Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 0.0e+00 2205.6 1208 100.0
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 8.6e-81 306.6 329 48.3
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 2.3e-73 282.0 312 47.4
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 1.4e-70 272.7 277 47.3
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 5.2e-70 270.8 271 48.7
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 5.2e-70 270.8 274 48.9
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 1.2e-69 269.6 271 48.0
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 1.5e-69 269.2 355 42.3
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 2.0e-69 268.9 274 48.9
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 4.4e-69 267.7 283 47.3
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 4.4e-69 267.7 283 47.3
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 4.4e-69 267.7 268 48.5
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 5.8e-69 267.3 283 47.0
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 5.8e-69 267.3 283 47.0
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 5.8e-69 267.3 280 47.5
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 5.8e-69 267.3 283 47.3
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 5.8e-69 267.3 274 48.9
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 5.8e-69 267.3 283 47.0
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 9.9e-69 266.5 274 48.2
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 1.3e-68 266.2 274 48.2
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.2
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.5
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.5
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.5
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.2
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 48.2
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 1.7e-68 265.8 274 47.8
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 1.7e-68 265.8 271 48.0
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 2.9e-68 265.0 274 48.2
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 2.9e-68 265.0 283 47.0
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 3.7e-68 264.6 283 46.6
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 47.8
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 3.7e-68 264.6 271 48.0
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 3.7e-68 264.6 306 45.8
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 3.7e-68 264.6 271 48.0
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.2
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 3.7e-68 264.6 274 48.5
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 4.9e-68 264.2 274 48.2
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 4.9e-68 264.2 283 47.0
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 4.9e-68 264.2 274 47.8
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 4.9e-68 264.2 274 47.8
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 4.9e-68 264.2 354 41.5
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 4.9e-68 264.2 274 48.2
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 4.9e-68 264.2 280 47.5
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 6.4e-68 263.8 271 48.0
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 6.4e-68 263.8 271 48.0
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 6.4e-68 263.8 271 48.0
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 6.4e-68 263.8 354 41.0
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 6.4e-68 263.8 271 48.0
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 6.4e-68 263.8 274 48.2
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 8.4e-68 263.5 274 48.2
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 8.4e-68 263.5 274 48.2
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 8.4e-68 263.5 274 48.2
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 8.4e-68 263.5 274 48.2
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 8.4e-68 263.5 274 48.2
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.1e-67 263.1 271 48.0
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.1e-67 263.1 271 48.0
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 1.1e-67 263.1 375 39.7
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 47.8
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 1.4e-67 262.7 271 48.3
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.4e-67 262.7 283 46.3
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 1.4e-67 262.7 358 40.5
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.4e-67 262.7 271 46.1
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.4e-67 262.7 274 47.4
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 48.5
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 1.4e-67 262.7 274 47.8
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 1.4e-67 262.7 358 40.8
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 1.9e-67 262.3 274 48.2
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.9e-67 262.3 274 48.2
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 1.9e-67 262.3 274 47.8
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 2.4e-67 261.9 358 40.2
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 2.4e-67 261.9 274 47.4
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 2.4e-67 261.9 274 47.8
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.4e-67 261.9 367 39.5
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 3.2e-67 261.5 358 40.8
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 3.2e-67 261.5 358 40.8
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 3.2e-67 261.5 274 47.8
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 3.2e-67 261.5 271 47.6
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 3.2e-67 261.5 283 46.3
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 4.1e-67 261.2 274 48.2
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 4.1e-67 261.2 274 48.2
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 4.1e-67 261.2 274 48.2
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 4.1e-67 261.2 274 48.2
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 4.1e-67 261.2 274 48.2
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 5.4e-67 260.8 379 38.5
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 7.1e-67 260.4 375 39.5
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 7.1e-67 260.4 274 47.8
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 7.1e-67 260.4 367 39.8
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 7.1e-67 260.4 358 40.5
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 9.2e-67 260.0 358 40.2
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.6e-66 259.2 358 40.2
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.6e-66 259.2 358 40.2
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.6e-66 259.2 271 46.9
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.6e-66 259.2 358 40.2
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 2.1e-66 258.8 358 40.5
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 2.7e-66 258.5 375 39.5
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 3.5e-66 258.1 367 39.5
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 4.6e-66 257.7 358 40.2
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 6.0e-66 257.3 279 47.0
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 1.7e-65 255.8 368 39.7
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.3e-65 255.4 293 44.4
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 2.3e-65 255.4 295 45.1
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.3e-65 255.4 474 35.0
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 6.6e-65 253.8 295 44.4
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 6.6e-65 253.8 274 44.5
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 1.9e-64 252.3 298 44.3
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 7.3e-64 250.4 274 46.7
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 1.8e-62 245.7 223 52.5
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 1.8e-62 245.7 379 38.3
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 4.0e-62 244.6 212 54.2
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 5.2e-62 244.2 281 42.7
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 8.9e-62 243.4 273 44.7
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 4.4e-61 241.1 391 37.3
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 5.8e-61 240.7 237 48.9
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 3.8e-60 238.0 416 35.3
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 4.9e-60 237.7 237 48.9
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 4.9e-60 237.7 357 38.1
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 6.4e-60 237.3 225 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 8.4e-60 236.9 279 42.7
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 3.2e-59 235.0 338 38.8
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 6.0e-58 230.7 181 58.0
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 8.7e-57 226.9 274 43.8
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 1.5e-56 226.1 228 50.4
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.5e-56 226.1 233 49.4
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 9.6e-56 223.4 224 50.9
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 1.4e-54 219.5 191 52.9
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 4.0e-54 218.0 274 42.3
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 6.9e-54 217.2 274 42.3
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 4.4e-53 214.5 274 42.0
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 4.4e-53 214.5 367 36.0
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 3.0e-49 201.8 205 49.3
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 4.8e-47 194.5 213 47.9
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 4.0e-46 191.4 157 56.7
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 5.8e-45 187.6 279 37.3
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 9.9e-45 186.8 279 37.3
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 9.3e-43 180.3 215 45.1
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 2.5e-35 155.6 211 43.1
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 4.3e-32 144.8 112 60.7
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 7.4e-32 144.1 146 47.9
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.4e-30 139.8 176 40.9
PSO210G6350 Papaver somniferum HOM05D000006 ORTHO05D004030 2.2e-28 132.5 247 32.0
SEGI_04115 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 3.9e-25 121.7 177 39.5
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 3.3e-24 118.6 153 42.5
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 1.6e-23 116.3 76 71.1
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 3.1e-22 112.1 161 39.8
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.0e-20 107.1 148 37.8
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 5.9e-13 81.3 163 31.3
TAR376G0202 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.0e-12 80.5 76 43.4
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 5.0e-12 78.2 54 66.7
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 5.0e-12 78.2 54 66.7
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 8.5e-12 77.4 66 57.6
Gohir.D04G003466 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.9e-11 76.3 120 36.7
Gorai.012G004600 Gossypium raimondii HOM05D000006 ORTHO05D004030 5.5e-11 74.7 120 36.7
CAN.G523.61 Capsicum annuum HOM05D001058 ORTHO05D000911 9.4e-11 73.9 119 35.3
SEGI_16294 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.8e-09 69.7 107 32.7
arahy.Tifrunner.gnm1.ann1.D5YD9F Arachis hypogaea HOM05D000006 ORTHO05D004030 2.2e-07 62.8 71 40.8
BraA06t26075Z Brassica rapa HOM05D000006 ORTHO05D004030 6.3e-07 61.2 50 58.0


User provided reference genes

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