Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 2392.1 1350 100.0
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 0.0e+00 1710.3 1381 75.0
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 0.0e+00 1561.6 1366 67.9
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 0.0e+00 1557.7 1427 68.9
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 0.0e+00 1444.9 1392 66.8
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1419.8 1389 65.4
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 0.0e+00 1406.7 1413 62.8
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 0.0e+00 1400.6 1373 63.4
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 0.0e+00 1375.9 1381 66.0
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 0.0e+00 1372.8 1412 61.8
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1367.4 1393 58.5
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 0.0e+00 1340.1 1390 59.4
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1331.2 1405 59.7
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1331.2 1406 60.4
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1323.1 1411 59.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 0.0e+00 1318.1 1385 62.7
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1313.1 1406 61.7
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 0.0e+00 1304.7 1418 59.1
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1303.1 1399 59.1
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1301.2 1409 60.9
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1295.4 1409 62.0
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1294.6 1401 58.3
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1291.6 1406 58.0
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 0.0e+00 1289.6 1392 58.3
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 0.0e+00 1284.2 1436 60.0
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1279.2 1377 60.3
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 0.0e+00 1274.6 1380 58.7
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 0.0e+00 1270.8 1403 58.8
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 0.0e+00 1265.0 1390 59.7
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 0.0e+00 1263.1 1373 57.2
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 0.0e+00 1257.3 1340 59.4
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 0.0e+00 1250.7 1376 57.2
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1249.6 1395 59.1
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 0.0e+00 1249.2 1396 59.1
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1241.1 1375 58.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1240.7 1427 56.9
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 0.0e+00 1235.7 1390 57.8
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1233.4 1481 54.7
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1232.6 1409 56.5
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 0.0e+00 1228.4 1408 56.2
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1221.5 1376 55.8
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 0.0e+00 1219.5 1414 58.2
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 0.0e+00 1219.5 1408 57.5
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 0.0e+00 1213.4 1398 56.2
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1213.0 1416 56.9
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 0.0e+00 1206.4 1429 54.3
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 0.0e+00 1203.0 1440 56.0
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 0.0e+00 1192.6 1372 55.2
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 0.0e+00 1191.0 1541 51.4
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 0.0e+00 1189.1 1381 55.8
Gohir.A06G143000 Gossypium hirsutum HOM05D001849 ORTHO05D004075 0.0e+00 1180.6 1395 55.1
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 0.0e+00 1177.2 1422 53.9
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 0.0e+00 1175.2 1381 55.7
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 0.0e+00 1174.5 1394 54.9
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 0.0e+00 1174.1 1403 54.2
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 0.0e+00 1170.6 1407 53.9
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 0.0e+00 1152.1 1239 60.6
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 0.0e+00 1133.6 1378 53.3
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 0.0e+00 1114.8 1404 52.7
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 0.0e+00 1098.6 1433 54.0
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 0.0e+00 1084.3 1377 52.3
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 0.0e+00 1077.0 1426 50.6
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.1e-310 1070.5 1386 51.1
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.4e-304 1048.5 1259 52.6
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 6.3e-303 1044.6 1395 50.6
Cpa.g.sc25.150 Carica papaya HOM05D001849 ORTHO05D004075 9.1e-302 1040.8 1183 58.9
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 1.2e-301 1040.4 1392 51.2
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 7.7e-301 1037.7 1075 56.8
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 9.2e-294 1014.2 1460 55.6
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 1.0e-289 1000.7 1263 51.2
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 7.5e-288 994.6 1381 50.0
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 1.3e-284 983.8 1267 49.3
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 7.3e-283 978.0 1450 47.0
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 6.2e-282 974.9 1221 51.0
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.2e-277 960.7 1416 47.2
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 8.1e-274 948.0 1416 47.2
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-273 947.2 1540 45.5
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 3.4e-272 942.6 1407 47.5
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 3.2e-270 936.0 1434 46.0
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 1.3e-268 930.6 1522 44.7
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 3.0e-268 929.5 1432 46.8
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 6.6e-268 928.3 1420 47.5
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 2.5e-267 926.4 929 58.1
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 4.3e-267 925.6 1434 46.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 3.6e-266 922.5 1394 45.8
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 1.2e-264 917.5 1191 49.0
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 2.6e-264 916.4 769 67.4
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 4.4e-264 915.6 906 58.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.3e-263 914.1 1369 46.4
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 6.6e-260 901.7 1441 45.5
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 1.5e-259 900.6 1387 47.9
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.8e-257 893.6 1406 44.6
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 4.0e-257 892.5 1441 45.3
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 9.3e-254 881.3 1408 46.3
