Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 0.0e+00 1619.8 804 100.0
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 0.0e+00 1250.3 873 74.1
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 0.0e+00 1210.3 803 74.0
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 0.0e+00 1194.5 808 73.5
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 0.0e+00 1189.5 811 73.5
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1187.9 813 73.2
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 0.0e+00 1185.2 810 72.8
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 0.0e+00 1181.4 807 73.4
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 0.0e+00 1181.0 813 72.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 0.0e+00 1179.5 808 73.3
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 0.0e+00 1178.7 809 72.8
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 0.0e+00 1176.4 813 72.8
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 0.0e+00 1176.0 806 72.3
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 0.0e+00 1174.1 810 73.1
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 0.0e+00 1171.0 808 71.8
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 0.0e+00 1166.4 806 71.8
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1163.7 802 71.8
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1163.7 802 71.8
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 0.0e+00 1163.3 812 70.7
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1162.5 816 69.7
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 0.0e+00 1157.1 815 70.6
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1157.1 805 70.8
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1153.7 802 71.7
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 0.0e+00 1151.7 809 70.8
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 0.0e+00 1144.8 805 71.3
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 0.0e+00 1125.2 831 67.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 0.0e+00 1110.5 812 68.2
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 0.0e+00 1108.6 812 67.1
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 0.0e+00 1095.9 811 67.2
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 0.0e+00 1095.5 801 68.7
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 0.0e+00 1092.0 784 69.1
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 0.0e+00 1088.6 784 69.4
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 0.0e+00 1088.2 786 69.1
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 0.0e+00 1086.2 784 69.0
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 0.0e+00 1083.6 809 66.3
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 0.0e+00 1082.4 781 68.2
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 0.0e+00 1080.5 786 68.8
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 0.0e+00 1080.1 784 69.1
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 0.0e+00 1078.5 806 68.4
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 8.2e-311 1070.1 820 66.0
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.4e-310 1068.5 792 68.3
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.2e-310 1068.1 786 68.1
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 4.6e-309 1064.3 787 67.9
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 817 66.8
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.6e-307 1057.4 821 65.0
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.3e-306 1056.2 809 66.0
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 8.1e-306 1053.5 807 65.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.1e-305 1053.1 813 65.7
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.4e-305 1052.7 818 63.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 9.0e-305 1050.0 810 65.1
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.4e-304 1048.1 615 84.4
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 9.9e-304 1046.6 805 64.5
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 2.9e-303 1045.0 728 71.4
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.9e-302 1042.3 819 63.9
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.5e-299 1031.9 787 64.8
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 2.5e-299 1031.9 804 63.7
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 7.4e-299 1030.4 807 64.7
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 9.6e-299 1030.0 830 63.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.3e-298 1029.6 825 61.6
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.7e-295 1019.2 784 65.1
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.1e-294 1016.5 812 63.8
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 2.5e-294 1015.4 819 62.4
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.5e-294 1015.4 783 65.0
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.0e-292 1010.0 814 63.0
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 6.7e-292 1007.3 814 62.0
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.1e-291 1006.5 735 68.8
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.5e-291 1006.1 813 61.9
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.9e-291 1005.7 805 63.1
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 9.6e-291 1003.4 808 61.9
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.8e-290 1001.1 751 65.5
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.8e-290 1001.1 785 66.1
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.2e-288 996.5 810 61.7
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.7e-287 992.6 808 61.4
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.9e-287 991.1 809 61.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 4.9e-287 991.1 809 61.8
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 4.9e-287 991.1 808 61.0
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 5.5e-286 987.6 810 61.2
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 7.9e-285 983.8 809 61.2
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.1e-283 979.9 816 60.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 5.7e-283 977.6 836 59.4
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.8e-274 948.7 808 60.0
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.5e-272 943.0 819 60.7
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 8.8e-268 927.2 804 58.6
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-263 913.3 617 73.1
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.3e-263 913.3 617 73.1
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.9e-263 912.1 702 64.5
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.5e-263 911.0 851 58.2
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 4.2e-262 908.3 824 57.8
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.7e-259 897.1 623 71.6
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 2.2e-258 896.0 869 54.8
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.1e-245 851.3 591 70.7
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 8.8e-244 847.4 617 69.9
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 1.8e-241 839.7 778 56.7
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 7.0e-225 784.6 622 63.8
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 2.2e-210 736.5 718 52.2
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 9.6e-198 694.5 792 47.9
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 3.4e-195 686.0 812 45.8
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 7.1e-193 678.3 767 47.2
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 7.4e-182 641.7 720 47.1
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.1e-181 640.2 546 61.0
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 3.3e-166 589.7 401 72.6
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.0e-164 581.6 481 61.7
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 2.1e-160 570.5 472 59.1
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 6.7e-159 565.5 330 81.2
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.1e-156 558.1 549 52.1
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.4e-153 547.7 395 69.6
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 5.2e-135 486.1 790 37.3
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-134 484.6 341 68.0
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.7e-134 482.6 338 68.0
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.7e-131 472.2 394 61.2
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 2.0e-123 447.6 778 37.3
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.0e-119 435.3 700 38.4
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 9.5e-105 385.6 480 47.3
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.2e-102 378.6 280 68.2
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-98 365.2 472 42.8
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 2.0e-86 324.7 229 66.8
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.4e-86 323.6 301 56.5
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.3e-79 300.1 378 48.7
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.6e-78 297.7 840 29.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.9e-74 283.9 183 72.1
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.2e-69 268.1 320 45.0
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.5e-67 260.8 309 47.2
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.5e-65 255.4 188 67.6
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.0e-58 232.6 229 50.2
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 4.3e-57 227.3 176 62.5
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.6e-56 225.3 144 71.5
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 2.0e-54 218.4 232 56.5
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.3e-47 193.7 158 60.8
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.6e-43 182.2 168 58.3
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.4e-42 179.1 168 57.7
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.3e-41 174.1 221 41.2
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.3e-39 167.2 147 55.8
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.6e-38 164.9 213 44.6
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.5e-28 132.5 143 53.1
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-21 109.0 104 50.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 4.4e-17 94.4 761 21.6
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 4.7e-11 74.3 407 22.1
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 6.8e-10 70.5 73 49.3
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.7e-08 65.9 43 72.1
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.4e-07 62.8 91 39.6


User provided reference genes

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