Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1844.3 943 100.0
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 1.8e-131 474.6 978 34.5
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 2.6e-130 470.7 972 32.8
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 4.5e-130 469.9 972 34.1
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 1.7e-129 468.0 982 34.2
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 5.0e-129 466.5 980 33.8
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 1.1e-128 465.3 992 32.8
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 2.5e-128 464.2 973 34.1
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 7.2e-128 462.6 993 33.3
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 9.4e-128 462.2 971 33.8
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 1.2e-127 461.8 960 32.9
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 1.6e-127 461.5 972 34.0
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 3.6e-127 460.3 996 32.5
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 7.9e-127 459.1 999 32.1
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 5.1e-126 456.4 985 32.4
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 1.1e-125 455.3 993 31.9
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 1.5e-125 454.9 993 32.4
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 4.4e-125 453.4 975 32.4
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 4.4e-125 453.4 975 32.4
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 5.7e-125 453.0 994 31.8
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 9.7e-125 452.2 992 31.8
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 9.7e-125 452.2 1001 32.4
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 1.7e-124 451.4 978 32.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 2.8e-124 450.7 962 32.2
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 2.8e-124 450.7 993 31.9
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 3.7e-124 450.3 984 31.4
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 4.8e-124 449.9 979 32.7
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 8.2e-124 449.1 992 30.7
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 1.1e-123 448.7 911 33.3
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 1.4e-123 448.4 989 31.2
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 3.1e-123 447.2 1029 32.4
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 4.1e-123 446.8 1009 31.1
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 5.3e-123 446.4 934 32.3
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 9.1e-123 445.7 966 31.9
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 1.2e-122 445.3 1004 32.2
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 1.5e-122 444.9 974 31.0
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 2.0e-122 444.5 988 30.9
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 2.0e-122 444.5 988 30.9
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 2.0e-122 444.5 972 31.7
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 2.6e-122 444.1 995 31.1
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 2.6e-122 444.1 966 31.8
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 3.5e-122 443.7 984 30.8
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 3.5e-122 443.7 987 30.7
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 3.5e-122 443.7 996 31.4
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 4.5e-122 443.4 1009 31.1
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 5.9e-122 443.0 1048 30.3
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 1.0e-121 442.2 974 31.9
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 1.7e-121 441.4 1022 31.2
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 2.9e-121 440.7 984 31.3
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 5.0e-121 439.9 994 30.9
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 6.5e-121 439.5 1028 30.7
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 6.5e-121 439.5 1025 31.6
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 1.1e-120 438.7 1038 30.3
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.5e-120 438.3 1000 30.4
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 1.5e-120 438.3 958 31.9
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 2.5e-120 437.6 967 31.6
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 2.5e-120 437.6 1038 31.1
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 2.5e-120 437.6 910 31.6
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 4.2e-120 436.8 1003 31.6
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 7.2e-120 436.0 967 31.0
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 9.4e-120 435.6 1066 30.7
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 2.1e-119 434.5 1023 29.9
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.7e-119 434.1 1033 30.7
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 3.6e-119 433.7 988 32.7
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 3.6e-119 433.7 992 30.8
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 5.2e-118 429.9 1051 30.9
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 8.8e-118 429.1 985 32.1
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 1.1e-117 428.7 983 30.8
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-117 428.3 1018 30.3
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 2.6e-117 427.6 956 31.5
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 2.6e-117 427.6 993 31.2
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 3.3e-117 427.2 1054 30.8
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 4.4e-117 426.8 1021 31.0
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 4.4e-117 426.8 995 31.5
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 5.7e-117 426.4 955 30.6
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 7.4e-117 426.0 1050 31.0
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 7.4e-117 426.0 1079 28.6
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 1.3e-116 425.2 1021 30.9
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 1.7e-116 424.9 1023 30.4
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 4.8e-116 423.3 1018 30.7
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 4.8e-116 423.3 1076 29.3
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 1.8e-115 421.4 969 31.8
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 1.8e-115 421.4 972 31.7
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 1.2e-114 418.7 992 30.0
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 1.3e-113 415.2 993 30.7
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 2.5e-112 411.0 994 31.2
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 3.6e-111 407.1 926 30.7
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 6.1e-111 406.4 913 32.6
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 4.0e-110 403.7 955 31.6
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 4.0e-110 403.7 1158 28.6
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 1.6e-106 391.7 866 32.1
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 5.0e-105 386.7 860 32.0
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 4.2e-104 383.6 943 30.6
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 5.7e-101 373.2 836 31.8
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 2.8e-95 354.4 899 30.3
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.2e-85 322.4 988 27.8
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 1.1e-80 305.8 764 29.7
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.1e-78 299.3 718 30.9
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 2.2e-68 265.0 912 28.4
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 4.1e-67 260.8 613 31.3
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 6.0e-66 256.9 358 40.5
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 3.0e-65 254.6 403 38.5
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.9e-64 251.9 599 31.2
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 1.8e-62 245.4 611 31.8
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 5.2e-62 243.8 484 33.5
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 3.4e-61 241.1 757 28.4
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 1.3e-60 239.2 424 33.5
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 1.6e-58 232.3 390 34.9
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.8e-55 221.5 342 36.0
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 4.8e-55 220.7 348 35.3
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 2.4e-51 208.4 842 25.1
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 3.9e-49 201.1 334 34.7
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.3e-48 197.6 295 39.7
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 2.2e-44 185.3 382 33.2
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 2.9e-44 184.9 292 34.9
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.5e-42 177.9 249 41.0
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 1.1e-40 172.9 244 40.6
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 1.5e-40 172.6 258 38.4
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 7.4e-32 143.7 179 40.8
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 4.5e-29 134.4 179 38.0
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 1.4e-27 129.4 222 32.0
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.2e-26 126.3 231 32.9
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 1.1e-24 119.8 154 39.6
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.3e-22 110.9 226 31.4
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-20 106.7 86 59.3
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 1.2e-18 99.8 145 38.6
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-18 99.4 187 31.0
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 9.1e-14 83.6 172 30.2
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 2.9e-12 78.6 120 39.2
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 4.2e-11 74.7 109 43.1
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.5e-11 74.3 104 35.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 7.9e-10 70.5 86 43.0
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 8.8e-09 67.0 109 35.8
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.5e-08 66.2 125 32.0
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 3.3e-08 65.1 220 24.5
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.2e-07 62.4 109 33.0


User provided reference genes

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