Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa023835 Carpinus fangiana HOM05D003404 ORTHO05D004052 0.0e+00 2546.9 1361 100.0
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 4.1e-92 344.4 1327 26.7
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 9.2e-92 343.2 1331 26.3
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.4e-87 329.3 1335 26.4
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.4e-87 329.3 1328 26.2
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 4.4e-86 324.3 1328 26.4
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 5.8e-86 323.9 1332 27.2
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 9.8e-86 323.2 1326 26.5
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 1.3e-85 322.8 1333 26.3
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 2.9e-85 321.6 1329 27.0
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 2.9e-85 321.6 1330 26.8
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 4.9e-85 320.9 1338 26.9
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 1.1e-84 319.7 1324 26.8
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 1.9e-84 318.9 1334 26.2
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 5.4e-84 317.4 1334 27.1
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 5.4e-84 317.4 1339 27.0
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 9.2e-84 316.6 1335 26.5
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.6e-83 315.8 1334 26.9
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 2.7e-83 315.1 1338 26.8
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 3.5e-83 314.7 1333 26.6
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 6.0e-83 313.9 1320 26.1
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 7.8e-83 313.5 1337 26.1
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 1.3e-82 312.8 1332 26.1
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.3e-82 312.0 1340 26.3
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.9e-82 311.2 1346 27.5
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 6.6e-82 310.5 1336 26.1
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 8.6e-82 310.1 1346 27.0
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.9e-81 308.9 1331 27.0
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 2.5e-81 308.5 1322 26.2
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 2.5e-81 308.5 1347 27.1
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 3.3e-81 308.1 1343 26.6
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 4.3e-81 307.8 1316 26.2
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 5.6e-81 307.4 1318 25.9
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 5.6e-81 307.4 1337 27.2
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 7.3e-81 307.0 1339 26.7
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 7.3e-81 307.0 1329 26.1
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 7.3e-81 307.0 1340 26.9
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 9.5e-81 306.6 1334 26.8
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.2e-80 306.2 1336 26.1
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 1.2e-80 306.2 1335 26.1
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 1.6e-80 305.8 1331 25.9
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 1.6e-80 305.8 1353 26.4
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 2.1e-80 305.4 1341 26.7
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.1e-80 305.4 1318 25.4
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 2.8e-80 305.1 1336 26.6
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.6e-80 304.7 1334 27.0
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.6e-80 304.7 1346 27.7
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 4.7e-80 304.3 1338 25.5
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 8.0e-80 303.5 1336 26.4
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 8.0e-80 303.5 1353 26.5
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.1e-79 303.1 1335 25.4
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.4e-79 302.8 1337 26.4
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 3.1e-79 301.6 1315 26.8
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 4.0e-79 301.2 1355 26.3
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 6.8e-79 300.4 1362 25.5
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 6.8e-79 300.4 1334 25.8
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 6.8e-79 300.4 1336 26.3
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.2e-78 299.7 1345 26.4
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 1.2e-78 299.7 1336 26.3
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 2.0e-78 298.9 1331 26.2
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 2.0e-78 298.9 1354 25.9
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 2.6e-78 298.5 1340 26.6
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 2.6e-78 298.5 1322 26.2
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 3.4e-78 298.1 1339 25.4
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 3.4e-78 298.1 1324 26.4
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 4.4e-78 297.7 1330 26.2
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 4.4e-78 297.7 1333 25.7
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 7.5e-78 297.0 1334 26.1
