Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa025411 Carpinus fangiana HOM05D004035 ORTHO05D004631 0.0e+00 2027.7 1038 100.0
Mapoly0160s0027 Marchantia polymorpha HOM05D004035 ORTHO05D004631 4.4e-62 244.2 1087 24.6
Pp3c10_5300 Physcomitrium patens HOM05D004035 ORTHO05D004631 4.1e-52 211.1 1098 23.0
Psat4g092560 Pisum sativum HOM05D004035 ORTHO05D004631 4.6e-51 207.6 1081 23.5
Medtr8g077680 Medicago truncatula HOM05D004035 ORTHO05D004631 2.5e-49 201.8 1063 23.0
LjContig00448g0016984 Lotus japonicus HOM05D004035 ORTHO05D004631 9.6e-49 199.9 1067 23.2
TPR.G34978 Trifolium pratense HOM05D004035 ORTHO05D004631 9.6e-49 199.9 1063 23.0
Migut.H00988 Erythranthe guttata HOM05D004035 ORTHO05D004631 3.6e-48 198.0 1075 22.4
EL10Ac6g15563 Beta vulgaris HOM05D004035 ORTHO05D004631 1.8e-47 195.7 1077 22.7
Ah.02g125200 Amaranthus hybridus HOM05D004035 ORTHO05D004631 2.4e-47 195.3 1075 23.2
AUR62007565 Chenopodium quinoa HOM05D004035 ORTHO05D004631 2.4e-47 195.3 1087 22.7
PSO675G4195 Papaver somniferum HOM05D004035 ORTHO05D004631 2.4e-47 195.3 1107 22.2
AUR62004050 Chenopodium quinoa HOM05D004035 ORTHO05D004631 3.1e-47 194.9 1087 22.9
TPR.G22289 Trifolium pratense HOM05D004035 ORTHO05D004631 4.0e-47 194.5 1081 23.0
Ca_22279_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 8.9e-47 193.4 1080 22.9
PSO541G3635 Papaver somniferum HOM05D004035 ORTHO05D004631 8.9e-47 193.4 1117 22.4
Lj1g0016074 Lotus japonicus HOM05D004035 ORTHO05D004631 1.5e-46 192.6 1072 23.2
Manes.02G093700 Manihot esculenta HOM05D004035 ORTHO05D004631 2.6e-46 191.8 1064 23.0
arahy.Tifrunner.gnm1.ann1.ZDS5RA Arachis hypogaea HOM05D004035 ORTHO05D004631 7.6e-46 190.3 1060 22.3
TAR362G0832 Trochodendron aralioides HOM05D004035 ORTHO05D004631 1.3e-45 189.5 1079 23.4
VMungo1215G2866 Vigna mungo HOM05D004035 ORTHO05D004631 1.7e-45 189.1 1086 23.1
CANSAT01G0227 Cannabis sativa HOM05D004035 ORTHO05D004631 2.2e-45 188.7 1106 23.1
Ca_24847_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 2.2e-45 188.7 1080 22.5
arahy.Tifrunner.gnm1.ann1.JC6DGE Arachis hypogaea HOM05D004035 ORTHO05D004631 2.9e-45 188.3 1067 22.3
CSS0025574 Camellia sinensis var. sinensis HOM05D004035 ORTHO05D004631 3.8e-45 188.0 1080 22.7
Lj2g0023524 Lotus japonicus HOM05D004035 ORTHO05D004631 3.8e-45 188.0 1066 22.8
Gorai.003G015100 Gossypium raimondii HOM05D004035 ORTHO05D004631 6.4e-45 187.2 1073 22.0
Psat2g159680 Pisum sativum HOM05D004035 ORTHO05D004631 6.4e-45 187.2 1082 23.3
TAR376G0366 Trochodendron aralioides HOM05D004035 ORTHO05D004631 6.4e-45 187.2 1071 22.8
Ciclev10024797m.g Citrus clementina HOM05D004035 ORTHO05D004631 8.4e-45 186.8 1068 22.3
Phvul.002G030300 Phaseolus vulgaris HOM05D004035 ORTHO05D004631 1.1e-44 186.4 1074 22.5
Lalb_Chr09g0322391 Lupinus albus HOM05D004035 ORTHO05D004631 2.4e-44 185.3 1082 22.5
MD02G1147600 Malus domestica HOM05D004035 ORTHO05D004631 2.4e-44 185.3 1079 22.7
Glyma.01G176000 Glycine max HOM05D004035 ORTHO05D004631 5.4e-44 184.1 1066 22.7
Atru.chr3.574 Acer truncatum HOM05D004035 ORTHO05D004631 1.2e-43 183.0 1076 22.8
Aqoxy6G01113 Aquilegia oxysepala HOM05D004035 ORTHO05D004631 1.6e-43 182.6 1069 22.2
Lj2C453G20 Lonicera japonica HOM05D004035 ORTHO05D004631 1.6e-43 182.6 1081 22.3
