Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.03G019300 Carya illinoinensis HOM05D004901 ORTHO05D005592 0.0e+00 1202.2 635 100.0
Cfa008133 Carpinus fangiana HOM05D004901 ORTHO05D005592 3.4e-214 748.8 646 68.6
QL09p004928 Quercus lobata HOM05D004901 ORTHO05D005592 3.9e-194 682.2 646 61.9
Prupe.1G551100 Prunus persica HOM05D004901 ORTHO05D005592 1.5e-142 510.8 627 51.4
MD15G1404400 Malus domestica HOM05D004901 ORTHO05D005592 4.0e-130 469.5 637 47.7
Atru.chr13.2408 Acer truncatum HOM05D004901 ORTHO05D005592 8.8e-130 468.4 647 48.1
Haze_13904 Corylus avellana HOM05D004901 ORTHO05D005592 1.2e-129 468.0 402 67.7
Ciclev10000033m.g Citrus clementina HOM05D004901 ORTHO05D005592 3.3e-129 466.5 636 47.6
RcHm_v2.0_Chr7g0228871 Rosa chinensis HOM05D004901 ORTHO05D005592 7.0e-127 458.8 638 48.7
FvH4_7g03750 Fragaria vesca HOM05D004901 ORTHO05D005592 1.0e-125 454.9 644 47.0
FAN06G0910 Fragaria x ananassa HOM05D004901 ORTHO05D005592 2.9e-125 453.4 644 47.0
FAN03G3444 Fragaria x ananassa HOM05D004901 ORTHO05D005592 1.8e-122 444.1 645 47.3
GSVIVG01034779001 Vitis vinifera HOM05D004901 ORTHO05D005592 3.7e-120 436.4 639 45.5
Potri.013G109600 Populus trichocarpa HOM05D004901 ORTHO05D005592 1.5e-116 424.5 633 46.6
Manes.18G103400 Manihot esculenta HOM05D004901 ORTHO05D005592 2.1e-115 420.6 645 44.7
Duzib177G0087 Durio zibethinus HOM05D004901 ORTHO05D005592 2.9e-109 400.2 649 44.7
TAR628G1246 Trochodendron aralioides HOM05D004901 ORTHO05D005592 4.0e-106 389.8 699 44.2
Gohir.D13G124700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 1.5e-100 371.3 634 43.1
Gohir.A13G120700 Gossypium hirsutum HOM05D004901 ORTHO05D005592 1.4e-98 364.8 631 42.9
Gorai.013G139300 Gossypium raimondii HOM05D004901 ORTHO05D005592 1.4e-98 364.8 651 41.9
CANSAT56G0037 Cannabis sativa HOM05D004901 ORTHO05D005592 1.8e-98 364.4 635 43.1
Dinv02586 Davidia involucrata HOM05D004901 ORTHO05D005592 2.0e-97 360.9 561 46.0
Lj7C288T6 Lonicera japonica HOM05D004901 ORTHO05D005592 5.6e-84 316.2 646 38.9
Nn5g27609 Nelumbo nucifera HOM05D004901 ORTHO05D005592 1.5e-81 308.1 757 36.9
COL.COLO4_12801 Corchorus olitorius HOM05D004901 ORTHO05D005592 3.4e-81 307.0 824 34.2
Rhsim11G0056100 Rhododendron simsii HOM05D004901 ORTHO05D005592 1.4e-74 285.0 528 42.4
Oeu021225.1 Olea europaea HOM05D004901 ORTHO05D005592 1.2e-73 282.0 628 37.4
Glyma.08G238200 Glycine max HOM05D004901 ORTHO05D005592 5.8e-73 279.6 564 37.9
vmacro00755 Vaccinium macrocarpon HOM05D004901 ORTHO05D005592 5.8e-73 279.6 532 42.1
Eucgr.F02585 Eucalyptus grandis HOM05D004901 ORTHO05D005592 7.6e-73 279.3 628 36.5
Sed0000511 Sechium edule HOM05D004901 ORTHO05D005592 6.4e-72 276.2 609 36.3
Lj3g0009157 Lotus japonicus HOM05D004901 ORTHO05D005592 1.1e-71 275.4 563 37.7
Peaxi162Scf00391g00532 Petunia axillaris HOM05D004901 ORTHO05D005592 5.4e-71 273.1 621 37.2
TPR.G26106 Trifolium pratense HOM05D004901 ORTHO05D005592 9.3e-71 272.3 589 38.5
