Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa027274 Carpinus fangiana HOM05D006172 ORTHO05D005515 1.6e-180 636.0 324 100.0
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 4.8e-23 112.8 245 35.1
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 8.5e-20 102.1 227 32.2
SHI02199 Sapria himalayana HOM05D006172 ORTHO05D005515 1.1e-19 101.7 247 33.6
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 3.2e-19 100.1 254 32.3
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 9.4e-19 98.6 260 30.8
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 1.2e-18 98.2 267 30.0
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 2.7e-18 97.1 227 32.2
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 3.6e-18 96.7 247 34.0
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 6.1e-18 95.9 231 32.5
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 6.1e-18 95.9 247 31.2
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 6.1e-18 95.9 249 30.5
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 7.9e-18 95.5 265 32.1
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 1.0e-17 95.1 231 29.9
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 1.4e-17 94.7 230 32.2
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 1.8e-17 94.4 239 31.0
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 2.3e-17 94.0 266 30.5
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 2.3e-17 94.0 239 30.5
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 2.3e-17 94.0 250 32.0
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 3.0e-17 93.6 293 30.4
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 3.9e-17 93.2 219 32.9
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 3.9e-17 93.2 276 29.0
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 3.9e-17 93.2 276 29.0
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 3.9e-17 93.2 239 31.0
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 3.9e-17 93.2 231 30.3
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 5.1e-17 92.8 265 32.1
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 5.1e-17 92.8 239 31.4
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 6.7e-17 92.4 229 31.4
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 6.7e-17 92.4 239 31.0
CARHR252880 Cardamine hirsuta HOM05D006172 ORTHO05D005515 6.7e-17 92.4 241 31.1
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 6.7e-17 92.4 251 31.5
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 8.8e-17 92.0 236 31.4
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 1.1e-16 91.7 267 30.0
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 1.1e-16 91.7 250 31.2
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 1.1e-16 91.7 239 34.3
AagrBONN_evm.TU.Sc2ySwM_362.1355 Anthoceros agrestis HOM05D006172 ORTHO05D005515 1.5e-16 91.3 243 31.7
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 1.5e-16 91.3 277 30.3
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 2.0e-16 90.9 268 28.4
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 2.0e-16 90.9 268 28.4
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 2.0e-16 90.9 239 34.3
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 2.0e-16 90.9 239 29.3
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 2.0e-16 90.9 250 30.4
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 2.0e-16 90.9 260 30.8
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 2.0e-16 90.9 227 30.8
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 2.5e-16 90.5 239 30.5
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 2.5e-16 90.5 248 30.2
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 2.5e-16 90.5 248 29.8
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 2.5e-16 90.5 243 32.1
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 2.5e-16 90.5 243 32.1
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 3.3e-16 90.1 243 31.3
Atru.chr10.2224 Acer truncatum HOM05D006172 ORTHO05D005515 3.3e-16 90.1 243 31.3
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 3.3e-16 90.1 229 31.0
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 3.3e-16 90.1 247 29.1
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 3.3e-16 90.1 271 31.4
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 3.3e-16 90.1 278 29.9
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 3.3e-16 90.1 248 30.6
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 3.3e-16 90.1 253 31.2
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 5.7e-16 89.4 239 30.5
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 1.7e-15 87.8 248 31.9
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 1.7e-15 87.8 248 29.8
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 2.2e-15 87.4 265 27.9
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 2.8e-15 87.0 247 30.8
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 2.8e-15 87.0 250 29.2
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 3.7e-15 86.7 279 30.1
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 3.7e-15 86.7 282 29.4
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 4.8e-15 86.3 252 31.0
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 6.3e-15 85.9 245 29.8
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 6.3e-15 85.9 249 30.5
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 8.2e-15 85.5 251 29.5
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 1.1e-14 85.1 260 29.6
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 1.1e-14 85.1 241 28.2
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 1.4e-14 84.7 294 28.2
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 1.4e-14 84.7 259 29.3
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 1.8e-14 84.3 314 29.3
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 1.8e-14 84.3 251 31.1
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 2.4e-14 84.0 270 28.9
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 3.1e-14 83.6 230 30.9
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 3.1e-14 83.6 245 27.8
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 4.1e-14 83.2 314 29.3
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 4.1e-14 83.2 314 29.3
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 4.1e-14 83.2 239 29.7
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 5.3e-14 82.8 229 30.6
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 6.9e-14 82.4 270 28.5
Actinidia28669 Actinidia chinensis HOM05D006172 ORTHO05D005515 1.2e-13 81.6 247 28.3
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 1.5e-13 81.3 239 29.3
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 2.0e-13 80.9 242 28.9
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 4.5e-13 79.7 266 28.6
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 5.9e-13 79.3 253 30.0
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 2.9e-12 77.0 248 30.2
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 5.0e-12 76.3 228 28.9
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 1.1e-11 75.1 253 28.9
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 2.5e-11 73.9 261 27.6
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 1.2e-10 71.6 252 28.2
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 1.2e-10 71.6 226 30.5
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.9e-09 66.6 277 26.4
HPP92_012400 Vanilla planifolia HOM05D006172 ORTHO05D005515 6.7e-09 65.9 239 28.5
unitig_37.g12155 Utricularia gibba HOM05D006172 ORTHO05D005515 1.8e-06 57.8 97 36.1


User provided reference genes

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