Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 0.0e+00 1667.5 840 100.0
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 8.9e-146 521.9 826 37.2
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 1.5e-145 521.2 834 37.3
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 1.7e-144 517.7 828 36.2
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 2.4e-143 513.8 828 36.0
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 2.4e-143 513.8 825 36.1
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 3.2e-143 513.5 825 36.8
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 4.1e-143 513.1 836 36.8
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 3.5e-142 510.0 847 36.6
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 6.0e-142 509.2 825 36.4
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 3.0e-141 506.9 834 36.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 3.9e-141 506.5 833 36.7
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 8.6e-141 505.4 828 36.2
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 8.6e-141 505.4 825 36.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 1.5e-140 504.6 833 36.6
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 1.5e-140 504.6 828 36.4
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 3.3e-140 503.4 825 36.2
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 4.3e-140 503.1 833 36.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 2.8e-139 500.4 846 36.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 2.8e-139 500.4 828 36.4
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 2.8e-139 500.4 825 36.4
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 3.6e-139 500.0 828 35.6
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 3.6e-139 500.0 824 36.0
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 3.6e-139 500.0 844 34.8
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 3.6e-139 500.0 831 36.1
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 4.7e-139 499.6 829 35.9
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 4.7e-139 499.6 829 36.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 1.1e-138 498.4 828 36.4
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 1.8e-138 497.7 824 35.2
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 1.8e-138 497.7 844 34.8
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 2.3e-138 497.3 844 34.7
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 2.3e-138 497.3 844 34.6
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 2.3e-138 497.3 829 36.4
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 3.1e-138 496.9 848 35.7
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 3.1e-138 496.9 848 35.7
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 3.1e-138 496.9 828 36.1
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 4.0e-138 496.5 829 35.8
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 4.0e-138 496.5 848 35.7
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 4.0e-138 496.5 848 35.7
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 4.0e-138 496.5 848 35.7
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 5.2e-138 496.1 825 35.5
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 6.8e-138 495.7 834 36.5
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 6.8e-138 495.7 828 35.9
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 8.9e-138 495.4 834 36.5
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 1.2e-137 495.0 830 36.1
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 1.2e-137 495.0 834 36.2
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 2.6e-137 493.8 829 35.6
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 3.4e-137 493.4 828 35.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 3.4e-137 493.4 848 35.6
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 3.4e-137 493.4 832 36.7
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 7.5e-137 492.3 847 35.4
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 3.7e-136 490.0 834 36.1
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 3.7e-136 490.0 828 35.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 4.9e-136 489.6 828 35.9
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 4.9e-136 489.6 830 36.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 4.9e-136 489.6 827 35.3
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 8.3e-136 488.8 829 36.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 1.1e-135 488.4 827 35.2
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 1.4e-135 488.0 841 36.5
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 1.9e-135 487.6 828 35.4
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.4e-135 487.3 828 35.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 3.2e-135 486.9 825 35.5
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 3.2e-135 486.9 824 35.9
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 5.4e-135 486.1 832 35.7
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 7.1e-135 485.7 848 35.1
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 1.6e-134 484.6 824 35.3
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 2.1e-134 484.2 848 35.3
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 2.1e-134 484.2 848 35.3
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 2.1e-134 484.2 830 36.0
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 2.1e-134 484.2 892 34.4
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 3.5e-134 483.4 848 35.3
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 6.0e-134 482.6 834 35.0
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 7.8e-134 482.3 828 35.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 1.3e-133 481.5 800 36.0
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 1.7e-133 481.1 829 35.3
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 5.1e-133 479.6 848 34.8
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 6.6e-133 479.2 825 35.4
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 8.6e-133 478.8 879 34.8
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 1.5e-132 478.0 795 36.6
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 1.5e-132 478.0 836 34.8
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 5.6e-132 476.1 829 35.2
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 4.7e-131 473.0 903 32.8
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 3.1e-130 470.3 829 35.5
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 5.2e-130 469.5 833 35.2
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 6.8e-130 469.2 892 34.4
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 8.9e-130 468.8 903 32.3
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 2.2e-128 464.2 859 34.2
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 8.4e-128 462.2 748 36.5
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 7.1e-127 459.1 833 34.7
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 3.5e-126 456.8 931 33.0
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.1e-124 451.8 861 33.9
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 9.6e-124 448.7 827 33.4
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 6.9e-122 442.6 852 33.8
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 2.6e-121 440.7 840 33.0
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 1.6e-115 421.4 732 35.1
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 1.4e-114 418.3 615 38.2
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 4.2e-111 406.8 630 37.9
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 1.9e-103 381.3 829 32.6
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.1e-102 377.9 679 35.9
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 7.6e-97 359.4 825 31.0
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 3.3e-92 344.0 826 30.6
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.3e-91 342.0 443 42.2
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 1.4e-90 338.6 624 33.7
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 6.9e-90 336.3 800 30.0
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 4.6e-86 323.6 843 29.3
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.1e-82 309.3 834 30.5
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.0e-80 305.8 461 36.0
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 2.8e-75 287.7 641 31.7
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.2e-70 272.3 997 26.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 5.7e-68 263.5 394 34.5
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.1e-66 257.3 591 30.5
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.0e-56 226.1 462 33.8
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.9e-55 221.9 348 33.9
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.5e-55 220.3 327 34.9
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 5.5e-55 220.3 420 36.2
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.6e-44 184.9 331 37.5
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 4.5e-41 174.1 422 27.3
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 7.3e-39 166.8 359 33.7
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 6.1e-38 163.7 329 35.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 7.5e-36 156.8 212 38.2
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 4.1e-34 151.0 315 34.0
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-31 142.9 248 33.9
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.9e-26 125.6 352 28.7
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.0e-24 119.8 286 32.2
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 2.4e-18 98.6 237 29.1
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 4.1e-18 97.8 93 44.1
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-15 89.4 114 36.8
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 1.9e-15 89.0 151 33.1
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 9.2e-10 70.1 85 45.9
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-09 69.3 89 44.9
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 1.6e-09 69.3 84 36.9
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-08 66.6 82 43.9
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 6.6e-08 63.9 119 32.8
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 1.1e-07 63.2 86 34.9
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-07 61.6 82 41.5
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.2e-06 59.7 110 28.2
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 3.6e-06 58.2 80 33.8


User provided reference genes

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