SGA_v2.0_scaffold276G46626 Striga asiatica HOM05D004035 ORTHO05D004631 2.7e-43 181.8 1102 22.1
Actinidia36560 Actinidia chinensis HOM05D004035 ORTHO05D004631 3.5e-43 181.4 1072 22.3
Rhsim02G0182400 Rhododendron simsii HOM05D004035 ORTHO05D004631 6.0e-43 180.6 1070 22.7
Glyma.11G068300 Glycine max HOM05D004035 ORTHO05D004631 7.8e-43 180.3 1065 22.6
Nn7g37554 Nelumbo nucifera HOM05D004035 ORTHO05D004631 7.8e-43 180.3 1102 22.7
Eucgr.H01269 Eucalyptus grandis HOM05D004035 ORTHO05D004631 1.0e-42 179.9 1088 22.3
RcHm_v2.0_Chr2g0101581 Rosa chinensis HOM05D004035 ORTHO05D004631 1.0e-42 179.9 1104 23.0
TWI73G0243 Tripterygium wilfordii HOM05D004035 ORTHO05D004631 1.0e-42 179.9 1079 22.3
FAN28G2497 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.7e-42 179.1 1086 22.7
CDE09G0689 Ceratophyllum demersum HOM05D004035 ORTHO05D004631 2.3e-42 178.7 1094 22.2
MD15G1261900 Malus domestica HOM05D004035 ORTHO05D004631 2.3e-42 178.7 1089 22.8
Prupe.7G154500 Prunus persica HOM05D004035 ORTHO05D004631 2.3e-42 178.7 1104 22.6
COL.COLO4_22081 Corchorus olitorius HOM05D004035 ORTHO05D004631 3.0e-42 178.3 1068 22.3
Duzib147G1708 Durio zibethinus HOM05D004035 ORTHO05D004631 3.9e-42 177.9 1100 22.6
FvH4_1g13311 Fragaria vesca HOM05D004035 ORTHO05D004631 3.9e-42 177.9 1077 22.6
Gohir.D03G014800 Gossypium hirsutum HOM05D004035 ORTHO05D004631 8.7e-42 176.8 1060 21.4
Actinidia12124 Actinidia chinensis HOM05D004035 ORTHO05D004631 1.9e-41 175.6 1089 22.5
Aa31LG6G13430 Aethionema arabicum HOM05D004035 ORTHO05D004631 1.9e-41 175.6 1088 22.7
FAN26G1872 Fragaria x ananassa HOM05D004035 ORTHO05D004631 1.9e-41 175.6 1104 23.0
Nitab4.5_0000178g0040 Nicotiana tabacum HOM05D004035 ORTHO05D004631 2.5e-41 175.3 1078 21.6
ECA246G3379 Erigeron canadensis HOM05D004035 ORTHO05D004631 5.6e-41 174.1 1086 22.5
QL06p046086 Quercus lobata HOM05D004035 ORTHO05D004631 7.3e-41 173.7 1094 22.2
ATR0743G236 Amborella trichopoda HOM05D004035 ORTHO05D004631 9.6e-41 173.3 1091 22.2
Cc03_g03620 Coffea canephora HOM05D004035 ORTHO05D004631 9.6e-41 173.3 1081 22.3
FAN19G0080 Fragaria x ananassa HOM05D004035 ORTHO05D004631 9.6e-41 173.3 1076 22.7
arahy.Tifrunner.gnm1.ann1.6E6Z42 Arachis hypogaea HOM05D004035 ORTHO05D004631 1.3e-40 172.9 1073 22.3
Gohir.D11G190900 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.6e-40 172.6 1072 22.5
Gorai.007G203400 Gossypium raimondii HOM05D004035 ORTHO05D004631 2.1e-40 172.2 1064 22.2
Potri.005G123000 Populus trichocarpa HOM05D004035 ORTHO05D004631 2.1e-40 172.2 1083 22.1
arahy.Tifrunner.gnm1.ann1.GM6JEQ Arachis hypogaea HOM05D004035 ORTHO05D004631 3.6e-40 171.4 1073 22.2
Medtr5g020140 Medicago truncatula HOM05D004035 ORTHO05D004631 4.8e-40 171.0 1023 23.6
HanXRQChr09g0261471 Helianthus annuus HOM05D004035 ORTHO05D004631 8.1e-40 170.2 1058 21.5
BraA03t15502Z Brassica rapa HOM05D004035 ORTHO05D004631 1.4e-39 169.5 1069 21.3
Gohir.A11G184400 Gossypium hirsutum HOM05D004035 ORTHO05D004631 1.4e-39 169.5 1080 21.9
Hma1.2p1_0400F.1_g144430 Hydrangea macrophylla HOM05D004035 ORTHO05D004631 1.4e-39 169.5 1089 21.8
A03p64370 Brassica napus HOM05D004035 ORTHO05D004631 1.8e-39 169.1 1069 21.1
BolC7t46602H Brassica oleracea HOM05D004035 ORTHO05D004631 3.1e-39 168.3 1069 21.3