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 1.2e-253 880.9 1444 43.4
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 1.6e-253 880.6 1406 45.9
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 1.6e-253 880.6 1406 45.9
TAR626G0481 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.5e-251 873.2 1114 52.9
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 3.6e-250 869.4 1418 45.4
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 1.4e-249 867.5 1331 46.4
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 9.0e-249 864.8 1412 45.4
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 9.9e-248 861.3 1392 45.5
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.3e-239 834.3 1388 45.7
Manes.11G016300 Manihot esculenta HOM05D001849 ORTHO05D004075 3.3e-235 819.7 1231 45.9
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.1e-227 794.7 529 79.2
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 2.2e-226 790.4 1397 46.2
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 1.8e-225 787.3 1423 45.1
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 7.7e-224 781.9 1370 41.9
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.1e-222 778.1 922 52.6
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 3.2e-222 776.5 1385 44.4
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 8.2e-218 761.9 1402 40.7
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 2.6e-216 756.9 930 50.4
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 4.7e-213 746.1 1063 46.6
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.0e-208 730.7 1394 42.8
Actinidia32208 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.5e-206 722.6 1041 51.2
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 1.4e-204 718.0 1410 40.8
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.9e-204 716.5 1154 43.7
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.9e-182 644.4 794 50.3
QL05p003384 Quercus lobata HOM05D001849 ORTHO05D004075 8.9e-180 635.6 897 58.1
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 9.8e-171 605.5 1247 38.6
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 4.4e-163 580.1 1230 38.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 2.4e-161 574.3 1264 38.9
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.7e-157 560.1 1307 38.6
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.9e-153 548.1 1299 35.2
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.6e-128 463.8 1393 35.1
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.3e-122 445.7 445 54.8
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 5.0e-114 417.2 1399 32.5
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 1.6e-112 412.1 328 68.9
MBI16_g25623_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.7e-112 411.4 1422 32.6
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 4.6e-104 384.0 547 44.8
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 2.8e-101 374.8 1212 33.0
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 6.3e-93 347.1 367 53.7
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 1.1e-92 346.3 1024 33.0
Haze_16071 Corylus avellana HOM05D001849 ORTHO05D004075 2.8e-85 321.6 533 44.1
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 4.1e-84 317.8 1301 31.0
SHI29649 Sapria himalayana HOM05D001849 ORTHO05D004075 7.2e-73 280.4 483 43.9
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.5e-67 261.5 983 30.3
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 5.0e-66 257.7 884 28.7
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 5.6e-65 254.2 963 28.6
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 5.6e-65 254.2 1147 28.7
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 9.8e-62 243.4 951 29.8
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 5.6e-57 227.6 972 28.7
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 3.6e-56 224.9 358 38.8
SHI29651 Sapria himalayana HOM05D001849 ORTHO05D004075 4.4e-54 218.0 592 45.6
vmacro15055 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 7.5e-54 217.2 213 58.2
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 6.4e-53 214.2 321 43.3
TAR626G0936 Trochodendron aralioides HOM05D001849 ORTHO05D004075 4.6e-51 208.0 213 61.5
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 7.8e-51 207.2 880 28.2
Psat4g083360 Pisum sativum HOM05D001061 ORTHO05D006881 5.0e-50 204.5 219 52.1
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 4.3e-49 201.4 859 28.8
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 1.1e-47 196.8 920 25.5
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 5.4e-44 184.5 190 55.3
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 9.2e-44 183.7 246 43.9
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 1.7e-42 179.5 1008 25.3
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 3.9e-42 178.3 547 31.4
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.9e-37 162.2 690 26.8
Pp3c13_8340 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.6e-35 156.4 1030 24.0
Pp3c3_3510 Physcomitrium patens HOM05D001849 ORTHO05D004075 1.6e-35 156.4 1067 23.1
AagrBONN_evm.TU.Sc2ySwM_344.4287 Anthoceros agrestis HOM05D001849 ORTHO05D004075 2.1e-35 156.0 937 24.7
BcaC03g15372 Brassica carinata HOM05D001849 ORTHO05D004075 7.8e-35 154.1 496 29.4
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 2.0e-30 139.4 615 26.5
Oeu011104.1 Olea europaea HOM05D001849 ORTHO05D004075 2.0e-30 139.4 199 60.8
Cpa.g.sc25.149 Carica papaya HOM05D020865 ORTHO05D004075 1.2e-27 130.2 125 61.6
Manes.14G108850 Manihot esculenta HOM05D001849 ORTHO05D004075 9.6e-25 120.6 853 25.1
Nitab4.5_0006425g0080 Nicotiana tabacum HOM05D001849 ORTHO05D004075 3.1e-23 115.5 402 30.6
SHI29648 Sapria himalayana HOM05D001849 ORTHO05D004075 3.1e-23 115.5 81 67.9
BcaB03g14986 Brassica carinata HOM05D001849 ORTHO05D004075 7.6e-22 110.9 142 45.8
Oeu013447.1 Olea europaea HOM05D001849 ORTHO05D004075 1.7e-21 109.8 252 34.9
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 1.9e-20 106.3 87 62.1
CBR_g31688 Chara braunii HOM05D001849 ORTHO05D004075 7.1e-20 104.4 161 34.2
SHI29650 Sapria himalayana HOM05D001849 ORTHO05D004075 1.3e-16 93.6 157 40.1
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 1.6e-16 93.2 88 56.8
MBI19_g29884_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 2.9e-13 82.4 260 31.9
MCO11G122 Micromonas commoda HOM05D001849 ORTHO05D004075 5.5e-12 78.2 86 45.3
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 1.9e-09 69.7 69 53.6
Atru.chr11.323 Acer truncatum HOM05D001849 ORTHO05D004075 4.3e-09 68.6 354 26.3
SEGI_04298 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 7.4e-09 67.8 124 35.5
Cfa010628 Carpinus fangiana HOM05D006204 ORTHO05D007851 2.1e-08 66.2 46 73.9
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 3.7e-08 65.5 49 57.1
Glyma.16G010466 Glycine max HOM05D001849 ORTHO05D004075 9.0e-07 60.8 67 44.8
Nitab4.5_0004322g0030 Nicotiana tabacum HOM05D001849 ORTHO05D004075 9.0e-07 60.8 34 76.5
SEGI_02030 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 1.5e-06 60.1 61 50.8
Os10g0391100 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004075 2.6e-06 59.3 584 30.5
C04p42890 Brassica napus HOM05D001675 ORTHO05D021664 4.5e-06 58.5 129 34.1


User provided reference genes

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