Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.5e-189 666.0 332 100.0
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 3.2e-163 578.6 331 85.2
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 1.7e-161 572.8 332 86.7
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 3.3e-152 542.0 331 80.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 9.5e-152 540.4 332 80.7
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.8e-150 536.2 331 79.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.5e-149 533.1 334 79.3
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 3.4e-149 531.9 334 78.7
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 7.6e-149 530.8 334 79.0
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 7.6e-149 530.8 334 79.9
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.2e-148 529.3 333 77.8
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.9e-148 528.1 332 78.9
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.4e-147 526.6 334 78.4
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 7.1e-147 524.2 340 77.6
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 9.2e-147 523.9 332 78.3
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 1.2e-146 523.5 334 78.1
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.3e-145 520.0 334 77.2
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 3.9e-145 518.5 334 76.9
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 8.6e-145 517.3 334 78.7
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.5e-144 516.5 334 76.9
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-144 516.5 333 77.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.9e-144 516.2 332 75.9
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 4.3e-144 515.0 334 77.8
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 9.6e-144 513.8 332 77.1
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.2e-143 513.5 337 76.9
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 3.6e-143 511.9 332 76.2
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 3.6e-143 511.9 335 76.1
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 4.7e-143 511.5 332 75.0
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 6.2e-143 511.1 333 75.4
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 2.4e-142 509.2 331 75.5
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 3.1e-142 508.8 332 77.4
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 1.2e-141 506.9 334 75.1
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 5.8e-141 504.6 332 77.1
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 5.8e-141 504.6 334 76.0
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 7.6e-141 504.2 334 74.6
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 6.4e-140 501.1 334 75.4
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.4e-140 500.7 334 75.1
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.4e-139 500.0 335 77.3
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.4e-139 500.0 336 73.8
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.9e-139 499.6 320 77.8
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 1.6e-138 496.5 335 74.3
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 4.6e-138 495.0 335 74.3
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.0e-138 494.6 334 74.6
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 6.0e-138 494.6 335 72.8
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.0e-137 493.8 335 74.0
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.3e-137 493.4 334 74.6
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 1.7e-137 493.0 332 73.8
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 2.3e-137 492.7 337 73.9
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.0e-137 492.3 332 73.2
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 3.0e-137 492.3 334 74.3
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 3.9e-137 491.9 335 73.7
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 5.1e-137 491.5 334 74.6
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 4.3e-136 488.4 330 72.7
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 9.6e-136 487.3 332 73.8
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 1.6e-135 486.5 335 71.9
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 6.2e-135 484.6 339 75.5
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 6.2e-135 484.6 324 74.7
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.8e-134 483.0 332 72.6
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 3.1e-134 482.3 339 74.0
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.2e-133 480.3 337 71.2
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.0e-133 479.6 335 71.3
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.6e-133 479.2 340 70.9
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 2.6e-133 479.2 340 70.9
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 4.5e-133 478.4 330 71.8
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 5.8e-133 478.0 340 72.4
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.7e-132 476.5 335 71.3
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.4e-131 473.4 332 70.2
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 7.1e-131 471.1 337 72.1
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 1.2e-130 470.3 335 70.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 2.1e-130 469.5 336 70.5
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 4.6e-130 468.4 338 70.4
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.6e-130 468.4 324 71.6
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.6e-130 468.4 333 70.3
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.0e-129 467.2 343 72.3
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 1.3e-129 466.8 382 64.4
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.3e-129 466.8 333 73.0
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.3e-129 466.8 337 71.5
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 3.9e-129 465.3 337 71.5
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 8.7e-129 464.2 342 71.6
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.1e-128 463.8 325 72.0
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 1.1e-128 463.8 337 71.5
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.5e-128 463.4 330 70.6
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.5e-128 463.4 338 69.8
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 7.4e-128 461.1 335 69.6
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.4e-126 456.1 332 69.9
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 3.1e-126 455.7 332 68.7
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 1.5e-125 453.4 332 67.8
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.4e-125 452.2 354 64.7
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 5.8e-125 451.4 340 69.1
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 5.8e-125 451.4 329 69.0
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 5.8e-125 451.4 329 69.0
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 6.4e-124 448.0 354 66.1
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 6.4e-124 448.0 354 66.1
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 1.9e-123 446.4 338 67.5
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 7.1e-123 444.5 341 69.2
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.5e-122 442.2 335 66.3
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 7.9e-122 441.0 340 65.9
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 7.9e-122 441.0 348 68.7
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 3.0e-121 439.1 341 68.9
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 6.2e-119 431.4 334 63.8
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 1.7e-116 423.3 333 66.4
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 6.5e-116 421.4 340 65.6
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 4.6e-114 415.2 359 61.6
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 2.5e-112 409.5 358 65.1
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.8e-111 405.2 262 77.5
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.6e-109 399.4 353 61.2
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 2.6e-109 399.4 351 60.4
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-108 397.1 335 61.2
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.4e-107 393.7 323 66.6
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.1e-106 389.8 342 59.1
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 4.8e-103 378.6 336 58.6
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 6.3e-103 378.3 356 58.1
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 1.5e-101 373.6 341 58.9
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 2.2e-100 369.8 285 68.4
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 8.5e-100 367.9 329 58.1
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 7.4e-96 354.8 320 60.0
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.8e-86 323.6 228 70.6
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 3.5e-85 319.3 258 65.5
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 3.1e-78 296.2 246 65.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 9.4e-75 284.6 355 46.5
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 9.4e-75 284.6 210 71.0
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.8e-70 270.4 186 72.0
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.9e-68 263.1 273 56.8
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 2.8e-66 256.5 188 70.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 3.7e-63 246.1 379 43.8
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.0e-61 240.4 353 43.6
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 2.9e-60 236.5 355 45.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.9e-59 233.8 361 41.3
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.7e-55 219.5 215 54.9
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 1.7e-52 210.7 355 39.7
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 6.8e-49 198.7 225 50.2
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 6.4e-47 192.2 175 53.7
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 5.0e-44 182.6 363 36.4
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 1.6e-37 161.0 363 33.1
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 7.8e-37 158.7 346 37.3
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 6.4e-31 139.0 116 63.8
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 1.6e-26 124.4 364 32.1
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.1e-26 124.0 125 49.6
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 1.8e-25 120.9 147 46.3
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 2.4e-25 120.6 124 50.0
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.9e-23 113.6 81 61.7
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 1.1e-22 111.7 81 61.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.4e-22 110.5 85 61.2
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.3e-22 108.6 112 48.2
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 3.5e-21 106.7 101 58.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.3e-18 98.2 150 35.3
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 1.5e-16 91.3 55 76.4
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 7.6e-16 89.0 74 56.8
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 1.9e-14 84.3 41 92.7
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.2e-14 83.2 81 55.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.7e-13 80.5 66 63.6
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.7e-12 75.9 336 25.6
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 8.1e-10 68.9 166 26.5
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.8e-09 67.8 164 29.3
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.9e-08 62.0 43 65.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 1.3e-07 61.6 53 49.1
ATR0019G039 Amborella trichopoda HOM05D004877 ORTHO05D005942 7.1e-06 55.8 96 43.8


User provided reference genes

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