Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 3.7e-196 688.7 563 100.0
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 1.6e-154 550.4 559 87.3
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 1.7e-153 547.0 560 84.3
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 2.3e-153 546.6 563 86.0
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.4e-150 537.3 558 82.8
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 2.6e-149 533.1 560 84.3
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 6.4e-148 528.5 560 84.3
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 7.8e-146 521.5 562 82.6
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 7.8e-146 521.5 661 58.5
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 1.0e-145 521.2 560 82.1
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 3.9e-145 519.2 558 81.0
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.5e-144 517.3 562 82.9
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 1.9e-144 516.9 557 81.0
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 2.5e-144 516.5 562 83.5
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 3.3e-144 516.2 560 81.2
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 4.0e-142 509.2 561 78.8
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 2.2e-140 503.4 561 79.7
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 4.9e-140 502.3 561 79.3
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.4e-139 500.7 558 80.6
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 2.1e-138 496.9 572 80.2
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.5e-136 490.0 561 81.1
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 9.9e-133 478.0 559 78.5
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 4.9e-132 475.7 576 77.4
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.4e-131 474.2 559 77.8
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.4e-131 473.4 561 77.7
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 1.2e-130 471.1 558 78.7
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 6.6e-129 465.3 529 80.2
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 1.1e-128 464.5 534 80.5
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 7.3e-128 461.8 557 76.7
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 9.6e-128 461.5 563 74.6
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.2e-127 461.1 561 74.7
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 4.7e-127 459.1 561 71.8
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 4.7e-127 459.1 557 76.3
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 2.4e-126 456.8 561 73.4
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 6.8e-126 455.3 561 71.5
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 6.8e-126 455.3 559 77.8
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 6.8e-126 455.3 560 79.5
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 8.9e-126 454.9 561 71.5
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 1.2e-125 454.5 561 73.3
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 1.5e-125 454.1 560 75.2
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 4.4e-125 452.6 557 76.1
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 2.2e-124 450.3 557 73.2
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 8.4e-124 448.4 561 73.1
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 1.1e-123 448.0 560 74.6
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 7.1e-123 445.3 561 70.8
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 1.6e-122 444.1 556 76.4
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 2.7e-122 443.4 562 77.8
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 2.5e-120 436.8 557 76.3
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 4.3e-120 436.0 556 75.5
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 4.3e-120 436.0 558 73.8
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 7.6e-117 425.2 556 76.8
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 8.4e-116 421.8 570 75.6
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 4.2e-115 419.5 558 64.7
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.6e-114 417.5 558 75.3
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 2.1e-114 417.2 562 77.2
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 7.8e-114 415.2 562 72.1
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 8.7e-113 411.8 544 76.7
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.3e-111 407.9 563 68.7
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 8.1e-111 405.2 531 75.3
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 2.0e-109 400.6 558 75.1
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 4.2e-107 392.9 559 75.1
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.3e-105 387.9 562 70.8
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 7.4e-104 382.1 556 75.5
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 9.6e-104 381.7 556 75.5
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 2.1e-103 380.6 215 87.4
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 4.0e-102 376.3 556 71.9
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 1.8e-94 350.9 556 71.4
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 1.2e-93 348.2 558 63.3
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 7.6e-93 345.5 217 79.3
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 5.0e-92 342.8 217 78.3
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 2.5e-91 340.5 520 72.3
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 2.3e-89 334.0 562 70.6
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 3.9e-89 333.2 558 64.0
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 4.3e-88 329.7 218 73.4
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 1.3e-87 328.2 538 45.5
