Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025466 Carpinus fangiana HOM05D000006 ORTHO05D004030 3.8e-293 1010.7 504 100.0
Haze_26687 Corylus avellana HOM05D000006 ORTHO05D004030 1.2e-94 351.3 471 42.3
CBR_g17677 Chara braunii HOM05D000006 ORTHO05D004030 6.4e-83 312.4 434 39.2
Pp3c4_18030 Physcomitrium patens HOM05D000006 ORTHO05D004030 7.8e-81 305.4 434 38.9
Mapoly0014s0119 Marchantia polymorpha HOM05D000006 ORTHO05D004030 1.0e-80 305.1 434 39.4
Aqoxy5G01525 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 3.0e-80 303.5 434 39.2
HPP92_004738 Vanilla planifolia HOM05D000006 ORTHO05D004030 6.6e-80 302.4 486 37.4
Sc23g0000920 Simmondsia chinensis HOM05D000006 ORTHO05D004030 8.7e-80 302.0 489 37.4
ATR0564G159 Amborella trichopoda HOM05D000006 ORTHO05D004030 1.1e-79 301.6 489 36.2
EL10Ac1g00041 Beta vulgaris HOM05D000006 ORTHO05D004030 1.5e-79 301.2 434 39.2
C09p67790 Brassica napus HOM05D000006 ORTHO05D004030 1.5e-79 301.2 486 36.6
BolC9t59541H Brassica oleracea HOM05D000006 ORTHO05D004030 1.5e-79 301.2 486 36.6
Cfa015957 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.5e-79 301.2 278 50.4
Glyma.06G316400 Glycine max HOM05D000006 ORTHO05D004030 1.5e-79 301.2 434 38.9
TPR.G12257 Trifolium pratense HOM05D000006 ORTHO05D004030 1.5e-79 301.2 434 39.2
Atru.chr13.1315 Acer truncatum HOM05D000006 ORTHO05D004030 1.9e-79 300.8 479 38.2
Atru.chr13.1359 Acer truncatum HOM05D000006 ORTHO05D004030 1.9e-79 300.8 479 38.2
Eucgr.F04379 Eucalyptus grandis HOM05D000006 ORTHO05D004030 1.9e-79 300.8 479 37.6
Nitab4.5_0000051g0130 Nicotiana tabacum HOM05D000006 ORTHO05D004030 1.9e-79 300.8 305 46.6
TWI79G1190 Tripterygium wilfordii HOM05D000006 ORTHO05D004030 1.9e-79 300.8 434 38.7
Lalb_Chr18g0049021 Lupinus albus HOM05D000006 ORTHO05D004030 2.5e-79 300.4 476 38.0
Medtr3g007710 Medicago truncatula HOM05D000006 ORTHO05D004030 2.5e-79 300.4 434 38.9
PSO210G6583 Papaver somniferum HOM05D000006 ORTHO05D004030 2.5e-79 300.4 434 38.9
Thecc.08G116400 Theobroma cacao HOM05D000006 ORTHO05D004030 2.5e-79 300.4 482 36.9
MD15G1358600 Malus domestica HOM05D000006 ORTHO05D004030 3.3e-79 300.1 434 38.9
Os07g0626600 Oryza sativa ssp. japonica HOM05D000006 ORTHO05D004030 3.3e-79 300.1 434 38.9
PSO447G0296 Papaver somniferum HOM05D000006 ORTHO05D004030 3.3e-79 300.1 434 38.9
PGR142G3648 Punica granatum HOM05D000006 ORTHO05D004030 3.3e-79 300.1 278 49.3
SEGI_25942 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 3.3e-79 300.1 436 38.8
unitig_21.g20189 Utricularia gibba HOM05D000006 ORTHO05D004030 3.3e-79 300.1 434 38.5
arahy.Tifrunner.gnm1.ann1.6W1W5K Arachis hypogaea HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.7
arahy.Tifrunner.gnm1.ann1.B54JNT Arachis hypogaea HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.7
MSTRG.24147 Avicennia marina HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 37.8
Dinv26721 Davidia involucrata HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.9
Glyma.04G130300 Glycine max HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.7
Phvul.005G010700 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.9
Phvul.005G011500 Phaseolus vulgaris HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.9
