Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025655 Carpinus fangiana HOM05D004741 ORTHO05D005454 0.0e+00 1216.1 601 100.0
TPR.G1862 Trifolium pratense HOM05D004741 ORTHO05D005454 2.0e-83 314.3 421 42.3
Psat5g034520 Pisum sativum HOM05D004741 ORTHO05D005454 5.0e-82 309.7 420 40.2
CBR_g10907 Chara braunii HOM05D004741 ORTHO05D005454 4.2e-81 306.6 411 40.6
Cre02.g146950 Chlamydomonas reinhardtii HOM05D004741 ORTHO05D005454 9.4e-81 305.4 418 41.9
Glyma.04G059700 Glycine max HOM05D004741 ORTHO05D005454 1.2e-80 305.1 421 40.4
Ca_15788_v3 Cicer arietinum L. HOM05D004741 ORTHO05D005454 2.1e-80 304.3 420 41.4
arahy.Tifrunner.gnm1.ann1.68HE9A Arachis hypogaea HOM05D004741 ORTHO05D005454 4.6e-80 303.1 404 41.6
arahy.Tifrunner.gnm1.ann1.HM8GSV Arachis hypogaea HOM05D004741 ORTHO05D005454 6.1e-80 302.8 404 41.6
Sc02g0008350 Simmondsia chinensis HOM05D004741 ORTHO05D005454 1.8e-79 301.2 404 42.3
Medtr3g105810 Medicago truncatula HOM05D004741 ORTHO05D005454 3.0e-79 300.4 420 39.8
ClCG08G013810 Citrullus lanatus HOM05D004741 ORTHO05D005454 5.1e-79 299.7 402 41.8
Manes.03G006700 Manihot esculenta HOM05D004741 ORTHO05D005454 1.1e-78 298.5 418 40.9
CiPaw.07G232700 Carya illinoinensis HOM05D004741 ORTHO05D005454 1.5e-78 298.1 404 41.3
MSTRG.20476 Avicennia marina HOM05D004741 ORTHO05D005454 5.7e-78 296.2 404 41.6
QL02p018098 Quercus lobata HOM05D004741 ORTHO05D005454 5.7e-78 296.2 404 41.3
VMungo1309G1293 Vigna mungo HOM05D004741 ORTHO05D005454 5.7e-78 296.2 421 40.1
CsaV3_2G032600 Cucumis sativus L. HOM05D004741 ORTHO05D005454 7.4e-78 295.8 404 41.1
Mapoly0014s0124 Marchantia polymorpha HOM05D004741 ORTHO05D005454 7.4e-78 295.8 400 40.8
Lalb_Chr08g0244491 Lupinus albus HOM05D004741 ORTHO05D005454 9.7e-78 295.4 404 41.3
MELO3C011313.2 Cucumis melo HOM05D004741 ORTHO05D005454 1.3e-77 295.0 404 41.1
Lj1g0020479 Lotus japonicus HOM05D004741 ORTHO05D005454 1.3e-77 295.0 422 41.0
Migut.K00575 Erythranthe guttata HOM05D004741 ORTHO05D005454 1.7e-77 294.7 406 41.6
Sed0002897 Sechium edule HOM05D004741 ORTHO05D005454 2.8e-77 293.9 404 40.8
BcaNung04120 Brassica carinata HOM05D004741 ORTHO05D005454 3.7e-77 293.5 400 40.8
Phvul.009G085900 Phaseolus vulgaris HOM05D004741 ORTHO05D005454 3.7e-77 293.5 404 40.8
CSS0005545 Camellia sinensis var. sinensis HOM05D004741 ORTHO05D005454 4.8e-77 293.1 404 41.1
AUR62035754 Chenopodium quinoa HOM05D004741 ORTHO05D005454 4.8e-77 293.1 404 41.1
vmacro21376 Vaccinium macrocarpon HOM05D004741 ORTHO05D005454 4.8e-77 293.1 402 40.8
Zm00001eb215780 Zea mays HOM05D004741 ORTHO05D005454 4.8e-77 293.1 412 40.3
Nitab4.5_0006397g0010 Nicotiana tabacum HOM05D004741 ORTHO05D005454 8.2e-77 292.4 409 40.6
PGSC0003DMG400002300 Solanum tuberosum HOM05D004741 ORTHO05D005454 8.2e-77 292.4 409 41.3
Thecc.09G013800 Theobroma cacao HOM05D004741 ORTHO05D005454 8.2e-77 292.4 402 40.5
Lsat_1_v5_gn_6_106561 Lactuca sativa HOM05D004741 ORTHO05D005454 1.1e-76 292.0 403 39.5
CAN.G673.1 Capsicum annuum HOM05D004741 ORTHO05D005454 1.8e-76 291.2 406 41.9
FAN15G2922 Fragaria x ananassa HOM05D004741 ORTHO05D005454 5.3e-76 289.7 404 40.1
