Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G162100 Carya illinoinensis HOM05D001605 ORTHO05D013937 1.8e-75 285.8 139 100.0
CiPaw.01G266900 Carya illinoinensis HOM05D001605 ORTHO05D007904 1.8e-27 126.3 118 58.5
Cfa001787 Carpinus fangiana HOM05D001605 ORTHO05D007904 2.0e-18 96.3 85 54.1
QL08p053377 Quercus lobata HOM05D001605 ORTHO05D007904 9.9e-18 94.0 135 43.0
Manes.07G094600 Manihot esculenta HOM05D001605 ORTHO05D007904 2.9e-17 92.4 119 41.2
Peaxi162Scf00145g00221 Petunia axillaris HOM05D001605 ORTHO05D007904 3.8e-17 92.0 119 42.0
Ciclev10030480m.g Citrus clementina HOM05D001605 ORTHO05D007904 8.4e-17 90.9 118 43.2
Dinv31241 Davidia involucrata HOM05D001605 ORTHO05D007904 2.4e-16 89.4 118 41.5
Sabra08G0021700 Salix brachista HOM05D001605 ORTHO05D007904 3.2e-16 89.0 119 42.0
Thecc.10G086900 Theobroma cacao HOM05D001605 ORTHO05D007904 5.4e-16 88.2 119 40.3
Atru.chr12.877 Acer truncatum HOM05D001605 ORTHO05D007904 9.3e-16 87.4 85 50.6
Psat6g230120 Pisum sativum HOM05D001605 ORTHO05D007904 9.3e-16 87.4 119 41.2
GSVIVG01016203001 Vitis vinifera HOM05D001605 ORTHO05D007904 9.3e-16 87.4 72 55.6
Potri.008G032800 Populus trichocarpa HOM05D001605 ORTHO05D007904 1.2e-15 87.0 119 41.2
Phvul.007G024600 Phaseolus vulgaris HOM05D001605 ORTHO05D007904 1.6e-15 86.7 119 39.5
Sc09g0005960 Simmondsia chinensis HOM05D001605 ORTHO05D007904 1.6e-15 86.7 72 56.9
HPP92_015889 Vanilla planifolia HOM05D001605 ORTHO05D007904 1.6e-15 86.7 110 46.4
HPP92_015895 Vanilla planifolia HOM05D001605 ORTHO05D007904 1.6e-15 86.7 110 46.4
Glyma.20G112800 Glycine max HOM05D001605 ORTHO05D007904 2.7e-15 85.9 119 40.3
Glyma.10G276900 Glycine max HOM05D001605 ORTHO05D007904 3.5e-15 85.5 119 39.5
Potri.010G228766 Populus trichocarpa HOM05D001605 ORTHO05D007904 3.5e-15 85.5 118 41.5
Lj2A22T71 Lonicera japonica HOM05D001605 ORTHO05D007904 4.6e-15 85.1 67 56.7
Solyc11g008150.3 Solanum lycopersicum HOM05D001605 ORTHO05D007904 4.6e-15 85.1 119 39.5
Sopen11g003960 Solanum pennellii HOM05D001605 ORTHO05D007904 4.6e-15 85.1 119 39.5
unitig_37.g12317 Utricularia gibba HOM05D001605 ORTHO05D007904 4.6e-15 85.1 118 38.1
COL.COLO4_09867 Corchorus olitorius HOM05D001605 ORTHO05D007904 1.0e-14 84.0 72 52.8
ECA238G1123 Erigeron canadensis HOM05D001605 ORTHO05D007904 1.0e-14 84.0 118 39.0
ClCG08G007840 Citrullus lanatus HOM05D001605 ORTHO05D007904 1.7e-14 83.2 72 52.8
CsaV3_2G021080 Cucumis sativus L. HOM05D001605 ORTHO05D007904 1.7e-14 83.2 72 54.2
Nitab4.5_0002285g0040 Nicotiana tabacum HOM05D001605 ORTHO05D007904 3.0e-14 82.4 119 38.7
RcHm_v2.0_Chr1g0362241 Rosa chinensis HOM05D001605 ORTHO05D007904 3.0e-14 82.4 118 39.8
Zm00001eb292250 Zea mays HOM05D001605 ORTHO05D007904 3.0e-14 82.4 90 45.6