Psat5g230080 Pisum sativum HOM05D000006 ORTHO05D004030 4.3e-79 299.7 436 39.0
QL05p058776 Quercus lobata HOM05D000006 ORTHO05D004030 4.3e-79 299.7 485 36.5
THA.LOC104819319 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.9
GSVIVG01008945001 Vitis vinifera HOM05D000006 ORTHO05D004030 4.3e-79 299.7 434 38.9
CiPaw.06G024600 Carya illinoinensis HOM05D000006 ORTHO05D004030 5.6e-79 299.3 434 38.9
DCAR_014281 Daucus carota HOM05D000006 ORTHO05D004030 5.6e-79 299.3 434 38.9
FvH4_5g38850 Fragaria vesca HOM05D000006 ORTHO05D004030 5.6e-79 299.3 436 39.0
FAN04G0021 Fragaria x ananassa HOM05D000006 ORTHO05D004030 5.6e-79 299.3 436 39.0
FAN13G0359 Fragaria x ananassa HOM05D000006 ORTHO05D004030 5.6e-79 299.3 436 39.0
FAN18G2681 Fragaria x ananassa HOM05D000006 ORTHO05D004030 5.6e-79 299.3 436 39.0
Gohir.A05G231900 Gossypium hirsutum HOM05D000006 ORTHO05D004030 5.6e-79 299.3 490 35.9
Gohir.A06G040700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 5.6e-79 299.3 434 38.9
Hund16820 Selenicereus undatus HOM05D000006 ORTHO05D004030 5.6e-79 299.3 278 49.6
TAR381G0924 Trochodendron aralioides HOM05D000006 ORTHO05D004030 5.6e-79 299.3 434 38.9
CSS0012091 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D004030 7.3e-79 298.9 436 39.0
Haze_00526 Corylus avellana HOM05D000006 ORTHO05D004030 7.3e-79 298.9 479 38.0
FAN08G2703 Fragaria x ananassa HOM05D000006 ORTHO05D004030 7.3e-79 298.9 436 39.0
MD08G1173300 Malus domestica HOM05D000006 ORTHO05D004030 7.3e-79 298.9 494 36.2
MSTRG.22428 Avicennia marina HOM05D000006 ORTHO05D004030 9.6e-79 298.5 434 37.6
CANSAT56G0745 Cannabis sativa HOM05D000006 ORTHO05D004030 9.6e-79 298.5 278 49.6
ECA247G3040 Erigeron canadensis HOM05D000006 ORTHO05D000091 9.6e-79 298.5 480 38.1
Lj3g0019564 Lotus japonicus HOM05D000006 ORTHO05D004030 9.6e-79 298.5 434 38.7
PRCOL_00001934 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 9.6e-79 298.5 508 35.6
Prupe.1G506200 Prunus persica HOM05D000006 ORTHO05D004030 9.6e-79 298.5 434 38.9
SalBow6G6076 Salvia bowleyana HOM05D000006 ORTHO05D004030 9.6e-79 298.5 278 49.3
AagrBONN_evm.TU.Sc2ySwM_344.1570 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.3e-78 298.1 434 38.9
BcaB08g37191 Brassica carinata HOM05D000006 ORTHO05D004030 1.3e-78 298.1 486 36.4
MELO3C022788.2 Cucumis melo HOM05D000006 ORTHO05D004030 1.3e-78 298.1 483 36.6
CsaV3_5G023540 Cucumis sativus L. HOM05D000006 ORTHO05D004030 1.3e-78 298.1 476 37.2
Lj4A550G32 Lonicera japonica HOM05D000006 ORTHO05D004030 1.3e-78 298.1 434 38.9
Lj4A578G72 Lonicera japonica HOM05D000006 ORTHO05D004030 1.3e-78 298.1 434 38.9
Nn1g05200 Nelumbo nucifera HOM05D000006 ORTHO05D004030 1.3e-78 298.1 434 38.5
RcHm_v2.0_Chr7g0240841 Rosa chinensis HOM05D000006 ORTHO05D004030 1.3e-78 298.1 436 39.0
Sabra05G0129200 Salix brachista HOM05D000006 ORTHO05D004030 1.3e-78 298.1 434 39.2
BcaB08g37162 Brassica carinata HOM05D000006 ORTHO05D004030 1.6e-78 297.7 479 37.8
CiPaw.05G229200 Carya illinoinensis HOM05D000006 ORTHO05D004030 1.6e-78 297.7 479 37.8
Ca_14036_v3 Cicer arietinum L. HOM05D000006 ORTHO05D004030 1.6e-78 297.7 436 38.5