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 1.2e-85 321.6 558 63.4
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 2.5e-83 313.9 563 66.3
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 2.3e-81 307.4 218 70.6
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.3e-80 303.1 219 70.8
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.4e-78 298.1 196 75.0
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 1.4e-78 298.1 558 66.8
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 5.3e-78 296.2 558 66.8
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 9.1e-78 295.4 561 67.4
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 3.3e-72 276.9 530 69.4
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 5.9e-69 266.2 167 77.8
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 3.0e-65 253.8 181 79.6
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 6.3e-63 246.1 488 70.5
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 4.0e-49 200.3 168 72.0
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 3.8e-44 183.7 181 45.9
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 5.6e-43 179.9 180 63.9
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 1.4e-41 175.3 124 73.4
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 5.2e-41 173.3 152 71.1
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 9.2e-38 162.5 110 72.7
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.9e-36 157.1 155 65.2
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 3.3e-35 154.1 179 58.7
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 2.4e-22 111.3 113 68.1
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 6.2e-18 96.7 65 72.3
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 4.0e-17 94.0 70 61.4
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 1.6e-13 82.0 88 38.6
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 3.9e-12 77.4 47 76.6
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 4.7e-10 70.5 177 23.7
COL.COLO4_29977 Corchorus olitorius HOM05D003056 ORTHO05D003422 5.8e-08 63.5 177 22.0
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 1.7e-07 62.0 182 22.5
TPR.G37938 Trifolium pratense HOM05D005862 ORTHO05D007731 4.9e-07 60.5 122 28.7
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 6.4e-07 60.1 116 23.3
AUR62021315 Chenopodium quinoa HOM05D003056 ORTHO05D003422 8.4e-07 59.7 115 27.0
AUR62033232 Chenopodium quinoa HOM05D003056 ORTHO05D003422 8.4e-07 59.7 115 27.0
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 8.4e-07 59.7 82 42.7
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 8.4e-07 59.7 167 23.4
Potri.017G036400 Populus trichocarpa HOM05D005862 ORTHO05D007731 8.4e-07 59.7 103 30.1
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 1.1e-06 59.3 121 24.0
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.4e-06 58.9 106 31.1
Gohir.D11G144900 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.4e-06 58.9 106 31.1
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 1.4e-06 58.9 106 31.1
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.4e-06 58.2 182 20.3
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.4e-06 58.2 182 20.3
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 2.4e-06 58.2 182 20.3
Lsat_1_v5_gn_7_53500 Lactuca sativa HOM05D003056 ORTHO05D003422 2.4e-06 58.2 180 21.1
Sopen07g006580 Solanum pennellii HOM05D003056 ORTHO05D003422 2.4e-06 58.2 182 21.4
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 3.2e-06 57.8 179 20.1
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 3.2e-06 57.8 179 20.1
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 3.2e-06 57.8 182 20.3
Gohir.A02G138900 Gossypium hirsutum HOM05D005862 ORTHO05D007731 3.2e-06 57.8 117 26.5
Gohir.D03G049400 Gossypium hirsutum HOM05D005862 ORTHO05D007731 3.2e-06 57.8 117 26.5
Gorai.003G050800 Gossypium raimondii HOM05D005862 ORTHO05D007731 3.2e-06 57.8 117 26.5
TWI60G0141 Tripterygium wilfordii HOM05D005862 ORTHO05D007731 3.2e-06 57.8 105 28.6
CANSAT35G0239 Cannabis sativa HOM05D001779 ORTHO05D001753 4.2e-06 57.4 106 31.1
Ciclev10019744m.g Citrus clementina HOM05D001779 ORTHO05D001753 4.2e-06 57.4 105 31.4
Potri.007G123900 Populus trichocarpa HOM05D005862 ORTHO05D007731 4.2e-06 57.4 117 27.4
PGSC0003DMG400004093 Solanum tuberosum HOM05D003056 ORTHO05D003422 4.2e-06 57.4 182 20.9
CiPaw.08G043700 Carya illinoinensis HOM05D005862 ORTHO05D007731 5.4e-06 57.0 106 27.4
COL.COLO4_08905 Corchorus olitorius HOM05D005862 ORTHO05D007731 5.4e-06 57.0 119 27.7
HanXRQChr11g0346401 Helianthus annuus HOM05D002986 ORTHO05D007611 5.4e-06 57.0 116 27.6
Oeu055444.1 Olea europaea HOM05D005862 ORTHO05D007731 5.4e-06 57.0 103 31.1
Solyc07g017760.1 Solanum lycopersicum HOM05D003056 ORTHO05D003422 5.4e-06 57.0 182 21.4
Sopen03g027570 Solanum pennellii HOM05D005862 ORTHO05D007731 5.4e-06 57.0 103 30.1
Mapoly0063s0054 Marchantia polymorpha HOM05D003056 ORTHO05D003422 7.1e-06 56.6 157 21.7
QL02p098354 Quercus lobata HOM05D003056 ORTHO05D003422 7.1e-06 56.6 182 20.3
Atru.chr12.2038 Acer truncatum HOM05D005862 ORTHO05D007731 9.3e-06 56.2 113 28.3
CANSAT11G0661 Cannabis sativa HOM05D003056 ORTHO05D003422 9.3e-06 56.2 115 24.3
CANSAT11G1786 Cannabis sativa HOM05D005862 ORTHO05D007731 9.3e-06 56.2 103 30.1
CAN.G303.67 Capsicum annuum HOM05D005862 ORTHO05D007731 9.3e-06 56.2 103 29.1
Cpa.g.sc95.42 Carica papaya HOM05D003056 ORTHO05D003422 9.3e-06 56.2 124 29.0
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 9.3e-06 56.2 182 21.4
FvH4_2g36670 Fragaria vesca HOM05D007251 ORTHO05D009266 9.3e-06 56.2 125 31.2
Lalb_Chr03g0025511 Lupinus albus HOM05D000001 ORTHO05D000003 9.3e-06 56.2 58 41.4
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 9.3e-06 56.2 150 23.3
Sabra07G0100300 Salix brachista HOM05D005862 ORTHO05D007731 9.3e-06 56.2 117 27.4


User provided reference genes

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