Actinidia18543 Actinidia chinensis HOM05D001605 ORTHO05D007904 5.1e-14 81.6 118 39.0
CSS0045023 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D007904 5.1e-14 81.6 72 54.2
Eucgr.J01043 Eucalyptus grandis HOM05D001605 ORTHO05D007904 5.1e-14 81.6 72 50.0
SGA_v2.0_scaffold62G21379 Striga asiatica HOM05D001605 ORTHO05D007904 5.1e-14 81.6 119 38.7
vmacro10246 Vaccinium macrocarpon HOM05D001807 ORTHO05D002044 6.6e-14 81.3 118 39.0
CAN.G459.35 Capsicum annuum HOM05D001605 ORTHO05D007904 8.7e-14 80.9 122 39.3
Duzib114G0274 Durio zibethinus HOM05D001605 ORTHO05D007904 8.7e-14 80.9 72 50.0
Cc02_g10740 Coffea canephora HOM05D001605 ORTHO05D007904 1.1e-13 80.5 119 38.7
Gohir.A10G201000 Gossypium hirsutum HOM05D001605 ORTHO05D007904 1.1e-13 80.5 72 51.4
Gohir.D10G208651 Gossypium hirsutum HOM05D001605 ORTHO05D007904 1.1e-13 80.5 72 51.4
Gorai.011G234600 Gossypium raimondii HOM05D001605 ORTHO05D007904 1.1e-13 80.5 72 51.4
HanXRQChr14g0456521 Helianthus annuus HOM05D001605 ORTHO05D007904 1.1e-13 80.5 85 44.7
Sed0007773 Sechium edule HOM05D001605 ORTHO05D007904 1.1e-13 80.5 76 52.6
Lalb_Chr06g0166251 Lupinus albus HOM05D001605 ORTHO05D007904 1.5e-13 80.1 119 37.0
Nitab4.5_0004987g0010 Nicotiana tabacum HOM05D001605 ORTHO05D007904 1.5e-13 80.1 119 37.8
Zm00001eb352910 Zea mays HOM05D001605 ORTHO05D007904 1.5e-13 80.1 90 45.6
MD01G1100800 Malus domestica HOM05D001605 ORTHO05D007904 1.9e-13 79.7 121 40.5
SalBow4G1337 Salvia bowleyana HOM05D001605 ORTHO05D007904 1.9e-13 79.7 118 38.1
DCAR_006401 Daucus carota HOM05D001605 ORTHO05D007904 2.5e-13 79.3 71 50.7
Prupe.2G206300 Prunus persica HOM05D001605 ORTHO05D007904 2.5e-13 79.3 119 41.2
THA.LOC104816433 Tarenaya hassleriana HOM05D001605 ORTHO05D007904 4.3e-13 78.6 89 44.9
Lsat_1_v5_gn_2_112001 Lactuca sativa HOM05D001605 ORTHO05D007904 5.6e-13 78.2 85 42.4
AT5G04290 Arabidopsis thaliana HOM05D001605 ORTHO05D007904 7.3e-13 77.8 92 43.5
Migut.F01946 Erythranthe guttata HOM05D001605 ORTHO05D007904 7.3e-13 77.8 119 38.7
Lj5g0010311 Lotus japonicus HOM05D001605 ORTHO05D007904 7.3e-13 77.8 72 50.0
Nn2g13838 Nelumbo nucifera HOM05D001605 ORTHO05D007904 7.3e-13 77.8 119 35.3
Carub.0006s0324 Capsella rubella HOM05D001605 ORTHO05D007904 9.6e-13 77.4 71 53.5
FvH4_7g18411 Fragaria vesca HOM05D001605 ORTHO05D007904 9.6e-13 77.4 118 39.0
FAN01G1699 Fragaria x ananassa HOM05D001605 ORTHO05D007904 9.6e-13 77.4 118 39.0
FAN03G0306 Fragaria x ananassa HOM05D001605 ORTHO05D007904 9.6e-13 77.4 118 39.0
FAN06G2826 Fragaria x ananassa HOM05D001605 ORTHO05D007904 9.6e-13 77.4 118 39.0
FAN10G1517 Fragaria x ananassa HOM05D001605 ORTHO05D007904 9.6e-13 77.4 118 39.0
MD07G1167800 Malus domestica HOM05D001605 ORTHO05D007904 9.6e-13 77.4 72 54.2
