Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa022308 Carpinus fangiana HOM05D003508 ORTHO05D004579 0.0e+00 1096.6 555 100.0
CBR_g26358 Chara braunii HOM05D003508 ORTHO05D004579 1.5e-77 294.7 304 53.0
SMO203G0120 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 7.6e-77 292.4 303 52.8
HanXRQChr11g0342191 Helianthus annuus HOM05D003508 ORTHO05D004579 9.9e-77 292.0 304 52.0
Gorai.013G012400 Gossypium raimondii HOM05D003508 ORTHO05D004579 1.3e-76 291.6 304 52.6
Cpa.g.sc183.13 Carica papaya HOM05D003508 ORTHO05D004579 4.9e-76 289.7 304 52.0
Gohir.A13G010700 Gossypium hirsutum HOM05D003508 ORTHO05D004579 4.9e-76 289.7 304 52.3
Aqoxy4G02791 Aquilegia oxysepala HOM05D003508 ORTHO05D004579 1.1e-75 288.5 304 51.0
AUR62027288 Chenopodium quinoa HOM05D003508 ORTHO05D004579 1.4e-75 288.1 304 52.6
PSO339G4868 Papaver somniferum HOM05D003508 ORTHO05D004579 1.4e-75 288.1 374 44.4
A09p47250 Brassica napus HOM05D003508 ORTHO05D004579 1.9e-75 287.7 304 52.0
BolC8t50554H Brassica oleracea HOM05D003508 ORTHO05D004579 1.9e-75 287.7 304 52.0
Prupe.2G078900 Prunus persica HOM05D003508 ORTHO05D004579 1.9e-75 287.7 304 52.3
Migut.F00911 Erythranthe guttata HOM05D003508 ORTHO05D004579 2.4e-75 287.3 392 44.1
C08p29490 Brassica napus HOM05D003508 ORTHO05D004579 4.2e-75 286.6 304 51.6
CARHR164170 Cardamine hirsuta HOM05D003508 ORTHO05D004579 4.2e-75 286.6 304 51.6
ECA238G0717 Erigeron canadensis HOM05D003508 ORTHO05D004579 4.2e-75 286.6 366 45.6
QL04p046077 Quercus lobata HOM05D003508 ORTHO05D004579 4.2e-75 286.6 304 51.6
BraA09t40187Z Brassica rapa HOM05D003508 ORTHO05D004579 5.4e-75 286.2 304 51.6
Hund11567 Selenicereus undatus HOM05D003508 ORTHO05D004579 5.4e-75 286.2 304 52.0
Aa31sc26G40 Aethionema arabicum HOM05D003508 ORTHO05D004579 7.1e-75 285.8 304 51.6
AL4G36000 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 7.1e-75 285.8 304 51.6
AT3G54250 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 7.1e-75 285.8 304 51.6
CiPaw.13G040400 Carya illinoinensis HOM05D003508 ORTHO05D004579 7.1e-75 285.8 304 51.6
Potri.008G021100 Populus trichocarpa HOM05D003508 ORTHO05D004579 7.1e-75 285.8 304 52.0
AL5G35290 Arabidopsis lyrata HOM05D003508 ORTHO05D004579 9.2e-75 285.4 304 51.3
AT2G38700 Arabidopsis thaliana HOM05D003508 ORTHO05D004579 9.2e-75 285.4 304 51.3
Aa31sc79G100 Aethionema arabicum HOM05D003508 ORTHO05D004579 1.2e-74 285.0 379 45.1
BcaB02g08480 Brassica carinata HOM05D003508 ORTHO05D004579 1.2e-74 285.0 304 51.6
CSS0049709 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.2e-74 285.0 304 52.3
Thhalv10016888m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 1.2e-74 285.0 304 51.6
Pp3c6_12700 Physcomitrium patens HOM05D003508 ORTHO05D004579 1.2e-74 285.0 305 51.5
TWI38G0289 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 1.2e-74 285.0 304 52.0
Actinidia06698 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.6e-74 284.6 369 45.8
BolC4t25395H Brassica oleracea HOM05D003508 ORTHO05D004579 1.6e-74 284.6 304 51.6
