Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025943 Carpinus fangiana HOM05D000780 ORTHO05D008187 0.0e+00 1475.3 858 100.0
Mapoly0063s0053 Marchantia polymorpha HOM05D000780 ORTHO05D008187 4.8e-22 110.9 192 39.6
Sp5g21080 Schrenkiella parvula HOM05D000780 ORTHO05D008187 8.5e-19 100.1 200 37.5
A07p33060 Brassica napus HOM05D000780 ORTHO05D008187 3.2e-18 98.2 200 35.5
BraA07t30934Z Brassica rapa HOM05D000780 ORTHO05D008187 3.2e-18 98.2 200 35.5
TAR365G0867 Trochodendron aralioides HOM05D000780 ORTHO05D008187 4.2e-18 97.8 194 37.6
Eucgr.B02158 Eucalyptus grandis HOM05D000780 ORTHO05D008187 7.2e-18 97.1 197 37.1
Thhalv10019185m.g Eutrema salsugineum HOM05D000780 ORTHO05D008187 7.2e-18 97.1 200 37.0
BcaC08g46086 Brassica carinata HOM05D000780 ORTHO05D008187 1.6e-17 95.9 200 35.5
C06p39320 Brassica napus HOM05D000780 ORTHO05D008187 2.7e-17 95.1 200 35.5
BolC6t39025H Brassica oleracea HOM05D000780 ORTHO05D008187 2.7e-17 95.1 200 35.5
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 2.7e-17 95.1 199 35.2
SMO172G0199 Selaginella moellendorffii HOM05D000780 ORTHO05D008187 2.7e-17 95.1 196 37.8
BcaB01g01289 Brassica carinata HOM05D000780 ORTHO05D008187 3.6e-17 94.7 200 37.0
Atru.chr2.1118 Acer truncatum HOM05D000780 ORTHO05D008187 6.1e-17 94.0 194 35.1
CSS0012715 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.1e-17 94.0 197 35.0
CSS0043062 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D008187 6.1e-17 94.0 197 35.0
CAN.G1311.4 Capsicum annuum HOM05D000780 ORTHO05D008187 6.1e-17 94.0 203 36.0
Aqoxy5G00096 Aquilegia oxysepala HOM05D000780 ORTHO05D008187 8.0e-17 93.6 197 34.0
vmacro19977 Vaccinium macrocarpon HOM05D000780 ORTHO05D008187 8.0e-17 93.6 179 39.1
Ciclev10022342m.g Citrus clementina HOM05D000780 ORTHO05D008187 1.0e-16 93.2 197 34.5
Lsat_1_v5_gn_9_45901 Lactuca sativa HOM05D000780 ORTHO05D008187 1.0e-16 93.2 194 35.6
Actinidia06829 Actinidia chinensis HOM05D000780 ORTHO05D008187 1.4e-16 92.8 194 35.6
ATR0724G057 Amborella trichopoda HOM05D000780 ORTHO05D008187 1.4e-16 92.8 90 52.2
Cc09_g03050 Coffea canephora HOM05D000780 ORTHO05D008187 2.3e-16 92.0 197 35.0
HPP92_012831 Vanilla planifolia HOM05D000780 ORTHO05D008187 2.3e-16 92.0 205 35.1
AT5G38890 Arabidopsis thaliana HOM05D000780 ORTHO05D008187 3.0e-16 91.7 197 34.5
Peaxi162Scf00077g00146 Petunia axillaris HOM05D000780 ORTHO05D008187 3.0e-16 91.7 135 41.5
Pp3c22_21010 Physcomitrium patens HOM05D000780 ORTHO05D008187 3.0e-16 91.7 200 35.0
Thecc.05G266200 Theobroma cacao HOM05D000780 ORTHO05D008187 3.0e-16 91.7 199 35.2
Nn1g03034 Nelumbo nucifera HOM05D000780 ORTHO05D008187 4.0e-16 91.3 194 36.1
DCAR_005521 Daucus carota HOM05D000780 ORTHO05D008187 5.2e-16 90.9 93 48.4
HanXRQChr15g0491391 Helianthus annuus HOM05D000780 ORTHO05D008187 5.2e-16 90.9 194 35.1
Nitab4.5_0000841g0110 Nicotiana tabacum HOM05D000780 ORTHO05D008187 5.2e-16 90.9 202 36.1
Os02g0815800 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D008187 5.2e-16 90.9 200 35.5
Cre07.g312750 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D008187 6.7e-16 90.5 190 38.9
Nitab4.5_0003148g0010 Nicotiana tabacum HOM05D000780 ORTHO05D008187 6.7e-16 90.5 202 35.6
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 6.7e-16 90.5 190 34.2
AL7G51540 Arabidopsis lyrata HOM05D000780 ORTHO05D008187 8.8e-16 90.1 197 34.0
Lalb_Chr06g0168371 Lupinus albus HOM05D000780 ORTHO05D008187 8.8e-16 90.1 194 35.6
PGR142G2101 Punica granatum HOM05D000780 ORTHO05D008187 8.8e-16 90.1 197 34.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 1.2e-15 89.7 199 35.2
