Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026504 Carpinus fangiana HOM05D004285 ORTHO05D005176 1.1e-105 386.7 212 100.0
CSS0033426 Camellia sinensis var. sinensis HOM05D004285 ORTHO05D005176 3.2e-20 102.8 183 40.4
PGR102G2430 Punica granatum HOM05D004285 ORTHO05D005176 3.2e-20 102.8 191 38.2
ECA234G4310 Erigeron canadensis HOM05D004285 ORTHO05D005176 4.2e-20 102.4 182 41.8
TWI79G0936 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 5.5e-20 102.1 191 38.2
CDE02G0727 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 7.2e-20 101.7 182 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3779 Anthoceros agrestis HOM05D004285 ORTHO05D005176 1.6e-19 100.5 186 39.8
MSTRG.22052 Avicennia marina HOM05D004285 ORTHO05D005176 1.6e-19 100.5 182 41.2
Sc03g0010160 Simmondsia chinensis HOM05D004285 ORTHO05D005176 1.6e-19 100.5 170 41.2
AL6G19650 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 2.7e-19 99.8 180 37.2
EL10Ac8g20044 Beta vulgaris HOM05D004285 ORTHO05D005176 2.7e-19 99.8 182 40.7
Ca_16982_v3 Cicer arietinum L. HOM05D004285 ORTHO05D005176 2.7e-19 99.8 170 40.6
Mapoly0073s0065 Marchantia polymorpha HOM05D004285 ORTHO05D005176 2.7e-19 99.8 214 37.9
SGA_v2.0_scaffold12G06217 Striga asiatica HOM05D004285 ORTHO05D005176 3.6e-19 99.4 191 39.3
Thecc.01G137100 Theobroma cacao HOM05D004285 ORTHO05D005176 3.6e-19 99.4 198 36.4
Lj1g0004585 Lotus japonicus HOM05D004285 ORTHO05D005176 4.7e-19 99.0 156 42.9
Manes.06G003800 Manihot esculenta HOM05D004285 ORTHO05D005176 4.7e-19 99.0 211 37.0
Potri.005G067700 Populus trichocarpa HOM05D004285 ORTHO05D005176 4.7e-19 99.0 156 42.3
Glyma.04G210200 Glycine max HOM05D004285 ORTHO05D005176 6.1e-19 98.6 156 42.3
Glyma.06G155800 Glycine max HOM05D004285 ORTHO05D005176 6.1e-19 98.6 156 42.3
HanXRQChr09g0241311 Helianthus annuus HOM05D004285 ORTHO05D005176 6.1e-19 98.6 170 41.2
Oeu050306.1 Olea europaea HOM05D004285 ORTHO05D005176 6.1e-19 98.6 156 42.9
Hund21406 Selenicereus undatus HOM05D004285 ORTHO05D005176 6.1e-19 98.6 202 36.6
TPR.G33552 Trifolium pratense HOM05D004285 ORTHO05D005176 6.1e-19 98.6 170 41.8
unitig_736.g22477 Utricularia gibba HOM05D004285 ORTHO05D005176 6.1e-19 98.6 207 38.6
Atru.chr4.994 Acer truncatum HOM05D004285 ORTHO05D005176 8.0e-19 98.2 175 39.4
Peaxi162Scf00169g00092 Petunia axillaris HOM05D004285 ORTHO05D005176 8.0e-19 98.2 173 40.5
CiPaw.03G117900 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.0e-18 97.8 156 41.0
Nitab4.5_0000668g0170 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.0e-18 97.8 170 40.6
Nitab4.5_0009744g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 1.0e-18 97.8 156 42.3
Sabra05G0055600 Salix brachista HOM05D004285 ORTHO05D005176 1.0e-18 97.8 170 40.0
SMO232G0091 Selaginella moellendorffii HOM05D004285 ORTHO05D005176 1.0e-18 97.8 198 34.8
GSVIVG01029745001 Vitis vinifera HOM05D004285 ORTHO05D005176 1.0e-18 97.8 221 34.8
BcaNung04632 Brassica carinata HOM05D004285 ORTHO05D005176 1.4e-18 97.4 208 33.7
BcaNung04637 Brassica carinata HOM05D004285 ORTHO05D005176 1.4e-18 97.4 208 33.7
Lalb_Chr11g0068611 Lupinus albus HOM05D004285 ORTHO05D005176 1.4e-18 97.4 156 41.7
Psat5g059640 Pisum sativum HOM05D004285 ORTHO05D005176 1.4e-18 97.4 170 40.0