TWI32G1217 Tripterygium wilfordii HOM05D004741 ORTHO05D005454 5.3e-76 289.7 401 40.4
TAR625G0772 Trochodendron aralioides HOM05D004741 ORTHO05D005454 5.3e-76 289.7 404 40.3
BcaNung01502 Brassica carinata HOM05D004741 ORTHO05D005454 6.9e-76 289.3 400 40.2
Lsat_1_v5_gn_4_135621 Lactuca sativa HOM05D004741 ORTHO05D005454 9.1e-76 288.9 403 39.7
Sp7g29560 Schrenkiella parvula HOM05D004741 ORTHO05D005454 9.1e-76 288.9 400 39.2
Sopen07g006470 Solanum pennellii HOM05D004741 ORTHO05D005454 9.1e-76 288.9 408 40.9
BraA03t15138Z Brassica rapa HOM05D004741 ORTHO05D005454 1.2e-75 288.5 401 40.6
COL.COLO4_18967 Corchorus olitorius HOM05D004741 ORTHO05D005454 1.2e-75 288.5 402 40.0
Atru.chr7.2571 Acer truncatum HOM05D004741 ORTHO05D005454 1.5e-75 288.1 404 40.6
C07p58870 Brassica napus HOM05D004741 ORTHO05D005454 2.0e-75 287.7 403 40.2
ECA246G1320 Erigeron canadensis HOM05D004741 ORTHO05D005454 2.0e-75 287.7 405 39.5
Potri.018G015300 Populus trichocarpa HOM05D004741 ORTHO05D005454 2.0e-75 287.7 401 40.9
Solyc07g017640.2 Solanum lycopersicum HOM05D004741 ORTHO05D005454 2.0e-75 287.7 409 40.8
Aa31LG2G18560 Aethionema arabicum HOM05D004741 ORTHO05D005454 2.6e-75 287.3 406 39.2
SMO284G0001 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 4.5e-75 286.6 404 39.9
RcHm_v2.0_Chr6g0299131 Rosa chinensis HOM05D004741 ORTHO05D005454 5.9e-75 286.2 404 40.1
unitig_744.g24377 Utricularia gibba HOM05D004741 ORTHO05D005454 5.9e-75 286.2 413 39.7
BcaB03g12718 Brassica carinata HOM05D004741 ORTHO05D005454 1.0e-74 285.4 400 39.5
BraA08t33808Z Brassica rapa HOM05D004741 ORTHO05D005454 1.0e-74 285.4 404 39.1
MD15G1043800 Malus domestica HOM05D004741 ORTHO05D005454 1.0e-74 285.4 401 39.9
A03p60970 Brassica napus HOM05D004741 ORTHO05D005454 1.3e-74 285.0 401 40.4
FvH4_2g41360 Fragaria vesca HOM05D004741 ORTHO05D005454 1.3e-74 285.0 404 39.4
Peaxi162Scf00005g04810 Petunia axillaris HOM05D004741 ORTHO05D005454 1.3e-74 285.0 402 40.5
EL10Ac1g02297 Beta vulgaris HOM05D004741 ORTHO05D005454 1.7e-74 284.6 404 40.1
BolC7t46334H Brassica oleracea HOM05D004741 ORTHO05D005454 1.7e-74 284.6 401 40.1
Duzib168G2074 Durio zibethinus HOM05D004741 ORTHO05D005454 1.7e-74 284.6 402 39.8
SMO145G0212 Selaginella moellendorffii HOM05D004741 ORTHO05D005454 1.7e-74 284.6 404 39.9
GSVIVG01009251001 Vitis vinifera HOM05D004741 ORTHO05D005454 1.7e-74 284.6 401 39.9
Nn8g39668 Nelumbo nucifera HOM05D004741 ORTHO05D005454 2.9e-74 283.9 403 40.9
AL7G20240 Arabidopsis lyrata HOM05D004741 ORTHO05D005454 5.0e-74 283.1 402 39.6
Dinv22023 Davidia involucrata HOM05D004741 ORTHO05D005454 8.5e-74 282.3 402 40.0
Cfa013018 Carpinus fangiana HOM05D004741 ORTHO05D005454 1.4e-73 281.6 433 38.1
Sabra18G0018800 Salix brachista HOM05D004741 ORTHO05D005454 1.9e-73 281.2 401 40.6
A08p18460 Brassica napus HOM05D004741 ORTHO05D005454 3.2e-73 280.4 404 38.9
Gohir.D11G176300 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.2e-73 280.0 405 40.5
AT4G31770 Arabidopsis thaliana HOM05D004741 ORTHO05D005454 5.5e-73 279.6 402 39.1
Aqoxy5G01951 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 7.2e-73 279.3 400 40.5