PSO384G2067 Papaver somniferum HOM05D003508 ORTHO05D004579 1.6e-74 284.6 374 44.1
AUR62007446 Chenopodium quinoa HOM05D003508 ORTHO05D004579 2.1e-74 284.3 304 52.0
Manes.07G087500 Manihot esculenta HOM05D003508 ORTHO05D004579 2.1e-74 284.3 304 52.3
Pp3c5_15100 Physcomitrium patens HOM05D003508 ORTHO05D004579 2.1e-74 284.3 305 51.5
Sabra08G0014400 Salix brachista HOM05D003508 ORTHO05D004579 2.1e-74 284.3 307 50.5
Sp4g21060 Schrenkiella parvula HOM05D003508 ORTHO05D004579 2.1e-74 284.3 304 51.0
THA.LOC104811335 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 2.1e-74 284.3 304 51.3
Ciclev10015368m.g Citrus clementina HOM05D003508 ORTHO05D004579 2.7e-74 283.9 304 51.3
Hund14639 Selenicereus undatus HOM05D003508 ORTHO05D004579 2.7e-74 283.9 304 51.3
Hma1.2p1_0356F.1_g134090 Hydrangea macrophylla HOM05D003508 ORTHO05D004579 3.5e-74 283.5 304 50.7
Lalb_Chr06g0166461 Lupinus albus HOM05D003508 ORTHO05D004579 3.5e-74 283.5 383 44.4
CANSAT56G3087 Cannabis sativa HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 50.7
Carub.0004s2070 Capsella rubella HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.0
Cfa010322 Carpinus fangiana HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.0
Dinv09607 Davidia involucrata HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.6
Thhalv10023484m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.0
Lsat_1_v5_gn_0_7601 Lactuca sativa HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.3
Medtr1g112230 Medicago truncatula HOM05D003508 ORTHO05D004579 4.6e-74 283.1 304 51.6
THA.LOC104824218 Tarenaya hassleriana HOM05D003508 ORTHO05D004579 6.0e-74 282.7 304 50.3
MSTRG.27535 Avicennia marina HOM05D003508 ORTHO05D004579 7.8e-74 282.3 304 51.3
CARHR133390 Cardamine hirsuta HOM05D003508 ORTHO05D004579 7.8e-74 282.3 379 44.9
MELO3C012357.2 Cucumis melo HOM05D003508 ORTHO05D004579 7.8e-74 282.3 304 51.0
Thhalv10010411m.g Eutrema salsugineum HOM05D003508 ORTHO05D004579 7.8e-74 282.3 304 51.0
TAR633G0880 Trochodendron aralioides HOM05D003508 ORTHO05D004579 7.8e-74 282.3 304 51.3
BcaC02g09078 Brassica carinata HOM05D003508 ORTHO05D004579 1.0e-73 282.0 304 51.3
C04p38200 Brassica napus HOM05D003508 ORTHO05D004579 1.0e-73 282.0 304 51.3
Duzib106G0726 Durio zibethinus HOM05D003508 ORTHO05D004579 1.0e-73 282.0 304 51.3
Manes.10G058800 Manihot esculenta HOM05D003508 ORTHO05D004579 1.0e-73 282.0 304 51.3
Solyc11g007020.2 Solanum lycopersicum HOM05D003508 ORTHO05D004579 1.0e-73 282.0 304 52.0
A04p05510 Brassica napus HOM05D003508 ORTHO05D004579 1.3e-73 281.6 304 51.3
BraA04t16251Z Brassica rapa HOM05D003508 ORTHO05D004579 1.3e-73 281.6 304 51.3
Sed0023449 Sechium edule HOM05D003508 ORTHO05D004579 1.3e-73 281.6 304 51.0
Sopen11g002940 Solanum pennellii HOM05D003508 ORTHO05D004579 1.3e-73 281.6 304 52.0
CSS0009164 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 1.7e-73 281.2 304 51.6
Carub.0005s2084 Capsella rubella HOM05D003508 ORTHO05D004579 2.3e-73 280.8 384 44.3