Nn1g04984 Nelumbo nucifera HOM05D004035 ORTHO05D004631 4.0e-39 167.9 1070 22.1
C07p61810 Brassica napus HOM05D004035 ORTHO05D004631 5.3e-39 167.5 1069 21.2
Potri.007G025700 Populus trichocarpa HOM05D004035 ORTHO05D004631 5.3e-39 167.5 1082 21.3
PGR102G3072 Punica granatum HOM05D004035 ORTHO05D004631 6.9e-39 167.2 1102 22.3
Solyc02g085220.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 6.9e-39 167.2 1081 21.3
Os03g0715500 Oryza sativa ssp. japonica HOM05D004035 ORTHO05D004631 1.2e-38 166.4 1067 22.4
Ca_22265_v3 Cicer arietinum L. HOM05D004035 ORTHO05D004631 5.8e-38 164.1 1087 22.7
Sopen02g029920 Solanum pennellii HOM05D004035 ORTHO05D004631 3.8e-37 161.4 1081 21.1
Zm00001eb055180 Zea mays HOM05D004035 ORTHO05D004631 4.2e-36 157.9 1083 21.6
CAN.G1003.4 Capsicum annuum HOM05D004035 ORTHO05D004631 1.6e-35 156.0 1085 21.5
Sc03g0002970 Simmondsia chinensis HOM05D004035 ORTHO05D004631 4.6e-35 154.5 848 22.8
SMO145G0075 Selaginella moellendorffii HOM05D004035 ORTHO05D004631 3.0e-34 151.8 865 22.4
DCAR_017291 Daucus carota HOM05D004035 ORTHO05D004631 8.7e-34 150.2 934 22.2
Sabra07G0022700 Salix brachista HOM05D004035 ORTHO05D004631 8.7e-34 150.2 1094 21.1
Lalb_Chr16g0388281 Lupinus albus HOM05D004035 ORTHO05D004631 9.0e-31 140.2 913 21.6
Nitab4.5_0001385g0050 Nicotiana tabacum HOM05D004035 ORTHO05D004631 1.7e-29 136.0 1077 20.5
Gohir.A02G165200 Gossypium hirsutum HOM05D004035 ORTHO05D004631 6.0e-27 127.5 415 27.0
CARHR244970 Cardamine hirsuta HOM05D004035 ORTHO05D004631 1.3e-24 119.8 417 26.4
PRCOL_00006719 Prasinoderma coloniale HOM05D004035 ORTHO05D004631 1.6e-24 119.4 432 24.8
SEGI_13313 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 2.1e-24 119.0 525 23.2
unitig_52.g17587 Utricularia gibba HOM05D004035 ORTHO05D004631 3.7e-24 118.2 781 22.5
CBR_g34968 Chara braunii HOM05D004035 ORTHO05D004631 8.1e-24 117.1 772 23.1
MELO3C017565.2 Cucumis melo HOM05D004035 ORTHO05D004631 4.0e-23 114.8 1105 21.8
Thhalv10024305m.g Eutrema salsugineum HOM05D004035 ORTHO05D004631 9.0e-23 113.6 416 25.0
RcHm_v2.0_Chr2g0101101 Rosa chinensis HOM05D004035 ORTHO05D004631 9.0e-23 113.6 413 25.4
AT4G36630 Arabidopsis thaliana HOM05D004035 ORTHO05D004631 1.2e-22 113.2 416 24.8
AL7G14420 Arabidopsis lyrata HOM05D004035 ORTHO05D004631 1.5e-22 112.8 416 24.8
Carub.0007s0370 Capsella rubella HOM05D004035 ORTHO05D004631 2.6e-22 112.1 417 25.4
ClCG07G009230 Citrullus lanatus HOM05D004035 ORTHO05D004631 1.0e-21 110.2 1110 21.8
Thecc.01G133800 Theobroma cacao HOM05D004035 ORTHO05D004631 1.7e-21 109.4 1089 21.2
vmacro11086 Vaccinium macrocarpon HOM05D004035 ORTHO05D004631 2.2e-21 109.0 984 20.2
BcaB03g12382 Brassica carinata HOM05D004035 ORTHO05D004631 3.8e-21 108.2 425 24.9
Solyc07g056660.4 Solanum lycopersicum HOM05D004035 ORTHO05D004631 3.8e-21 108.2 1084 21.2
Sed0003321 Sechium edule HOM05D004035 ORTHO05D004631 4.9e-21 107.8 1123 21.5
Sopen07g030000 Solanum pennellii HOM05D004035 ORTHO05D004631 6.5e-21 107.5 1085 21.0
DCAR_025943 Daucus carota HOM05D004035 ORTHO05D004631 2.5e-20 105.5 1074 20.5
Oeu042265.1 Olea europaea HOM05D004035 ORTHO05D004631 1.6e-19 102.8 448 23.0
Cfa004306 Carpinus fangiana HOM05D004035 ORTHO05D004631 3.9e-18 98.2 1128 21.5
