Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 2.6e-187 658.7 355 100.0
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 1.1e-113 414.1 363 68.3
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 5.1e-103 378.6 371 63.6
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 2.0e-99 366.7 367 62.9
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 1.3e-93 347.4 405 55.8
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 3.5e-91 339.3 329 56.2
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 3.6e-88 329.3 334 55.7
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.3e-87 326.6 337 56.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 1.7e-85 320.5 327 58.1
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 3.5e-83 312.8 332 54.8
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 3.5e-83 312.8 336 53.9
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 7.7e-83 311.6 329 52.6
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 1.7e-82 310.5 329 53.2
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 4.7e-80 302.4 330 55.8
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 1.0e-79 301.2 325 52.0
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 3.0e-79 299.7 329 52.9
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 4.0e-79 299.3 330 56.1
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 5.7e-78 295.4 332 53.9
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 2.2e-77 293.5 331 55.0
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 4.8e-77 292.4 333 55.0
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 3.1e-76 289.7 332 52.4
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 5.3e-76 288.9 332 51.8
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 7.0e-76 288.5 332 52.1
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 7.0e-76 288.5 339 56.9
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 1.0e-74 284.6 323 51.7
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 3.8e-74 282.7 326 51.2
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 1.5e-73 280.8 326 51.5
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 1.9e-73 280.4 329 51.4
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 3.2e-73 279.6 326 51.2
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 7.2e-73 278.5 317 50.5
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 9.4e-73 278.1 335 52.8
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 2.7e-72 276.6 328 51.5
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 2.7e-72 276.6 326 50.0
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 8.0e-72 275.0 353 48.7
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 2.3e-71 273.5 332 48.2
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 2.3e-71 273.5 321 52.6
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 3.7e-69 266.2 329 51.1
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 4.8e-69 265.8 326 49.4
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 8.3e-69 265.0 345 49.3
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 1.1e-68 264.6 345 49.3
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.1e-68 264.6 345 49.3
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 3.1e-68 263.1 324 48.8
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 5.4e-68 262.3 283 51.9
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 9.1e-68 261.5 331 49.2
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 6.6e-66 255.4 342 50.6
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 3.3e-65 253.1 364 49.2
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.4e-63 247.7 338 45.3
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 7.5e-62 241.9 338 44.7
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 1.1e-60 238.0 326 46.9
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 1.1e-60 238.0 326 46.9
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 9.2e-60 235.0 340 41.8
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 3.3e-57 226.5 341 43.4
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 5.6e-57 225.7 322 45.3
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 7.3e-57 225.3 343 44.6
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 3.1e-55 219.9 346 47.4
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 3.4e-54 216.5 292 49.3
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 4.4e-54 216.1 331 42.9
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 5.4e-52 209.1 341 40.2
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.6e-51 207.6 338 39.9
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 1.6e-51 207.6 338 39.9
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 3.9e-50 203.0 364 44.8
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 1.1e-49 201.4 267 49.8
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 7.3e-49 198.7 361 41.3
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 1.2e-48 198.0 335 39.1
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 1.6e-48 197.6 330 43.0
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 2.8e-48 196.8 336 39.3
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.6e-48 196.4 325 41.5
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 8.1e-48 195.3 329 41.0
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 2.3e-47 193.7 334 38.3
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 2.3e-47 193.7 334 38.3
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 2.3e-47 193.7 300 45.3
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 8.9e-47 191.8 342 40.6
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.2e-46 191.4 342 40.6
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 1.7e-45 187.6 319 42.6
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 1.7e-45 187.6 343 44.3
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 1.4e-44 184.5 327 38.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 7.1e-44 182.2 393 39.7
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 9.2e-44 181.8 338 37.6
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.7e-43 180.3 391 36.3
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 2.7e-43 180.3 368 40.5
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 2.7e-43 180.3 368 40.5
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 5.1e-42 176.0 346 37.0
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 6.6e-42 175.6 342 37.4
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 8.6e-42 175.3 341 37.5
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.9e-41 174.1 342 38.3
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 7.3e-41 172.2 325 39.1
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 1.2e-40 171.4 340 38.2
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 8.1e-40 168.7 298 40.6
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 4.4e-38 162.9 343 36.2
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 7.6e-38 162.2 343 36.2
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 1.4e-36 157.9 331 36.3
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.4e-36 157.1 297 41.1
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 1.2e-35 154.8 459 33.8
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 1.3e-34 151.4 272 42.3
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 1.1e-33 148.3 342 37.7
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.1e-31 141.7 352 35.8
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 1.4e-31 141.4 347 34.0
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 3.1e-31 140.2 333 36.0
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 6.8e-31 139.0 353 32.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 1.2e-30 138.3 333 40.8
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 2.6e-30 137.1 338 40.8
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 9.9e-30 135.2 227 42.7
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 2.2e-29 134.0 206 44.7
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 3.8e-29 133.3 331 38.7
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 8.4e-29 132.1 283 39.2
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 2.7e-27 127.1 271 36.2
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 3.5e-27 126.7 170 45.9
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 2.8e-24 117.1 332 38.0
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 2.8e-24 117.1 332 38.0
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 9.0e-23 112.1 330 29.7
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 2.0e-22 110.9 128 50.0
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 1.4e-20 104.8 254 31.9
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 9.3e-20 102.1 110 50.0
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 4.6e-19 99.8 124 50.8
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 3.9e-18 96.7 99 49.5
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 2.4e-12 77.4 292 28.8
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 5.5e-12 76.3 336 31.0
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 4.6e-11 73.2 88 46.6
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 7.9e-11 72.4 85 55.3
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 3.0e-10 70.5 128 39.1
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 9.6e-09 65.5 125 35.2
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.6e-08 64.7 128 35.9
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 4.0e-07 60.1 312 33.0
Gohir.A03G091950 Gossypium hirsutum HOM05D000283 ORTHO05D217903 6.9e-07 59.3 81 38.3
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 1.0e-05 55.5 189 28.0


User provided reference genes

Program Settings