Gohir.A05G382800 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.8e-18 97.1 179 38.5
Gohir.D04G032400 Gossypium hirsutum HOM05D004285 ORTHO05D005176 1.8e-18 97.1 179 38.5
Gorai.012G036800 Gossypium raimondii HOM05D004285 ORTHO05D005176 1.8e-18 97.1 179 38.5
TPR.G24222 Trifolium pratense HOM05D004285 ORTHO05D005176 1.8e-18 97.1 154 43.5
TWI75G0304 Tripterygium wilfordii HOM05D004285 ORTHO05D005176 1.8e-18 97.1 191 37.2
Cc03_g16000 Coffea canephora HOM05D004285 ORTHO05D005176 2.3e-18 96.7 182 39.0
MD15G1135100 Malus domestica HOM05D004285 ORTHO05D005176 2.3e-18 96.7 216 35.2
VMungo1309G0657 Vigna mungo HOM05D004285 ORTHO05D005176 2.3e-18 96.7 195 37.4
Actinidia20030 Actinidia chinensis HOM05D004285 ORTHO05D005176 3.0e-18 96.3 197 38.1
ATR0706G129 Amborella trichopoda HOM05D004285 ORTHO05D005176 3.0e-18 96.3 211 37.0
Cpa.g.sc37.8 Carica papaya HOM05D004285 ORTHO05D005176 3.0e-18 96.3 182 37.9
Dinv12984 Davidia involucrata HOM05D004285 ORTHO05D005176 3.0e-18 96.3 156 41.7
Duzib264G0533 Durio zibethinus HOM05D004285 ORTHO05D005176 3.0e-18 96.3 170 39.4
Potri.007G101500 Populus trichocarpa HOM05D004285 ORTHO05D005176 3.0e-18 96.3 170 40.0
QL10p041258 Quercus lobata HOM05D004285 ORTHO05D005176 3.0e-18 96.3 170 38.8
QL10p041526 Quercus lobata HOM05D004285 ORTHO05D005176 3.0e-18 96.3 170 38.8
VMungo1309G3080 Vigna mungo HOM05D004285 ORTHO05D005176 3.0e-18 96.3 171 39.8
Thhalv10004899m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 4.0e-18 95.9 201 34.3
CANSAT80G1716 Cannabis sativa HOM05D004285 ORTHO05D005176 5.2e-18 95.5 173 36.4
AUR62012692 Chenopodium quinoa HOM05D004285 ORTHO05D005176 5.2e-18 95.5 173 39.9
AUR62021963 Chenopodium quinoa HOM05D004285 ORTHO05D005176 5.2e-18 95.5 173 39.9
FvH4_4g10490 Fragaria vesca HOM05D004285 ORTHO05D005176 5.2e-18 95.5 191 36.1
Lj4g0011662 Lotus japonicus HOM05D004285 ORTHO05D005176 5.2e-18 95.5 156 41.7
Nitab4.5_0008205g0020 Nicotiana tabacum HOM05D004285 ORTHO05D005176 5.2e-18 95.5 185 40.0
Sabra07G0083700 Salix brachista HOM05D004285 ORTHO05D005176 5.2e-18 95.5 170 40.0
Aqoxy6G00309 Aquilegia oxysepala HOM05D004285 ORTHO05D005176 6.8e-18 95.1 156 40.4
AT5G09260 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 6.8e-18 95.1 155 40.6
CsaV3_4G030940 Cucumis sativus L. HOM05D004285 ORTHO05D005176 6.8e-18 95.1 173 38.7
Duzib187G0355 Durio zibethinus HOM05D004285 ORTHO05D005176 6.8e-18 95.1 156 41.0
Lalb_Chr08g0238191 Lupinus albus HOM05D004285 ORTHO05D005176 6.8e-18 95.1 156 41.0
Phvul.009G154500 Phaseolus vulgaris HOM05D004285 ORTHO05D005176 6.8e-18 95.1 156 41.0
Sp2g26940 Schrenkiella parvula HOM05D004285 ORTHO05D005176 6.8e-18 95.1 209 34.0
Sopen12g032480 Solanum pennellii HOM05D004285 ORTHO05D005176 6.8e-18 95.1 221 36.2
Haze_26675 Corylus avellana HOM05D004285 ORTHO05D005176 8.8e-18 94.7 192 38.5
MELO3C008970.2 Cucumis melo HOM05D004285 ORTHO05D005176 8.8e-18 94.7 173 38.7
CDE08G1470 Ceratophyllum demersum HOM05D004285 ORTHO05D005176 1.2e-17 94.4 203 34.5
FAN22G0010 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.2e-17 94.4 191 36.1
TAR628G0040 Trochodendron aralioides HOM05D004285 ORTHO05D005176 1.2e-17 94.4 182 37.9