Ciclev10001133m.g Citrus clementina HOM05D000006 ORTHO05D004030 1.6e-78 297.7 486 36.4
Haze_27167 Corylus avellana HOM05D000006 ORTHO05D004030 1.6e-78 297.7 466 38.2
Gohir.D05G234200 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.6e-78 297.7 434 38.7
Gohir.D06G041700 Gossypium hirsutum HOM05D000006 ORTHO05D004030 1.6e-78 297.7 434 38.7
Gorai.009G242400 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.6e-78 297.7 434 38.7
Gorai.010G046900 Gossypium raimondii HOM05D000006 ORTHO05D004030 1.6e-78 297.7 434 38.7
Potri.002G089500 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.1e-78 297.4 487 36.8
Potri.005G171700 Populus trichocarpa HOM05D000006 ORTHO05D004030 2.1e-78 297.4 434 38.9
TAR625G0616 Trochodendron aralioides HOM05D000006 ORTHO05D004030 2.1e-78 297.4 434 38.9
A10p27700 Brassica napus HOM05D000006 ORTHO05D004030 2.8e-78 297.0 479 37.8
BraA10t44822Z Brassica rapa HOM05D000006 ORTHO05D004030 2.8e-78 297.0 479 37.8
Lsat_1_v5_gn_1_12240 Lactuca sativa HOM05D000006 ORTHO05D004030 2.8e-78 297.0 482 37.8
SMO351G0268 Selaginella moellendorffii HOM05D000006 ORTHO05D004030 2.8e-78 297.0 434 38.2
Solyc11g013520.3 Solanum lycopersicum HOM05D000006 ORTHO05D004030 2.8e-78 297.0 434 38.2
Sopen11g008540 Solanum pennellii HOM05D000006 ORTHO05D004030 2.8e-78 297.0 434 38.2
Aa31LG3G17360 Aethionema arabicum HOM05D000006 ORTHO05D004030 3.6e-78 296.6 434 38.7
THA.LOC104799527 Tarenaya hassleriana HOM05D000006 ORTHO05D004030 3.6e-78 296.6 434 38.5
BcaC04g23307 Brassica carinata HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
A09p08740 Brassica napus HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
C09p09880 Brassica napus HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
BolC9t53896H Brassica oleracea HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
BraA09t36523Z Brassica rapa HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
Sp6g33660 Schrenkiella parvula HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.7
Sc01g0001570 Simmondsia chinensis HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.2
VMungo1080G1349 Vigna mungo HOM05D000006 ORTHO05D004030 4.8e-78 296.2 434 38.5
Actinidia23042 Actinidia chinensis HOM05D000006 ORTHO05D004030 6.2e-78 295.8 487 37.2
AT5G09740 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 6.2e-78 295.8 434 38.0
Cc04_g08910 Coffea canephora HOM05D000006 ORTHO05D004030 6.2e-78 295.8 434 38.7
Nitab4.5_0002496g0060 Nicotiana tabacum HOM05D000006 ORTHO05D004030 6.2e-78 295.8 434 38.2
AL6G20140 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 8.1e-78 295.4 479 35.9
AL8G42020 Arabidopsis lyrata HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
AT5G64610 Arabidopsis thaliana HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
Carub.0008s2540 Capsella rubella HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
CARHR278580 Cardamine hirsuta HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
COL.COLO4_21821 Corchorus olitorius HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
Migut.N03322 Erythranthe guttata HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.0
Thhalv10004220m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