Migut.F02051 Erythranthe guttata HOM05D000780 ORTHO05D008187 1.2e-15 89.7 194 36.1
Sed0008093 Sechium edule HOM05D000780 ORTHO05D008187 1.5e-15 89.4 199 34.2
PGSC0003DMG400028708 Solanum tuberosum HOM05D000780 ORTHO05D008187 1.5e-15 89.4 199 35.2
THA.LOC104821579 Tarenaya hassleriana HOM05D000780 ORTHO05D008187 1.5e-15 89.4 134 41.0
BcaB03g15301 Brassica carinata HOM05D000780 ORTHO05D008187 2.0e-15 89.0 177 36.7
Carub.0007s3696 Capsella rubella HOM05D000780 ORTHO05D008187 2.0e-15 89.0 197 34.5
Solyc04g050480.4 Solanum lycopersicum HOM05D000780 ORTHO05D008187 2.0e-15 89.0 199 34.7
Aa31LG2G2020 Aethionema arabicum HOM05D000780 ORTHO05D008187 2.6e-15 88.6 197 34.5
CsaV3_3G029860 Cucumis sativus L. HOM05D000780 ORTHO05D008187 2.6e-15 88.6 194 35.1
SalBow1G0848 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.6e-15 88.6 194 35.6
Sopen04g021260 Solanum pennellii HOM05D000780 ORTHO05D008187 2.6e-15 88.6 202 34.7
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 3.3e-15 88.2 199 35.2
GSVIVG01026325001 Vitis vinifera HOM05D000780 ORTHO05D008187 3.3e-15 88.2 197 34.5
MELO3C026663.2 Cucumis melo HOM05D000780 ORTHO05D008187 4.4e-15 87.8 194 35.1
ECA232G3805 Erigeron canadensis HOM05D000780 ORTHO05D008187 4.4e-15 87.8 195 34.4
Hma1.2p1_0123F.1_g058210 Hydrangea macrophylla HOM05D000780 ORTHO05D008187 4.4e-15 87.8 199 34.2
Manes.08G142200 Manihot esculenta HOM05D000780 ORTHO05D008187 5.7e-15 87.4 198 34.8
Potri.013G050400 Populus trichocarpa HOM05D000780 ORTHO05D008187 5.7e-15 87.4 201 34.8
QL01p042037 Quercus lobata HOM05D000780 ORTHO05D008187 5.7e-15 87.4 83 54.2
SEGI_30710 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 5.7e-15 87.4 90 53.3
SEGI_35156 Sequoiadendron giganteum HOM05D000780 ORTHO05D008187 5.7e-15 87.4 199 35.2
EL10Ac4g09772 Beta vulgaris HOM05D000780 ORTHO05D008187 7.5e-15 87.0 197 35.5
CDE08G0869 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 7.5e-15 87.0 202 35.6
Gohir.A13G161900 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.5e-15 87.0 194 35.1
Gohir.D13G172100 Gossypium hirsutum HOM05D000780 ORTHO05D008187 7.5e-15 87.0 194 35.1
arahy.Tifrunner.gnm1.ann1.A1PM7K Arachis hypogaea HOM05D000780 ORTHO05D008187 9.7e-15 86.7 199 34.7
Glyma.10G167500 Glycine max HOM05D000780 ORTHO05D008187 9.7e-15 86.7 199 34.7
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 9.7e-15 86.7 202 34.2
Lj2A46T71 Lonicera japonica HOM05D000780 ORTHO05D008187 1.3e-14 86.3 192 36.5
PSO832G2551 Papaver somniferum HOM05D000780 ORTHO05D008187 1.3e-14 86.3 199 34.7
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 1.7e-14 85.9 200 34.0
MD12G1250600 Malus domestica HOM05D000780 ORTHO05D008187 1.7e-14 85.9 195 36.9
MCO11G401 Micromonas commoda HOM05D000780 ORTHO05D008187 1.7e-14 85.9 209 34.0
MSTRG.9218 Avicennia marina HOM05D000780 ORTHO05D008187 2.2e-14 85.5 197 34.0
Cfa006318 Carpinus fangiana HOM05D000780 ORTHO05D008187 2.2e-14 85.5 204 32.8
AUR62006990 Chenopodium quinoa HOM05D000780 ORTHO05D008187 2.2e-14 85.5 200 34.0
PSO674G0050 Papaver somniferum HOM05D000780 ORTHO05D008187 2.2e-14 85.5 198 34.8
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.2e-14 85.5 200 34.0
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 3.7e-14 84.7 197 34.0
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 3.7e-14 84.7 200 34.0
Ah.06g187920 Amaranthus hybridus HOM05D000780 ORTHO05D008187 1.4e-13 82.8 83 51.8