DCAR_011526 Daucus carota HOM05D004901 ORTHO05D005592 2.7e-70 270.8 644 35.4
Cpa.g.sc66.23 Carica papaya HOM05D004901 ORTHO05D005592 1.7e-69 268.1 449 42.1
Nitab4.5_0003010g0040 Nicotiana tabacum HOM05D004901 ORTHO05D005592 1.1e-68 265.4 595 37.3
THA.LOC104816395 Tarenaya hassleriana HOM05D004901 ORTHO05D005592 1.1e-68 265.4 648 36.6
PGR042G2824 Punica granatum HOM05D004901 ORTHO05D005592 2.5e-68 264.2 653 34.2
Thecc.08G186400 Theobroma cacao HOM05D004901 ORTHO05D005592 7.3e-68 262.7 441 41.5
Ca_19714_v3 Cicer arietinum L. HOM05D004901 ORTHO05D005592 1.6e-67 261.5 580 37.8
MBI17_g21472_MAGBIO Magnolia biondii HOM05D004901 ORTHO05D005592 1.7e-64 251.5 668 34.6
Psat0s1585g0040 Pisum sativum HOM05D004901 ORTHO05D005592 2.2e-64 251.1 579 37.5
Lalb_Chr01g0000031 Lupinus albus HOM05D004901 ORTHO05D005592 6.4e-64 249.6 568 37.7
Solyc11g020770.3 Solanum lycopersicum HOM05D004901 ORTHO05D005592 1.1e-63 248.8 627 35.6
Sopen11g010870 Solanum pennellii HOM05D004901 ORTHO05D005592 2.4e-63 247.7 651 35.0
Sc23g0001370 Simmondsia chinensis HOM05D004901 ORTHO05D005592 2.7e-62 244.2 612 35.6
VMungo1127G1203 Vigna mungo HOM05D004901 ORTHO05D005592 1.3e-61 241.9 506 37.5
CAN.G259.2 Capsicum annuum HOM05D004901 ORTHO05D005592 2.3e-61 241.1 623 35.5
AT1G35530 Arabidopsis thaliana HOM05D004901 ORTHO05D005592 6.7e-61 239.6 683 34.1
MELO3C008073.2 Cucumis melo HOM05D004901 ORTHO05D005592 1.5e-60 238.4 568 35.9
Phvul.011G000500 Phaseolus vulgaris HOM05D004901 ORTHO05D005592 1.9e-60 238.0 572 35.1
Carub.0001s3315 Capsella rubella HOM05D004901 ORTHO05D005592 3.3e-60 237.3 657 33.8
ClCG11G008660 Citrullus lanatus HOM05D004901 ORTHO05D005592 4.3e-60 236.9 596 35.1
CSS0009856 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 1.6e-59 235.0 441 42.0
Migut.C01287 Erythranthe guttata HOM05D004901 ORTHO05D005592 2.1e-59 234.6 634 34.2
Medtr1g103260 Medicago truncatula HOM05D004901 ORTHO05D005592 2.4e-58 231.1 503 37.6
Nitab4.5_0000167g0270 Nicotiana tabacum HOM05D004901 ORTHO05D005592 7.6e-57 226.1 688 32.7
A05p23720 Brassica napus HOM05D004901 ORTHO05D005592 4.9e-56 223.4 649 34.2
Thhalv10001810m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 5.5e-55 219.9 657 33.5
Thhalv10002370m.g Eutrema salsugineum HOM05D004901 ORTHO05D005592 9.3e-55 219.2 648 33.8
Aqoxy6G00145 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 1.2e-54 218.8 669 35.0
MSTRG.1544 Avicennia marina HOM05D004901 ORTHO05D005592 6.0e-54 216.5 599 33.9
BcaC05g27729 Brassica carinata HOM05D004901 ORTHO05D005592 1.9e-52 211.5 658 32.4
C05p37130 Brassica napus HOM05D004901 ORTHO05D005592 1.9e-52 211.5 658 32.4
Hund16786 Selenicereus undatus HOM05D004901 ORTHO05D005592 2.5e-52 211.1 464 36.2
SGA_v2.0_scaffold24G10583 Striga asiatica HOM05D004901 ORTHO05D005592 7.4e-52 209.5 618 32.5
SalBow7G4726 Salvia bowleyana HOM05D004901 ORTHO05D005592 2.1e-51 208.0 608 33.7