TPR.G26273 Trifolium pratense HOM05D001605 ORTHO05D007904 9.6e-13 77.4 72 54.2
TWI15G0385 Tripterygium wilfordii HOM05D001605 ORTHO05D007904 9.6e-13 77.4 72 51.4
MBI01_g12684_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 1.3e-12 77.0 85 38.8
Ah.05g168450 Amaranthus hybridus HOM05D001605 ORTHO05D007904 1.6e-12 76.6 75 50.7
PGR044G1910 Punica granatum HOM05D001605 ORTHO05D007904 2.1e-12 76.3 123 36.6
Rhsim09G0146800 Rhododendron simsii HOM05D001605 ORTHO05D007904 2.1e-12 76.3 72 47.2
AL6G13920 Arabidopsis lyrata HOM05D001605 ORTHO05D007904 3.6e-12 75.5 72 51.4
vmacro07188 Vaccinium macrocarpon HOM05D001605 ORTHO05D007904 3.6e-12 75.5 129 37.2
TAR636G1950 Trochodendron aralioides HOM05D001605 ORTHO05D007904 4.8e-12 75.1 71 47.9
Medtr1g111560 Medicago truncatula HOM05D001605 ORTHO05D007904 6.2e-12 74.7 72 50.0
Rhsim03G0113100 Rhododendron simsii HOM05D001605 ORTHO05D007904 6.2e-12 74.7 129 36.4
arahy.Tifrunner.gnm1.ann1.MQG1NS Arachis hypogaea HOM05D001605 ORTHO05D007904 1.1e-11 73.9 72 45.8
arahy.Tifrunner.gnm1.ann1.NQY93W Arachis hypogaea HOM05D001605 ORTHO05D007904 1.1e-11 73.9 72 45.8
Ca_25646_v3 Cicer arietinum L. HOM05D001605 ORTHO05D007904 1.8e-11 73.2 71 49.3
EL10Ac7g16663 Beta vulgaris HOM05D001605 ORTHO05D007904 5.3e-11 71.6 76 46.1
CARHR208990 Cardamine hirsuta HOM05D001605 ORTHO05D007904 5.3e-11 71.6 72 48.6
Aa31LG1G21060 Aethionema arabicum HOM05D001605 ORTHO05D007904 6.9e-11 71.2 89 41.6
Thhalv10015856m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 9.0e-11 70.9 72 52.8
Sp6g38450 Schrenkiella parvula HOM05D001605 ORTHO05D007904 9.0e-11 70.9 72 50.0
DCAR_024079 Daucus carota HOM05D001605 ORTHO05D007904 1.5e-10 70.1 124 37.9
PSO063G0750 Papaver somniferum HOM05D001605 ORTHO05D007904 1.5e-10 70.1 62 51.6
PSO339G4771 Papaver somniferum HOM05D001605 ORTHO05D007904 1.5e-10 70.1 62 51.6
AUR62027342 Chenopodium quinoa HOM05D001605 ORTHO05D007904 4.4e-10 68.6 75 41.3
BraA10t45232Z Brassica rapa HOM05D001605 ORTHO05D007904 7.6e-10 67.8 72 47.2
C09p72590 Brassica napus HOM05D001605 ORTHO05D007904 9.9e-10 67.4 72 45.8
BolC9t59999H Brassica oleracea HOM05D001605 ORTHO05D007904 9.9e-10 67.4 72 45.8
Hund17736 Selenicereus undatus HOM05D001605 ORTHO05D007904 9.9e-10 67.4 76 42.1
A10p31880 Brassica napus HOM05D001605 ORTHO05D007904 1.3e-09 67.0 72 47.2
BcaC06g32133 Brassica carinata HOM05D001605 ORTHO05D007904 6.4e-09 64.7 72 45.8
Thhalv10015730m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 2.4e-08 62.8 71 49.3
Actinidia38878 Actinidia chinensis HOM05D001605 ORTHO05D013937 9.3e-08 60.8 79 39.2
Aqoxy2G01687_Aqoxy2G01688 Aquilegia oxysepala HOM05D001605 ORTHO05D007904 3.0e-06 55.8 66 43.9


User provided reference genes

Program Settings