CARHR263660 Cardamine hirsuta HOM05D000780 ORTHO05D008187 1.8e-13 82.4 197 33.0
TPR.G10275 Trifolium pratense HOM05D000780 ORTHO05D008187 1.8e-13 82.4 201 32.8
CANSAT54G1591 Cannabis sativa HOM05D000780 ORTHO05D008187 5.3e-13 80.9 199 34.2
Prupe.6G352700 Prunus persica HOM05D000780 ORTHO05D008187 5.3e-13 80.9 194 34.0
CDE07G0101 Ceratophyllum demersum HOM05D000780 ORTHO05D008187 9.1e-13 80.1 130 39.2
FvH4_6g01510 Fragaria vesca HOM05D000780 ORTHO05D008187 3.5e-12 78.2 197 33.0
FAN05G1554 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-12 77.8 197 33.0
FAN05G3511 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-12 77.8 197 33.0
FAN14G4371 Fragaria x ananassa HOM05D003786 ORTHO05D008187 4.5e-12 77.8 197 33.0
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 5.9e-12 77.4 204 32.8
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.3e-11 76.3 180 32.2
RcHm_v2.0_Chr3g0449181 Rosa chinensis HOM05D000780 ORTHO05D008187 1.3e-11 76.3 199 33.2
QL03p032337 Quercus lobata HOM05D000780 ORTHO05D008187 2.2e-11 75.5 250 31.2
Sc08g0004580 Simmondsia chinensis HOM05D000780 ORTHO05D008187 2.2e-11 75.5 145 35.9
Thecc.07G153800 Theobroma cacao HOM05D000780 ORTHO05D008187 3.8e-11 74.7 91 45.1
QL01p042023 Quercus lobata HOM05D000780 ORTHO05D008187 5.0e-11 74.3 249 30.9
Hund21757 Selenicereus undatus HOM05D000780 ORTHO05D008187 5.0e-11 74.3 202 32.2
Psat6g127280 Pisum sativum HOM05D000780 ORTHO05D008187 2.5e-10 72.0 135 35.6
PRCOL_00002874 Prasinoderma coloniale HOM05D000780 ORTHO05D008187 2.5e-10 72.0 195 34.4
Sopen03g007540 Solanum pennellii HOM05D001865 ORTHO05D001815 9.4e-10 70.1 189 28.6
Solyc03g043700.3 Solanum lycopersicum HOM05D001865 ORTHO05D001815 2.1e-09 68.9 191 27.7
Glyma.20G221600 Glycine max HOM05D000780 ORTHO05D008187 4.7e-09 67.8 112 38.4
PGSC0003DMG400016679 Solanum tuberosum HOM05D001865 ORTHO05D001815 4.7e-09 67.8 189 28.6
Gorai.013G188600 Gossypium raimondii HOM05D000780 ORTHO05D008187 8.0e-09 67.0 210 31.0
FAN14G4130 Fragaria x ananassa HOM05D003786 ORTHO05D004375 1.0e-08 66.6 134 36.6
SGA_v2.0_scaffold62G21470 Striga asiatica HOM05D000780 ORTHO05D008187 2.3e-08 65.5 90 41.1
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.0e-07 62.4 168 33.3
Nitab4.5_0000036g0510 Nicotiana tabacum HOM05D001865 ORTHO05D001815 3.4e-07 61.6 189 25.9
Peaxi162Scf00003g00217 Petunia axillaris HOM05D001865 ORTHO05D001815 4.4e-07 61.2 225 27.6
Thhalv10020852m.g Eutrema salsugineum HOM05D001865 ORTHO05D001815 1.7e-06 59.3 189 25.9
TWI53G1739 Tripterygium wilfordii HOM05D001865 ORTHO05D001815 1.7e-06 59.3 227 26.4
SalBow1G8050 Salvia bowleyana HOM05D000780 ORTHO05D008187 2.2e-06 58.9 54 53.7
CAN.G1161.49 Capsicum annuum HOM05D001865 ORTHO05D001815 2.8e-06 58.5 189 26.5
Dinv06000 Davidia involucrata HOM05D000780 ORTHO05D008187 2.8e-06 58.5 58 50.0
Nitab4.5_0003360g0060 Nicotiana tabacum HOM05D001865 ORTHO05D001815 2.8e-06 58.5 225 26.2
SalBow1G5753 Salvia bowleyana HOM05D000780 ORTHO05D008187 3.7e-06 58.2 160 32.5
PGSC0003DMG400030649 Solanum tuberosum HOM05D001865 ORTHO05D001815 4.8e-06 57.8 181 26.5
Ah.14g086950 Amaranthus hybridus HOM05D000215 ORTHO05D002239 6.3e-06 57.4 285 24.2
CARHR077460 Cardamine hirsuta HOM05D001865 ORTHO05D001815 6.3e-06 57.4 189 25.4
AL3G13110 Arabidopsis lyrata HOM05D001865 ORTHO05D001815 8.3e-06 57.0 189 25.4
AT3G03440 Arabidopsis thaliana HOM05D001865 ORTHO05D001815 8.3e-06 57.0 189 25.4
MD04G1233000 Malus domestica HOM05D000780 ORTHO05D008187 8.3e-06 57.0 104 39.4


User provided reference genes

Program Settings