Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2348.5 1306 100.0
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 3.2e-134 484.2 1373 29.3
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 7.9e-133 479.6 1325 27.2
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 2.4e-129 468.0 1347 28.9
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 2.4e-129 468.0 1337 29.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 9.9e-128 462.6 1347 28.9
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 1.3e-127 462.2 1341 30.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 2.9e-127 461.1 1322 27.2
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 2.9e-127 461.1 1333 28.3
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 4.9e-127 460.3 1328 27.2
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 4.2e-126 457.2 1351 28.9
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 5.5e-126 456.8 1337 27.8
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 5.5e-126 456.8 1361 29.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 9.3e-126 456.1 1340 28.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 9.3e-126 456.1 1345 28.3
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 2.1e-125 454.9 1334 27.9
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 2.7e-125 454.5 1339 28.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 4.6e-125 453.8 1325 27.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 7.9e-125 453.0 1338 27.4
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 1.3e-124 452.2 1348 28.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 1.8e-124 451.8 1360 28.4
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 3.0e-124 451.1 1340 28.7
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 6.7e-124 449.9 1350 28.6
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 6.7e-124 449.9 1326 27.2
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 6.7e-124 449.9 1351 28.4
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 1.5e-123 448.7 1334 27.4
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 2.5e-123 448.0 1320 27.0
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 2.5e-123 448.0 1341 28.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 4.3e-123 447.2 1342 29.4
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 4.3e-123 447.2 1338 27.1
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.3e-122 445.7 1336 28.9
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 1.6e-122 445.3 1335 28.4
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 1.6e-122 445.3 1322 27.1
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 2.8e-122 444.5 1335 26.9
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 6.2e-122 443.4 1347 27.7
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 6.2e-122 443.4 1339 27.2
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 8.2e-122 443.0 1350 28.3
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 1.4e-121 442.2 1384 28.5
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 2.4e-121 441.4 1355 28.0
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 9.0e-121 439.5 1365 27.3
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 9.0e-121 439.5 1362 28.5
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 2.0e-120 438.3 1347 27.2
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 7.6e-120 436.4 1355 27.9
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 1.0e-119 436.0 1346 28.0
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 1.0e-119 436.0 1362 28.6
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 1.3e-119 435.6 1335 26.9
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 2.5e-118 431.4 1377 27.6
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 1.2e-117 429.1 1320 27.2
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 2.7e-117 427.9 1338 27.9
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 4.6e-117 427.2 1397 27.6
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 1.1e-115 422.5 1328 27.2
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 1.1e-115 422.5 1378 26.7
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 1.5e-115 422.2 1373 26.7
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 9.7e-115 419.5 1336 26.9
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 1.6e-114 418.7 1363 27.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 1.6e-114 418.7 1368 27.0
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 2.2e-114 418.3 1368 27.0
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 4.8e-114 417.2 1415 27.1
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 1.4e-113 415.6 1329 26.4
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.5e-112 410.6 1360 27.6
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 4.5e-112 410.6 1344 27.9
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 5.9e-112 410.2 1310 27.3
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 3.8e-111 407.5 1323 28.4
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 2.5e-110 404.8 1339 26.4
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 4.2e-110 404.1 1317 26.0
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 5.5e-110 403.7 1337 26.2
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.4e-110 402.9 1274 28.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 2.1e-109 401.7 1339 26.2
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.7e-109 401.4 1358 27.5
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 3.6e-109 401.0 1423 27.5
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 6.7e-108 396.7 1275 27.1
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 5.7e-107 393.7 1391 27.8
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 1.2e-104 386.0 1336 25.4
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 1.0e-103 382.9 1339 26.7
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 3.8e-103 380.9 1329 26.0
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 4.4e-99 367.5 1447 24.9
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 4.8e-98 364.0 1573 24.7
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 7.7e-96 356.7 1273 25.0
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 2.7e-93 348.2 1373 26.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 2.2e-90 338.6 1236 24.8
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 4.0e-84 317.8 1256 24.8
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.3e-82 312.8 1343 24.2
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 1.2e-80 306.2 1231 25.0
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 5.0e-79 300.8 1339 25.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 4.7e-77 294.3 1420 23.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 3.8e-71 274.6 737 28.8
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.0e-68 266.5 752 28.7
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 4.5e-64 251.1 1084 23.2
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.7e-63 249.2 751 29.4
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 3.8e-63 248.1 656 29.6
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.2e-61 243.0 895 25.6
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-60 239.2 599 30.1
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-60 239.2 599 30.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 5.2e-60 237.7 728 28.0
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.5e-59 236.1 350 39.4
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 5.8e-59 234.2 774 25.5
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 6.4e-58 230.7 771 26.8
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 4.1e-57 228.0 312 42.0
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 4.6e-56 224.6 1003 24.1
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.7e-55 222.6 329 41.3
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 9.5e-54 216.9 204 54.4
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 6.2e-53 214.2 204 53.9
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.0e-52 211.5 194 54.6
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 6.8e-52 210.7 763 24.8
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 3.4e-51 208.4 641 26.5
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 5.8e-51 207.6 186 56.5
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 8.3e-50 203.8 238 46.6
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.4e-49 203.0 210 50.5
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.2e-48 199.9 631 26.6
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 3.5e-48 198.4 631 26.6
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 3.5e-48 198.4 560 28.8
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.5e-46 192.2 640 26.7
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 1.1e-44 186.8 202 50.0
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.1e-44 185.3 202 49.5
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 9.9e-43 180.3 747 25.0
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.5e-38 166.4 167 52.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.3e-30 138.3 140 55.0
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 7.3e-30 137.5 597 26.5
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 7.6e-27 127.5 120 54.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.2e-26 125.9 120 53.3
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.4e-25 123.2 130 53.1
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.8e-21 109.0 1019 21.0
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 4.0e-20 105.1 106 54.7
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 5.3e-20 104.8 166 38.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.2e-19 103.6 88 58.0
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 8.4e-18 97.4 71 62.0
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 4.6e-16 91.7 68 63.2
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 4.8e-13 81.6 520 23.5
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 4.0e-12 78.6 58 63.8
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 2.9e-10 72.4 65 55.4
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-09 69.7 464 24.1
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.5e-08 65.5 53 54.7
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 6.0e-08 64.7 116 37.1


User provided reference genes

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