CARHR239670 Cardamine hirsuta HOM05D004741 ORTHO05D005454 7.2e-73 279.3 403 38.7
DCAR_020033 Daucus carota HOM05D004741 ORTHO05D005454 7.2e-73 279.3 402 39.3
Thhalv10025305m.g Eutrema salsugineum HOM05D004741 ORTHO05D005454 9.4e-73 278.9 421 38.2
Carub.0007s0879 Capsella rubella HOM05D004741 ORTHO05D005454 1.2e-72 278.5 404 38.6
Oeu016078.1 Olea europaea HOM05D004741 ORTHO05D005454 1.2e-72 278.5 403 39.0
CDE06G0415 Ceratophyllum demersum HOM05D004741 ORTHO05D005454 1.6e-72 278.1 404 39.9
C03p87550 Brassica napus HOM05D004741 ORTHO05D005454 2.1e-72 277.7 409 38.9
BolC3t21075H Brassica oleracea HOM05D004741 ORTHO05D005454 2.1e-72 277.7 409 38.9
Lj4A81G69 Lonicera japonica HOM05D004741 ORTHO05D005454 6.1e-72 276.2 447 37.4
RcHm_v2.0_Chr2g0135121 Rosa chinensis HOM05D004741 ORTHO05D005454 6.1e-72 276.2 404 39.9
Cc00_g23510 Coffea canephora HOM05D004741 ORTHO05D005454 1.0e-71 275.4 402 39.3
PSO210G2241 Papaver somniferum HOM05D004741 ORTHO05D005454 1.0e-71 275.4 403 39.0
Pp3c24_19510 Physcomitrium patens HOM05D004741 ORTHO05D005454 2.3e-71 274.2 409 38.1
THA.LOC104803607 Tarenaya hassleriana HOM05D004741 ORTHO05D005454 3.9e-71 273.5 403 38.5
Eucgr.C04030 Eucalyptus grandis HOM05D004741 ORTHO05D005454 5.1e-71 273.1 401 39.4
HanXRQChr10g0277671 Helianthus annuus HOM05D004741 ORTHO05D005454 8.8e-71 272.3 397 38.5
PSO761G0470 Papaver somniferum HOM05D004741 ORTHO05D005454 3.3e-70 270.4 401 39.2
Cpa.g.sc40.1 Carica papaya HOM05D004741 ORTHO05D005454 7.4e-70 269.2 340 43.8
SEGI_18909 Sequoiadendron giganteum HOM05D004741 ORTHO05D005454 7.4e-70 269.2 401 39.2
MCO02G476 Micromonas commoda HOM05D004741 ORTHO05D005454 1.3e-69 268.5 337 43.0
Atru.BG.288.p Acer truncatum HOM05D004741 ORTHO05D005454 2.8e-69 267.3 401 39.7
ATR0767G225 Amborella trichopoda HOM05D004741 ORTHO05D005454 1.5e-67 261.5 400 37.2
SalBow7G1987 Salvia bowleyana HOM05D004741 ORTHO05D005454 6.5e-66 256.1 362 41.4
SalBow7G0863 Salvia bowleyana HOM05D004741 ORTHO05D005454 1.1e-65 255.4 362 41.4
Aqoxy1G00870 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 1.9e-65 254.6 403 39.2
MBI16_g14670_MAGBIO Magnolia biondii HOM05D004741 ORTHO05D005454 2.5e-65 254.2 392 39.0
Aqoxy4G02579 Aquilegia oxysepala HOM05D004741 ORTHO05D005454 6.1e-64 249.6 375 39.2
SGA_v2.0_scaffold443G51691 Striga asiatica HOM05D004741 ORTHO05D005454 8.0e-64 249.2 391 38.6
BcaNung01500 Brassica carinata HOM05D004741 ORTHO05D005454 1.4e-63 248.4 391 38.1
PRCOL_00004462 Prasinoderma coloniale HOM05D004741 ORTHO05D005454 3.0e-63 247.3 437 35.7
Ah.04g152730 Amaranthus hybridus HOM05D004741 ORTHO05D005454 3.3e-62 243.8 410 37.6
HPP92_007721 Vanilla planifolia HOM05D004741 ORTHO05D005454 2.2e-58 231.1 365 38.1
Gohir.A05G415901 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.0e-58 229.9 297 41.8
Haze_27111 Corylus avellana HOM05D004741 ORTHO05D005454 1.1e-57 228.8 419 33.2
Gohir.1Z049533 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-56 225.3 393 36.4
Dinv44899 Davidia involucrata HOM05D004741 ORTHO05D005454 1.6e-56 224.9 311 40.2
MD08G1051300 Malus domestica HOM05D004741 ORTHO05D005454 1.1e-52 212.2 287 42.5