Thhalv10013550m.g Eutrema salsugineum HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.5
Sp2g27670 Schrenkiella parvula HOM05D000006 ORTHO05D004030 8.1e-78 295.4 434 38.2
BcaB04g19978 Brassica carinata HOM05D000006 ORTHO05D004030 1.1e-77 295.0 434 38.2
Mapoly0014s0220 Marchantia polymorpha HOM05D000006 ORTHO05D004030 1.1e-77 295.0 452 38.3
Oeu001989.1 Olea europaea HOM05D000006 ORTHO05D004030 1.1e-77 295.0 436 38.3
Dinv27386 Davidia involucrata HOM05D000006 ORTHO05D004030 1.4e-77 294.7 434 38.7
HanXRQChr02g0044231 Helianthus annuus HOM05D000006 ORTHO05D004030 1.4e-77 294.7 480 37.5
SalBow7G0198 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.4e-77 294.7 434 38.0
SalBow7G3631 Salvia bowleyana HOM05D000006 ORTHO05D004030 1.4e-77 294.7 434 38.0
Sed0027470 Sechium edule HOM05D000006 ORTHO05D004030 1.4e-77 294.7 434 38.2
Zm00001eb328000 Zea mays HOM05D000006 ORTHO05D004030 1.4e-77 294.7 434 37.6
AUR62004690 Chenopodium quinoa HOM05D000006 ORTHO05D004030 9.0e-77 292.0 439 39.0
Actinidia03495 Actinidia chinensis HOM05D000006 ORTHO05D004030 2.0e-76 290.8 363 41.6
Ah.05g172680 Amaranthus hybridus HOM05D000006 ORTHO05D004030 2.0e-76 290.8 446 38.1
Aa31LG1G17340 Aethionema arabicum HOM05D000006 ORTHO05D004030 4.5e-76 289.7 434 37.8
Haze_26200 Corylus avellana HOM05D000006 ORTHO05D004030 7.6e-76 288.9 404 40.8
Cre03.g143907 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 1.3e-75 288.1 410 38.3
Rhsim11G0065000 Rhododendron simsii HOM05D000006 ORTHO05D004030 2.9e-75 287.0 444 38.1
CAN.G255.14 Capsicum annuum HOM05D000006 ORTHO05D004030 3.8e-75 286.6 436 38.3
Sabra02G0070500 Salix brachista HOM05D000006 ORTHO05D004030 6.4e-75 285.8 290 47.2
Oeu039581.2 Olea europaea HOM05D000006 ORTHO05D004030 1.4e-74 284.6 301 45.8
MCO10G273 Micromonas commoda HOM05D000006 ORTHO05D004030 1.9e-74 284.3 356 41.9
Peaxi162Scf00360g00314 Petunia axillaris HOM05D000006 ORTHO05D004030 3.2e-74 283.5 458 36.2
Aqoxy6G00495 Aquilegia oxysepala HOM05D000006 ORTHO05D004030 7.9e-73 278.9 248 50.4
ClCG03G009080 Citrullus lanatus HOM05D000006 ORTHO05D004030 5.1e-72 276.2 516 34.1
Cre13.g587150 Chlamydomonas reinhardtii HOM05D000006 ORTHO05D004030 2.5e-71 273.9 487 33.5
Duzib093G0061 Durio zibethinus HOM05D000006 ORTHO05D004030 6.2e-70 269.2 358 40.8
SGA_v2.0_scaffold25G11094 Striga asiatica HOM05D000006 ORTHO05D004030 5.3e-69 266.2 498 32.3
vmacro12808 Vaccinium macrocarpon HOM05D000006 ORTHO05D004030 9.0e-69 265.4 492 34.3
MCO09G855 Micromonas commoda HOM05D000006 ORTHO05D004030 2.0e-68 264.2 414 37.0
MCO10G130 Micromonas commoda HOM05D000006 ORTHO05D004030 2.2e-67 260.8 490 33.5
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 4.9e-67 259.6 343 37.3
Pp3c2_37980 Physcomitrium patens HOM05D000006 ORTHO05D004030 1.4e-66 258.1 494 34.6
CARHR203660 Cardamine hirsuta HOM05D000006 ORTHO05D004030 3.2e-66 256.9 404 37.9
Lj7C307G3 Lonicera japonica HOM05D000006 ORTHO05D004030 9.3e-66 255.4 278 45.0
AUR62023606 Chenopodium quinoa HOM05D000006 ORTHO05D004030 2.1e-65 254.2 434 35.7
Cfa027305 Carpinus fangiana HOM05D000006 ORTHO05D004030 2.7e-65 253.8 271 46.1
Duzib116G0798 Durio zibethinus HOM05D000006 ORTHO05D004030 1.0e-64 251.9 434 35.3
