Gene: Solyc02g085220.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g085220.4
  • Transcript Identifier Solyc02g085220.4.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 46194992-46205968 : negative

Gene Family Information

  • ID HOM05D004035
  • #Genes/#Species 174/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g085220.4.1
  • uniprot A0A3Q7F7E3
  • gene_id Solyc02g085220

Descriptions

  • Description Vacuolar sorting protein 39 (AHRD V3.3 *** A0A2U1PI44_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006886
IEA
InterProintracellular protein transport
GO:0016192
IEA
GOA Databasevesicle-mediated transport
GO:0016192
IEA
InterProvesicle-mediated transport
GO:0006914
IBA
GOA Databaseautophagy
GO:0034058
IBA
GOA Databaseendosomal vesicle fusion
GO:0007033
ISO
PLAZA Integrative Orthologyvacuole organization AT4G36630

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G36630

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IBA
GOA Databasemembrane
GO:0005737
IBA
GOA Databasecytoplasm
GO:0009705
ISO
PLAZA Integrative Orthologyplant-type vacuole membrane AT4G36630
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT4G36630
GO:0030897
ISO
PLAZA Integrative OrthologyHOPS complex AT4G36630

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
IPR001180 Citron homology (CNH) domain
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
IPR032914 Vam6/VPS39/TRAP1 family
Mapman id Description
22.3.4.9.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.HOPS/CORVET tethering complexes.HOPS-specific component VPS39