Gohir.A11G330400 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-52 211.8 239 47.3
Gohir.A02G000200 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.0e-51 208.0 239 46.4
Nitab4.5_0000159g0030 Nicotiana tabacum HOM05D004741 ORTHO05D005454 2.0e-51 208.0 200 49.5
Rhsim06G0068400 Rhododendron simsii HOM05D004741 ORTHO05D005454 4.2e-49 200.3 408 33.1
FvH4_6g29560 Fragaria vesca HOM05D004741 ORTHO05D005454 7.2e-49 199.5 341 35.8
SGA_v2.0_scaffold24G10244 Striga asiatica HOM05D004741 ORTHO05D005454 1.4e-47 195.3 200 47.0
SGA_v2.0_scaffold48G18066 Striga asiatica HOM05D004741 ORTHO05D005454 1.4e-47 195.3 347 36.0
FAN14G3005 Fragaria x ananassa HOM05D004741 ORTHO05D005454 2.3e-47 194.5 341 35.5
Prupe.1G397300 Prunus persica HOM05D004741 ORTHO05D005454 5.7e-46 189.9 309 36.2
Hund05236 Selenicereus undatus HOM05D004741 ORTHO05D005454 5.7e-46 189.9 308 37.0
BcaC01g01061 Brassica carinata HOM05D004741 ORTHO05D005454 1.3e-45 188.7 345 33.9
BcaB02g11404 Brassica carinata HOM05D004741 ORTHO05D005454 6.3e-45 186.4 155 54.2
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.1e-44 182.6 351 33.3
Gohir.A02G000050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 3.8e-42 177.2 165 51.5
Gohir.A03G000005 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-40 172.2 165 51.5
AUR62033828 Chenopodium quinoa HOM05D004741 ORTHO05D005454 1.4e-39 168.7 373 33.0
Gohir.A09G249600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.3e-37 162.2 172 46.5
Gohir.A07G233600 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-36 158.7 405 31.4
PSO210G0837 Papaver somniferum HOM05D004741 ORTHO05D005454 1.9e-33 148.3 164 44.5
Gohir.A12G001100 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.1e-32 144.8 310 32.6
Gohir.1Z049489 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.5e-30 138.7 161 47.2
Gohir.1Z049306 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-28 132.1 117 53.0
Gohir.1Z049408 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-28 132.1 117 53.0
Gohir.1Z049565 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.4e-28 132.1 117 53.0
Gohir.1Z049424 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.6e-27 128.6 117 52.1
AagrBONN_evm.TU.Sc2ySwM_369.559 Anthoceros agrestis HOM05D004741 ORTHO05D005454 3.6e-24 117.5 226 33.2
MD13G1228500 Malus domestica HOM05D004741 ORTHO05D005454 8.9e-23 112.8 117 45.3
Lsat_1_v5_gn_9_90121 Lactuca sativa HOM05D000676 ORTHO05D001458 4.4e-22 110.5 87 55.2
Gohir.A12G001050 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.8e-22 110.2 96 56.2
RcHm_v2.0_Chr1g0357361 Rosa chinensis HOM05D004741 ORTHO05D005454 1.9e-20 105.1 255 31.0
Gohir.A07G000083 Gossypium hirsutum HOM05D004741 ORTHO05D005454 4.6e-19 100.5 199 33.2
Sopen07g006070 Solanum pennellii HOM05D004741 ORTHO05D005454 6.8e-15 86.7 86 47.7
Os03g0725300 Oryza sativa ssp. japonica HOM05D004741 ORTHO05D005454 7.1e-12 76.6 87 46.0
Gohir.D12G000832 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.2e-12 76.3 70 47.1
Gohir.A04G148266 Gossypium hirsutum HOM05D004741 ORTHO05D005454 5.1e-10 70.5 222 26.1


User provided reference genes

Program Settings