Aa31LG1G18000 Aethionema arabicum HOM05D004285 ORTHO05D005176 1.5e-17 94.0 198 35.9
BcaB02g09769 Brassica carinata HOM05D004285 ORTHO05D005176 1.5e-17 94.0 209 33.0
MBI04_g38139_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 1.5e-17 94.0 210 35.7
HPP92_022156 Vanilla planifolia HOM05D004285 ORTHO05D005176 1.5e-17 94.0 205 36.1
CBR_g70720 Chara braunii HOM05D004285 ORTHO05D005176 2.0e-17 93.6 183 37.7
RcHm_v2.0_Chr4g0406031 Rosa chinensis HOM05D004285 ORTHO05D005176 2.0e-17 93.6 170 38.8
Carub.0008s2465 Capsella rubella HOM05D004285 ORTHO05D005176 4.4e-17 92.4 209 33.0
Cfa002202 Carpinus fangiana HOM05D004285 ORTHO05D005176 4.4e-17 92.4 171 37.4
Sed0015518 Sechium edule HOM05D004285 ORTHO05D005176 4.4e-17 92.4 173 37.6
BcaC01g02639 Brassica carinata HOM05D004285 ORTHO05D005176 5.7e-17 92.0 173 36.4
C03p62560 Brassica napus HOM05D004285 ORTHO05D005176 5.7e-17 92.0 173 36.4
BolC3t18513H Brassica oleracea HOM05D004285 ORTHO05D005176 5.7e-17 92.0 173 36.4
DCAR_001476 Daucus carota HOM05D004285 ORTHO05D005176 5.7e-17 92.0 170 39.4
TAR376G0205 Trochodendron aralioides HOM05D004285 ORTHO05D005176 5.7e-17 92.0 206 35.0
AT5G63880 Arabidopsis thaliana HOM05D004285 ORTHO05D005176 1.3e-16 90.9 209 32.1
Prupe.4G274300 Prunus persica HOM05D004285 ORTHO05D005176 1.3e-16 90.9 174 36.8
A06p30500 Brassica napus HOM05D004285 ORTHO05D005176 1.7e-16 90.5 155 38.1
CARHR277780 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.7e-16 90.5 156 37.2
Zm00001eb183830 Zea mays HOM05D004285 ORTHO05D005176 2.8e-16 89.7 213 36.2
Ciclev10002389m.g Citrus clementina HOM05D004285 ORTHO05D005176 6.3e-16 88.6 202 35.1
PSO675G1889 Papaver somniferum HOM05D004285 ORTHO05D005176 6.3e-16 88.6 170 37.6
Zm00001eb246180 Zea mays HOM05D004285 ORTHO05D005176 6.3e-16 88.6 176 38.1
AagrBONN_evm.TU.Sc2ySwM_117.2591 Anthoceros agrestis HOM05D004285 ORTHO05D005176 8.3e-16 88.2 212 34.4
Aa31LG3G17740 Aethionema arabicum HOM05D004285 ORTHO05D005176 2.4e-15 86.7 180 33.9
PSO170G3147 Papaver somniferum HOM05D004285 ORTHO05D005176 3.1e-15 86.3 170 37.1
Cre13.g589700 Chlamydomonas reinhardtii HOM05D004285 ORTHO05D005176 4.1e-15 85.9 174 37.4
THA.LOC104818421 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 4.1e-15 85.9 180 35.0
Sp6g34050 Schrenkiella parvula HOM05D004285 ORTHO05D005176 5.4e-15 85.5 180 33.9
arahy.Tifrunner.gnm1.ann1.054DCV Arachis hypogaea HOM05D004285 ORTHO05D005176 7.0e-15 85.1 170 37.1
arahy.Tifrunner.gnm1.ann1.GQS5IM Arachis hypogaea HOM05D004285 ORTHO05D005176 7.0e-15 85.1 170 37.1
Medtr3g096680 Medicago truncatula HOM05D004285 ORTHO05D005176 9.2e-15 84.7 193 35.2
PSO407G0164 Papaver somniferum HOM05D004285 ORTHO05D005176 9.2e-15 84.7 170 35.9
THA.LOC104819347 Tarenaya hassleriana HOM05D004285 ORTHO05D005176 1.2e-14 84.3 180 34.4
Thhalv10014638m.g Eutrema salsugineum HOM05D004285 ORTHO05D005176 2.0e-14 83.6 180 33.9
FAN12G0473 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.5e-14 82.8 127 40.9
Carub.0006s0781 Capsella rubella HOM05D004285 ORTHO05D005176 4.5e-14 82.4 180 33.3
Nn5g28435 Nelumbo nucifera HOM05D004285 ORTHO05D005176 4.5e-14 82.4 202 32.7
Os02g0596500 Oryza sativa ssp. japonica HOM05D004285 ORTHO05D005176 7.7e-14 81.6 202 34.7
