 Lonicera japonica HOM05D006110 ORTHO05D007774 1.9e-134 483.8 287 84.3
Cpa.g.sc51.83 Carica papaya HOM05D006110 ORTHO05D007774 2.5e-134 483.4 270 83.3
SEGI_32708 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 5.5e-129 465.7 309 75.4
CBR_g45491 Chara braunii HOM05D006110 ORTHO05D007774 2.3e-127 460.3 566 46.6
Nitab4.5_0004168g0080 Nicotiana tabacum HOM05D006110 ORTHO05D007774 1.6e-112 411.0 351 63.2
Hund12548 Selenicereus undatus HOM05D006110 ORTHO05D007774 4.2e-105 386.3 284 70.4
Hund24435 Selenicereus undatus HOM05D006110 ORTHO05D007774 3.0e-95 353.6 258 70.5
HPP92_005075 Vanilla planifolia HOM05D006110 ORTHO05D007774 9.1e-92 342.0 285 61.8
Sed0017067 Sechium edule HOM05D006110 ORTHO05D007774 4.5e-91 339.7 188 85.6
Lj9A658T58 Lonicera japonica HOM05D006110 ORTHO05D007774 1.1e-84 318.5 226 76.1
CANSAT01G0073 Cannabis sativa HOM05D006110 ORTHO05D007774 1.0e-74 285.4 181 76.8
PRCOL_00001172 Prasinoderma coloniale HOM05D006110 ORTHO05D007774 1.5e-73 281.6 444 38.1
CDE05G0354 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 3.5e-59 233.8 374 40.1
Cc00_g06120 Coffea canephora HOM05D006110 ORTHO05D007774 2.3e-55 221.1 133 82.0
ClCG05G014240 Citrullus lanatus HOM05D006110 ORTHO05D007774 6.8e-55 219.5 189 65.1
Oeu014625.1 Olea europaea HOM05D006110 ORTHO05D007774 3.4e-54 217.2 160 73.1
CANSAT01G1515 Cannabis sativa HOM05D006110 ORTHO05D007774 1.9e-52 211.5 108 87.0
SEGI_24206 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 3.5e-51 207.2 175 61.7
CDE05G3545 Ceratophyllum demersum HOM05D006110 ORTHO05D007774 1.9e-49 201.4 137 75.2
Actinidia06221 Actinidia chinensis HOM05D006110 ORTHO05D007774 8.4e-45 186.0 175 63.4
SEGI_05467 Sequoiadendron giganteum HOM05D006110 ORTHO05D007774 1.5e-38 165.2 109 68.8
Lj9C658T10 Lonicera japonica HOM05D006110 ORTHO05D007774 3.1e-23 114.4 66 75.8
Cre16.g695300 Chlamydomonas reinhardtii HOM05D006110 ORTHO05D007774 4.0e-23 114.0 434 26.3
QL04p021235 Quercus lobata HOM05D006110 ORTHO05D011410 3.3e-09 67.8 47 83.0
GSVIVG01036616001 Vitis vinifera HOM05D006110 ORTHO05D007774 1.6e-08 65.5 64 64.1
TAR625G1023 Trochodendron aralioides HOM05D006110 ORTHO05D007774 8.2e-08 63.2 57 64.9


User provided reference genes

Program Settings