Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 5.0e-307 1057.0 550 100.0
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 5.5e-19 100.1 297 27.9
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 7.1e-19 99.8 332 29.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.0e-17 94.4 309 27.8
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.0e-17 94.4 291 29.2
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.9e-17 94.0 300 28.3
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 5.1e-17 93.6 306 26.8
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 6.7e-17 93.2 307 26.7
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 8.7e-17 92.8 318 27.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 3.3e-16 90.9 298 26.5
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.3e-16 90.5 298 27.2
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 5.7e-16 90.1 294 27.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 5.7e-16 90.1 299 28.1
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 5.7e-16 90.1 238 28.2
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 5.7e-16 90.1 302 28.1
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 7.4e-16 89.7 302 26.8
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 9.6e-16 89.4 299 27.4
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.6e-16 89.4 299 26.8
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 9.6e-16 89.4 300 28.0
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.6e-15 88.6 300 28.7
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 2.1e-15 88.2 310 29.4
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.1e-15 88.2 315 27.3
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.1e-15 88.2 312 26.3
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 2.1e-15 88.2 345 27.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.8e-15 87.8 369 25.5
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.8e-15 87.8 322 26.1
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.8e-15 87.8 299 27.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.7e-15 87.4 294 27.6
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 3.7e-15 87.4 315 26.3
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 3.7e-15 87.4 307 27.7
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 3.7e-15 87.4 326 26.7
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 3.7e-15 87.4 300 28.7
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 3.7e-15 87.4 288 26.4
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 6.2e-15 86.7 316 27.2
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 6.2e-15 86.7 286 26.6
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 8.2e-15 86.3 299 26.4
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 8.2e-15 86.3 316 27.2
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.1e-14 85.9 331 26.0
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.1e-14 85.9 299 25.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.4e-14 85.5 315 26.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.4e-14 85.5 308 26.0
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 1.4e-14 85.5 305 27.5
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.4e-14 85.5 315 25.7
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.4e-14 85.5 321 26.5
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.8e-14 85.1 299 27.1
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 1.8e-14 85.1 300 27.0
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.8e-14 85.1 308 26.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.1e-14 84.3 315 26.7
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.1e-14 84.3 296 26.0
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 4.0e-14 84.0 273 26.0
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 4.0e-14 84.0 297 25.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 5.3e-14 83.6 312 26.9
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 5.3e-14 83.6 296 26.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 6.9e-14 83.2 310 26.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 6.9e-14 83.2 296 25.7
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.9e-14 83.2 296 25.3
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 9.0e-14 82.8 310 26.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 9.0e-14 82.8 316 26.6
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 9.0e-14 82.8 301 26.2
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.2e-13 82.4 298 26.2
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.2e-13 82.4 302 27.2
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-13 82.4 245 26.9
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-13 82.4 291 26.8
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.5e-13 82.0 299 25.4
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.5e-13 82.0 288 26.7
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.5e-13 82.0 310 27.1
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 2.0e-13 81.6 305 27.2
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.0e-13 81.6 322 26.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 2.6e-13 81.3 299 25.1
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 2.6e-13 81.3 298 25.8
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 2.6e-13 81.3 300 26.3
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.6e-13 81.3 300 26.0
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.6e-13 81.3 297 26.6
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 3.4e-13 80.9 300 26.3
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.4e-13 80.9 273 27.1
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 3.4e-13 80.9 313 26.5
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.4e-13 80.9 300 26.3
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.4e-13 80.9 309 25.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.5e-13 80.5 312 25.6
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.5e-13 80.5 312 26.0
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 4.5e-13 80.5 308 26.0
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 4.5e-13 80.5 175 30.9
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 5.8e-13 80.1 300 28.0
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.8e-13 80.1 312 26.0
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 5.8e-13 80.1 312 26.0
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 5.8e-13 80.1 297 24.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 5.8e-13 80.1 294 26.2
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 7.6e-13 79.7 232 27.6
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 7.6e-13 79.7 297 26.3
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-12 79.3 301 26.2
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.0e-12 79.3 297 25.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-12 79.0 301 26.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.3e-12 79.0 301 26.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.7e-12 78.6 234 26.1
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.7e-12 78.6 300 25.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 2.2e-12 78.2 160 31.2
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 2.9e-12 77.8 301 25.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.9e-12 77.8 299 26.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.9e-12 77.8 298 26.5
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.8e-12 77.4 306 26.8
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 3.8e-12 77.4 301 25.9
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 3.8e-12 77.4 309 27.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 5.0e-12 77.0 301 25.9
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 5.0e-12 77.0 273 25.3
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 6.5e-12 76.6 243 26.3
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 6.5e-12 76.6 273 25.3
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 8.4e-12 76.3 243 27.2
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.1e-11 75.9 318 25.2
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.1e-11 75.9 297 24.6
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.1e-11 75.9 298 25.2
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 1.4e-11 75.5 300 27.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-11 75.1 300 25.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.5e-11 74.7 297 25.9
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.2e-11 74.3 242 25.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.2e-11 74.3 301 25.6
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 4.2e-11 73.9 279 26.2
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 7.1e-11 73.2 234 25.6
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 9.3e-11 72.8 296 25.0
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.6e-10 72.0 234 26.9
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 4.6e-10 70.5 300 24.0
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 4.6e-10 70.5 300 25.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 6.1e-10 70.1 273 26.4
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.3e-09 68.9 300 24.3
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.3e-09 68.9 311 26.7
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 6.7e-09 66.6 315 24.4
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 8.7e-09 66.2 180 29.4
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 8.7e-09 66.2 215 29.3
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 7.4e-08 63.2 323 25.4
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.1e-06 59.3 169 28.4
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 1.4e-06 58.9 300 22.3
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 1.8e-06 58.5 244 24.2
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 3.1e-06 57.8 236 25.4
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 5.3e-06 57.0 231 26.0
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 6.9e-06 56.6 89 36.0
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 9.0e-06 56.2 307 24.8


User provided reference genes

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