ECA233G3640 Erigeron canadensis HOM05D004901 ORTHO05D000001 2.8e-51 207.6 622 33.8
BraA05t21240Z Brassica rapa HOM05D004901 ORTHO05D005592 4.8e-51 206.8 689 31.6
Sp1g30300 Schrenkiella parvula HOM05D004901 ORTHO05D005592 1.4e-50 205.3 661 32.1
BcaB03g13661 Brassica carinata HOM05D004901 ORTHO05D005592 2.4e-50 204.5 664 32.5
Lsat_1_v5_gn_8_141780 Lactuca sativa HOM05D004901 ORTHO05D005592 4.0e-50 203.8 604 33.4
BolC5t32466H Brassica oleracea HOM05D004901 ORTHO05D005592 6.9e-50 203.0 699 30.8
PSO170G4536 Papaver somniferum HOM05D004901 ORTHO05D005592 9.0e-50 202.6 690 31.9
PSO782G5557 Papaver somniferum HOM05D004901 ORTHO05D005592 1.2e-49 202.2 679 31.7
Prupe.2G019600 Prunus persica HOM05D004901 ORTHO05D005592 4.5e-49 200.3 385 38.7
AL1G50380 Arabidopsis lyrata HOM05D004901 ORTHO05D005592 2.9e-48 197.6 675 31.4
arahy.Tifrunner.gnm1.ann1.CA6GZM Arachis hypogaea HOM05D004901 ORTHO05D005592 3.8e-48 197.2 502 35.1
CARHR034280 Cardamine hirsuta HOM05D004901 ORTHO05D005592 5.5e-47 193.4 649 31.4
arahy.Tifrunner.gnm1.ann1.0Z9JWZ Arachis hypogaea HOM05D004901 ORTHO05D005592 9.3e-47 192.6 502 35.3
Cc00_g06540 Coffea canephora HOM05D004901 ORTHO05D005592 2.3e-45 188.0 586 32.6
Aa31LG6G8790 Aethionema arabicum HOM05D004901 ORTHO05D005592 3.2e-39 167.5 576 32.6
HanXRQChr17g0559191 Helianthus annuus HOM05D004901 ORTHO05D005592 4.2e-39 167.2 598 31.8
AUR62023519 Chenopodium quinoa HOM05D004901 ORTHO05D005592 1.1e-36 159.1 336 38.7
CDE04G3479 Ceratophyllum demersum HOM05D004901 ORTHO05D005592 1.5e-36 158.7 641 30.7
Prupe.2G019700 Prunus persica HOM05D004901 ORTHO05D005592 9.7e-36 156.0 198 50.5
CsaV3_2G033030 Cucumis sativus L. HOM05D004901 ORTHO05D005592 2.0e-33 148.3 339 34.5
Ah.04g162840 Amaranthus hybridus HOM05D004901 ORTHO05D005592 5.9e-33 146.7 521 30.9
SHI09022 Sapria himalayana HOM05D004901 ORTHO05D005592 1.0e-32 146.0 525 32.2
ATR0749G100 Amborella trichopoda HOM05D004901 ORTHO05D005592 4.7e-30 137.1 618 28.2
EL10Ac1g00109 Beta vulgaris HOM05D004901 ORTHO05D005592 1.5e-28 132.1 501 29.9
HPP92_004438 Vanilla planifolia HOM05D004901 ORTHO05D005592 4.1e-26 124.0 666 29.9
CSS0042276 Camellia sinensis var. sinensis HOM05D004901 ORTHO05D005592 2.2e-24 118.2 183 50.3
Hma1.2p1_0503F.1_g168030 Hydrangea macrophylla HOM05D004901 ORTHO05D005592 7.4e-20 103.2 189 45.5
Zm00001eb201140 Zea mays HOM05D004901 ORTHO05D005592 9.7e-20 102.8 612 27.1
unitig_747.g21475 Utricularia gibba HOM05D004901 ORTHO05D005592 3.5e-17 94.4 250 36.4
Aqoxy4G02415 Aquilegia oxysepala HOM05D004901 ORTHO05D005592 5.0e-16 90.5 372 30.6
Psat5g126920 Pisum sativum HOM05D004901 ORTHO05D005592 9.7e-12 76.3 139 43.2
Mapoly0001s0472 Marchantia polymorpha HOM05D004901 ORTHO05D005592 6.3e-11 73.6 333 25.5
Pp3c20_9530 Physcomitrium patens HOM05D004901 ORTHO05D005592 1.7e-08 65.5 319 28.5


User provided reference genes

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