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 9.8e-78 296.6 1324 26.2
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 1.3e-77 296.2 1339 26.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 1.3e-77 296.2 1326 25.6
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.3e-77 296.2 1354 26.0
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 1.7e-77 295.8 1331 25.5
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 1.7e-77 295.8 1334 26.6
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.2e-77 295.4 1331 25.3
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 2.2e-77 295.4 1334 25.9
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 2.2e-77 295.4 1312 26.2
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 2.9e-77 295.0 1329 25.9
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 3.7e-77 294.7 1320 25.9
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 3.7e-77 294.7 1326 26.2
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 4.9e-77 294.3 1342 25.7
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 6.4e-77 293.9 1331 25.6
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 1.4e-76 292.7 1337 25.7
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 1.9e-76 292.4 1336 25.1
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 9.2e-76 290.0 1329 25.8
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 1.2e-75 289.7 1333 25.5
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 1.2e-75 289.7 1338 25.3
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 2.1e-75 288.9 1342 24.8
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 3.5e-75 288.1 1322 25.7
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 3.9e-74 284.6 1439 25.9
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 1.5e-73 282.7 1323 25.5
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 1.9e-73 282.3 1335 25.3
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.9e-73 282.3 1351 25.8
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 3.3e-73 281.6 1339 25.2
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 1.1e-71 276.6 1268 25.9
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 3.1e-71 275.0 1282 26.6
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 2.0e-70 272.3 1253 26.3
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 2.6e-70 271.9 1317 25.4
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 7.5e-70 270.4 1173 26.5
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 5.4e-68 264.2 1396 24.1
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 1.7e-66 259.2 1334 25.8
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 6.6e-66 257.3 1334 25.4
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 2.8e-64 251.9 1143 26.0
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 4.0e-63 248.1 1103 24.9
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 3.8e-61 241.5 1381 25.0
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 6.4e-61 240.7 1324 24.2
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 1.4e-60 239.6 1177 26.0
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.4e-60 237.7 1171 25.7
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 7.8e-59 233.8 921 26.9
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 8.7e-58 230.3 936 26.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 2.5e-57 228.8 1378 25.4
PRCOL_00003487 Prasinoderma coloniale HOM05D003404 ORTHO05D004052 2.8e-56 225.3 1327 24.0
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 1.2e-51 209.9 968 27.0
Cre03.g177053 Chlamydomonas reinhardtii HOM05D003404 ORTHO05D004052 7.8e-51 207.2 1391 23.9
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 1.3e-48 199.9 848 26.8
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 1.4e-47 196.4 1146 23.3
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 5.3e-47 194.5 826 26.9
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.8e-40 172.2 1030 25.6
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 6.9e-39 167.5 848 24.9
MCO07G702 Micromonas commoda HOM05D003404 ORTHO05D004052 1.0e-37 163.7 1321 22.9
Oeu028473.1 Olea europaea HOM05D003404 ORTHO05D004052 7.9e-27 127.5 416 27.9
ATR1089G005 Amborella trichopoda HOM05D003404 ORTHO05D004052 2.3e-26 125.9 417 30.2
Cpa.g.sc173.13 Carica papaya HOM05D003404 ORTHO05D004052 3.0e-26 125.6 305 29.2
MBI06_g14248_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 1.5e-17 96.7 425 26.1
Sabra01G0174400 Salix brachista HOM05D003404 ORTHO05D004052 1.4e-15 90.1 170 34.7
Os02g0169800 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 5.3e-15 88.2 348 24.7
Oeu028474.1 Olea europaea HOM05D003404 ORTHO05D004052 2.5e-12 79.3 446 25.1
Actinidia01636 Actinidia chinensis HOM05D003404 ORTHO05D004052 8.8e-10 70.9 201 27.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.5e-09 70.1 149 30.2
Lsat_1_v5_gn_2_40780 Lactuca sativa HOM05D003404 ORTHO05D004052 2.0e-09 69.7 267 27.7
Lsat_1_v5_gn_7_61421 Lactuca sativa HOM05D003404 ORTHO05D004052 7.4e-09 67.8 75 46.7
HPP92_028449 Vanilla planifolia HOM05D003404 ORTHO05D004052 9.7e-09 67.4 172 30.8
Thecc.06G018800 Theobroma cacao HOM05D003404 ORTHO05D004052 6.3e-08 64.7 96 38.5
arahy.Tifrunner.gnm1.ann1.GG9Z8N Arachis hypogaea HOM05D003404 ORTHO05D004052 1.4e-07 63.5 382 23.6
Lsat_1_v5_gn_8_147900 Lactuca sativa HOM05D003404 ORTHO05D004052 5.3e-07 61.6 141 34.0


User provided reference genes

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