BraA06t25999Z Brassica rapa HOM05D004285 ORTHO05D005176 2.3e-13 80.1 177 33.9
CAN.G566.38 Capsicum annuum HOM05D004285 ORTHO05D005176 2.9e-13 79.7 212 34.9
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 5.0e-13 79.0 191 31.4
Rhsim08G0027500 Rhododendron simsii HOM05D004285 ORTHO05D005176 5.0e-13 79.0 156 37.2
Haze_25379 Corylus avellana HOM05D004285 ORTHO05D005176 6.6e-13 78.6 241 29.9
AL8G41110 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 8.6e-13 78.2 209 29.7
BcaB08g37222 Brassica carinata HOM05D004285 ORTHO05D005176 8.6e-13 78.2 184 32.6
Solyc12g096650.2 Solanum lycopersicum HOM05D004285 ORTHO05D005176 1.1e-12 77.8 221 33.0
FAN10G2762 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.5e-12 77.4 201 31.3
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 1.9e-12 77.0 184 32.1
CiPaw.04G079800 Carya illinoinensis HOM05D004285 ORTHO05D005176 1.9e-12 77.0 170 35.3
Lsat_1_v5_gn_4_38601 Lactuca sativa HOM05D004285 ORTHO05D005176 1.9e-12 77.0 183 35.0
FvH4_7g03820 Fragaria vesca HOM05D004285 ORTHO05D005176 2.5e-12 76.6 201 31.8
Eucgr.H05139 Eucalyptus grandis HOM05D004285 ORTHO05D005176 3.3e-12 76.3 185 32.4
FAN06G1556 Fragaria x ananassa HOM05D004285 ORTHO05D005176 3.3e-12 76.3 201 31.8
Oeu022909.3 Olea europaea HOM05D004285 ORTHO05D005176 1.6e-11 73.9 132 39.4
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 2.1e-11 73.6 164 35.4
COL.COLO4_35812 Corchorus olitorius HOM05D003519 ORTHO05D004443 2.8e-11 73.2 169 35.5
Nitab4.5_0000013g0100 Nicotiana tabacum HOM05D004285 ORTHO05D005176 2.8e-11 73.2 191 35.6
CAN.G607.7 Capsicum annuum HOM05D004285 ORTHO05D005176 1.0e-10 71.2 213 32.9
CARHR204160 Cardamine hirsuta HOM05D004285 ORTHO05D005176 1.0e-10 71.2 163 34.4
Lj2A489T51 Lonicera japonica HOM05D004285 ORTHO05D005176 1.8e-10 70.5 135 37.0
Peaxi162Scf01205g00036 Petunia axillaris HOM05D004285 ORTHO05D005176 2.3e-10 70.1 179 33.5
Pp3c2_32100 Physcomitrium patens HOM05D004285 ORTHO05D005176 2.3e-10 70.1 164 35.4
BraA10t44845Z Brassica rapa HOM05D004285 ORTHO05D005176 5.7e-09 65.5 202 29.7
vmacro18460 Vaccinium macrocarpon HOM05D004285 ORTHO05D005176 1.3e-08 64.3 149 36.2
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 2.9e-08 63.2 213 27.7
ClCG04G001580 Citrullus lanatus HOM05D004285 ORTHO05D005176 8.3e-08 61.6 184 30.4
Cfa023619 Carpinus fangiana HOM05D004285 ORTHO05D122138 1.4e-07 60.8 193 28.0
AagrBONN_evm.TU.Sc2ySwM_344.1024 Anthoceros agrestis HOM05D004285 ORTHO05D005176 2.4e-07 60.1 84 45.2
Migut.G00927 Erythranthe guttata HOM05D004285 ORTHO05D005176 2.4e-07 60.1 83 47.0
MCO14G274 Micromonas commoda HOM05D004285 ORTHO05D005176 3.2e-07 59.7 172 30.8
PRCOL_00005830 Prasinoderma coloniale HOM05D004285 ORTHO05D005176 4.1e-07 59.3 181 30.4
C09p68060 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-06 57.4 119 32.8
C09p68120 Brassica napus HOM05D004285 ORTHO05D005176 1.6e-06 57.4 119 32.8
FAN12G2135 Fragaria x ananassa HOM05D004285 ORTHO05D005176 1.6e-06 57.4 105 35.2
MBI18_g28836_MAGBIO Magnolia biondii HOM05D004285 ORTHO05D005176 2.0e-06 57.0 103 37.9
AL697U10010 Arabidopsis lyrata HOM05D004285 ORTHO05D005176 7.8e-06 55.1 74 41.9


User provided reference genes

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