Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.6e-61 239.2 118 100.0
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.4e-43 178.3 97 91.8
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.4e-43 178.3 98 93.9
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 3.4e-43 178.3 98 93.9
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 9.8e-43 176.8 94 93.6
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-42 176.4 94 92.6
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.3e-42 176.4 93 93.5
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 2.2e-42 175.6 94 92.6
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.9e-42 175.3 94 92.6
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 3.7e-42 174.9 98 91.8
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 6.4e-42 174.1 93 90.3
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 8.3e-42 173.7 96 87.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 8.3e-42 173.7 96 87.5
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.1e-41 173.3 94 91.5
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.1e-41 173.3 94 91.5
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.1e-41 173.3 94 89.4
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.1e-41 173.3 94 89.4
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 1.4e-41 172.9 94 90.4
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.9e-41 172.6 98 87.8
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.2e-41 171.8 91 90.1
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 3.2e-41 171.8 94 89.4
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 3.2e-41 171.8 94 88.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 3.2e-41 171.8 99 87.9
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 4.1e-41 171.4 96 86.5
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.4e-41 171.0 98 87.8
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 5.4e-41 171.0 94 89.4
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 5.4e-41 171.0 94 90.4
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 7.1e-41 170.6 98 89.8
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 7.1e-41 170.6 98 87.8
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 9.2e-41 170.2 98 89.8
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.2e-40 169.9 92 91.3
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.2e-40 169.9 98 86.7
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.2e-40 169.9 93 89.2
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.6e-40 169.5 94 88.3
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 2.1e-40 169.1 98 88.8
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.1e-40 169.1 94 87.2
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 2.7e-40 168.7 94 89.4
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 4.6e-40 167.9 94 87.2
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 6.0e-40 167.5 94 87.2
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 7.8e-40 167.2 98 86.7
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 7.8e-40 167.2 98 86.7
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 7.8e-40 167.2 96 85.4
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.0e-39 166.8 98 86.7
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.0e-39 166.8 98 86.7
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.3e-39 165.6 94 87.2
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 2.3e-39 165.6 88 92.0
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-39 165.6 94 87.2
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 3.9e-39 164.9 90 91.1
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.1e-39 164.5 98 84.7
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 6.6e-39 164.1 90 90.0
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.1e-38 163.3 94 84.0
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.1e-38 163.3 95 86.3
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.5e-38 162.9 98 80.6
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.5e-38 162.9 94 87.2
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.5e-38 162.2 85 92.9
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 4.3e-38 161.4 105 79.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 4.3e-38 161.4 94 85.1
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 5.6e-38 161.0 94 86.2
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 5.6e-38 161.0 94 85.1
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 7.3e-38 160.6 96 83.3
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 7.3e-38 160.6 94 84.0
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 7.3e-38 160.6 94 84.0
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 9.5e-38 160.2 94 83.0
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 9.5e-38 160.2 106 76.4
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 9.5e-38 160.2 84 91.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.5e-38 160.2 98 84.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.5e-38 160.2 98 84.7
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.6e-37 159.5 94 84.0
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.6e-37 159.5 87 89.7
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 2.8e-37 158.7 94 85.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.8e-37 158.7 94 85.1
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 6.2e-37 157.5 94 81.9
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 6.2e-37 157.5 96 81.2
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.3e-36 155.6 95 76.8
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 4.0e-36 154.8 100 79.0
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 4.0e-36 154.8 104 78.8
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 4.0e-36 154.8 121 68.6
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 2.6e-35 152.1 96 82.3
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 2.6e-35 152.1 96 82.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 3.4e-35 151.8 85 89.4
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 4.4e-35 151.4 94 84.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 5.8e-35 151.0 96 78.1
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 5.8e-35 151.0 96 77.1
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 7.6e-35 150.6 94 77.7
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 1.3e-34 149.8 89 85.4
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.7e-34 149.4 94 78.7
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.7e-34 149.4 98 77.6
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 2.9e-34 148.7 85 88.2
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 2.9e-34 148.7 85 88.2
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 2.9e-34 148.7 85 88.2
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 3.8e-34 148.3 94 77.7
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 8.4e-34 147.1 100 72.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.4e-33 146.4 85 85.9
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 4.1e-33 144.8 94 77.7
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 2.7e-32 142.1 94 76.6
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 6.0e-32 141.0 96 74.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 7.8e-32 140.6 87 75.9
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 2.3e-31 139.0 82 86.6
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.5e-30 135.6 81 88.9
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 2.5e-30 135.6 87 81.6
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 7.3e-30 134.0 209 43.1
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 9.6e-30 133.7 77 85.7
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.2e-29 133.3 77 88.3
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.2e-29 133.3 73 90.4
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.8e-28 129.4 82 76.8
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 4.0e-28 128.3 73 82.2
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 3.4e-27 125.2 69 89.9
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.7e-26 122.9 84 75.0
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 6.4e-26 120.9 73 79.5
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.4e-25 119.8 70 77.1
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.4e-25 119.0 98 67.3
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 3.2e-25 118.6 77 77.9
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 9.3e-25 117.1 72 79.2
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.6e-24 114.8 94 67.0
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 6.0e-24 114.4 73 75.3
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 7.8e-24 114.0 90 68.9
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 6.6e-23 110.9 84 67.9
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 8.7e-23 110.5 94 63.8
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 4.5e-19 98.2 102 50.0
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 2.9e-18 95.5 87 54.0
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.9e-18 94.7 52 90.4
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.9e-17 92.8 91 57.1
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 3.2e-17 92.0 59 78.0
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 1.0e-15 87.0 46 89.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 5.6e-14 81.3 54 68.5
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 3.7e-13 78.6 43 86.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 4.8e-13 78.2 77 58.4
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.4e-12 76.6 98 46.9
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.9e-06 56.2 36 72.2


User provided reference genes

Program Settings