AagrBONN_evm.TU.Sc2ySwM_340.480 Anthoceros agrestis HOM05D004035 ORTHO05D004631 1.1e-17 96.7 342 26.0
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.9e-17 95.9 1084 21.7
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 1.6e-16 92.8 459 23.5
BcaC01g00456 Brassica carinata HOM05D004035 ORTHO05D004631 5.3e-15 87.8 694 21.2
CsaV3_4G005000 Cucumis sativus L. HOM05D004035 ORTHO05D004631 5.3e-15 87.8 286 23.8
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 5.3e-15 87.8 357 24.6
PGSC0003DMG400003507 Solanum tuberosum HOM05D004035 ORTHO05D004631 5.3e-15 87.8 503 21.1
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 9.0e-15 87.0 474 23.6
C03p80030 Brassica napus HOM05D004035 ORTHO05D004631 9.0e-15 87.0 740 21.2
Hund16431 Selenicereus undatus HOM05D004035 ORTHO05D004631 1.2e-14 86.7 352 24.1
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 1.5e-14 86.3 359 25.9
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 5.9e-14 84.3 360 24.4
CiPaw.01G038000 Carya illinoinensis HOM05D004035 ORTHO05D004631 1.0e-13 83.6 287 23.7
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 2.9e-13 82.0 477 23.1
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 3.8e-13 81.6 812 21.2
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 5.0e-13 81.3 489 23.1
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 6.5e-13 80.9 360 26.1
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 8.4e-13 80.5 472 22.0
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 8.4e-13 80.5 356 25.0
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 8.4e-13 80.5 358 23.2
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 1.1e-12 80.1 357 24.4
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 1.9e-12 79.3 357 23.2
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 2.5e-12 79.0 357 25.8
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 4.2e-12 78.2 356 25.6
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 4.2e-12 78.2 352 25.6
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 4.2e-12 78.2 367 24.3
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 9.3e-12 77.0 367 23.7
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 1.2e-11 76.6 357 23.2
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 2.3e-10 72.4 268 25.4
Haze_15090 Corylus avellana HOM05D004035 ORTHO05D004631 5.1e-10 71.2 200 26.5
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 8.7e-10 70.5 367 23.2
SalBow8G0583 Salvia bowleyana HOM05D004035 ORTHO05D004631 1.1e-09 70.1 203 26.1
HPP92_004247 Vanilla planifolia HOM05D004035 ORTHO05D004631 1.1e-09 70.1 256 26.6
SEGI_00418 Sequoiadendron giganteum HOM05D004035 ORTHO05D004631 1.1e-07 63.5 198 27.3
Dinv39986 Davidia involucrata HOM05D004035 ORTHO05D004631 1.8e-07 62.8 200 24.5
PRCOL_00002861 Prasinoderma coloniale HOM05D005380 ORTHO05D006601 1.8e-07 62.8 252 25.4
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 2.4e-07 62.4 392 21.7
Lalb_Chr16g0388271 Lupinus albus HOM05D004035 ORTHO05D004631 2.6e-06 58.9 180 30.6
Cpa.g.sc202.3 Carica papaya HOM05D004035 ORTHO05D004631 3.4e-06 58.5 193 25.9


User provided reference genes

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