Haze_26386 Corylus avellana HOM05D000006 ORTHO05D004030 3.9e-64 250.0 280 45.4
MBI04_g34117_MAGBIO Magnolia biondii HOM05D000006 ORTHO05D004030 3.9e-64 250.0 363 37.7
Cpa.g.sc42.141 Carica papaya HOM05D000006 ORTHO05D004030 8.7e-64 248.8 225 52.0
PRCOL_00006094 Prasinoderma coloniale HOM05D000006 ORTHO05D004030 2.5e-63 247.3 301 41.5
Manes.18G072700 Manihot esculenta HOM05D000006 ORTHO05D004030 4.8e-62 243.0 221 52.0
Nn5g28927 Nelumbo nucifera HOM05D000006 ORTHO05D004030 8.2e-62 242.3 221 51.6
CAN.G222.83 Capsicum annuum HOM05D000006 ORTHO05D004030 9.0e-61 238.8 219 48.4
SEGI_33287 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 1.0e-56 225.3 212 50.5
CDE02G1825 Ceratophyllum demersum HOM05D000006 ORTHO05D004030 4.8e-54 216.5 201 50.7
TAR628G0303 Trochodendron aralioides HOM05D000006 ORTHO05D004030 5.9e-52 209.5 320 36.6
SEGI_24978 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 6.5e-43 179.5 177 47.5
PSO675G4731 Papaver somniferum HOM05D000006 ORTHO05D004030 1.1e-42 178.7 253 37.9
PSO541G6025 Papaver somniferum HOM05D000006 ORTHO05D004030 4.2e-42 176.8 251 37.8
SGA_v2.0_scaffold28G12032 Striga asiatica HOM05D000006 ORTHO05D004030 9.4e-42 175.6 288 35.8
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 7.9e-41 172.6 155 51.6
Gorai.011G166000 Gossypium raimondii HOM05D000006 ORTHO05D004030 5.1e-40 169.9 207 45.9
CAN.G959.48 Capsicum annuum HOM05D000006 ORTHO05D004030 2.7e-33 147.5 112 57.1
PSO210G6350 Papaver somniferum HOM05D000006 ORTHO05D004030 2.9e-27 127.5 235 31.9
SEGI_04115 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 2.5e-26 124.4 296 30.4
BcaC01g02690 Brassica carinata HOM05D000006 ORTHO05D004030 2.7e-25 120.9 209 34.9
Cfa026876 Carpinus fangiana HOM05D000006 ORTHO05D004030 1.5e-23 115.2 146 38.4
FAN25G2177 Fragaria x ananassa HOM05D000006 ORTHO05D004030 3.3e-23 114.0 76 63.2
arahy.Tifrunner.gnm1.ann1.10Y5RS Arachis hypogaea HOM05D000006 ORTHO05D004030 1.4e-21 108.6 156 36.5
TAR376G0202 Trochodendron aralioides HOM05D000006 ORTHO05D004030 1.6e-17 95.1 109 40.4
Zm00001eb109790 Zea mays HOM05D000006 ORTHO05D004030 3.0e-16 90.9 236 28.8
Gorai.012G004600 Gossypium raimondii HOM05D000006 ORTHO05D004030 5.2e-16 90.1 117 40.2
Gohir.D04G003466 Gossypium hirsutum HOM05D000006 ORTHO05D004030 6.8e-16 89.7 117 40.2
arahy.Tifrunner.gnm1.ann1.B34789 Arachis hypogaea HOM05D000006 ORTHO05D004030 1.5e-15 88.6 201 30.3
arahy.Tifrunner.gnm1.ann1.D5YD9F Arachis hypogaea HOM05D000006 ORTHO05D004030 2.6e-15 87.8 114 39.5
arahy.Tifrunner.gnm1.ann1.KN38JA Arachis hypogaea HOM05D000006 ORTHO05D004030 7.5e-15 86.3 174 31.0
A06p31330 Brassica napus HOM05D000006 ORTHO05D004030 2.7e-12 77.8 95 45.3
SEGI_16294 Sequoiadendron giganteum HOM05D000006 ORTHO05D004030 5.0e-11 73.6 81 34.6
CAN.G523.61 Capsicum annuum HOM05D001058 ORTHO05D000911 1.1e-10 72.4 119 33.6
Pp3c13_14710 Physcomitrium patens HOM05D000006 ORTHO05D004030 9.5e-10 69.3 71 46.5
Gorai.010G134900 Gossypium raimondii HOM05D000006 ORTHO05D047897 4.4e-07 60.5 38 63.2
Gohir.D08G161533 Gossypium hirsutum HOM05D000006 ORTHO05D047897 3.7e-06 57.4 38 60.5


User provided reference genes

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