Lalb_Chr02g0146341 Lupinus albus HOM05D003508 ORTHO05D004579 3.0e-73 280.4 304 51.0
MD02G1256300 Malus domestica HOM05D003508 ORTHO05D004579 3.0e-73 280.4 304 51.0
VMungo0720G2493 Vigna mungo HOM05D003508 ORTHO05D004579 3.0e-73 280.4 304 51.3
SalBow6G1879 Salvia bowleyana HOM05D003508 ORTHO05D004579 3.9e-73 280.0 395 44.3
Phvul.007G021200 Phaseolus vulgaris HOM05D003508 ORTHO05D004579 5.1e-73 279.6 304 51.0
Potri.010G237900 Populus trichocarpa HOM05D003508 ORTHO05D004579 5.1e-73 279.6 304 51.3
Sp5g08150 Schrenkiella parvula HOM05D003508 ORTHO05D004579 5.1e-73 279.6 304 51.0
TWI63G0607 Tripterygium wilfordii HOM05D003508 ORTHO05D004579 5.1e-73 279.6 390 44.4
arahy.Tifrunner.gnm1.ann1.Y4RU6H Arachis hypogaea HOM05D003508 ORTHO05D004579 6.6e-73 279.3 314 50.0
Lalb_Chr21g0309221 Lupinus albus HOM05D003508 ORTHO05D004579 6.6e-73 279.3 304 50.3
PGSC0003DMG400023978 Solanum tuberosum HOM05D003508 ORTHO05D004579 6.6e-73 279.3 304 51.3
GSVIVG01011287001 Vitis vinifera HOM05D003508 ORTHO05D004579 6.6e-73 279.3 384 43.5
MD07G1064100 Malus domestica HOM05D003508 ORTHO05D004579 8.7e-73 278.9 304 51.0
Thecc.10G106000 Theobroma cacao HOM05D003508 ORTHO05D004579 8.7e-73 278.9 304 50.7
Glyma.20G109900 Glycine max HOM05D003508 ORTHO05D004579 1.1e-72 278.5 304 50.7
RcHm_v2.0_Chr1g0332421 Rosa chinensis HOM05D003508 ORTHO05D004579 1.9e-72 277.7 304 50.0
unitig_736.g22527 Utricularia gibba HOM05D003508 ORTHO05D004579 1.9e-72 277.7 304 50.3
AagrBONN_evm.TU.Sc2ySwM_117.3316 Anthoceros agrestis HOM05D003508 ORTHO05D004579 4.3e-72 276.6 305 50.8
HPP92_006808 Vanilla planifolia HOM05D003508 ORTHO05D004579 4.3e-72 276.6 384 43.8
EL10Ac5g12977 Beta vulgaris HOM05D003508 ORTHO05D004579 5.6e-72 276.2 304 50.0
PGR044G1695 Punica granatum HOM05D003508 ORTHO05D004579 5.6e-72 276.2 304 50.3
Cc02_g09750 Coffea canephora HOM05D003508 ORTHO05D004579 7.3e-72 275.8 308 50.0
Lj5g0024073 Lotus japonicus HOM05D003508 ORTHO05D004579 7.3e-72 275.8 304 49.7
SGA_v2.0_scaffold62G21342 Striga asiatica HOM05D003508 ORTHO05D004579 1.2e-71 275.0 315 49.5
Nitab4.5_0001437g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 2.8e-71 273.9 304 49.3
Actinidia34720 Actinidia chinensis HOM05D003508 ORTHO05D004579 3.6e-71 273.5 366 44.8
Eucgr.J00991 Eucalyptus grandis HOM05D003508 ORTHO05D004579 3.6e-71 273.5 304 50.0
Os02g0109100 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 3.6e-71 273.5 306 49.3
Sopen04g004800 Solanum pennellii HOM05D003508 ORTHO05D004579 3.6e-71 273.5 304 49.3
Zm00001eb056620 Zea mays HOM05D003508 ORTHO05D004579 3.6e-71 273.5 304 49.7
Glyma.10G279800 Glycine max HOM05D003508 ORTHO05D004579 6.2e-71 272.7 304 50.0
Zm00001eb257840 Zea mays HOM05D003508 ORTHO05D004579 6.2e-71 272.7 304 49.7
CAN.G645.2 Capsicum annuum HOM05D003508 ORTHO05D004579 1.1e-70 271.9 315 48.9
Nitab4.5_0000691g0130 Nicotiana tabacum HOM05D003508 ORTHO05D004579 1.1e-70 271.9 346 46.0
ATR0081G016 Amborella trichopoda HOM05D003508 ORTHO05D004579 4.0e-70 270.0 304 48.7
CSS0018426 Camellia sinensis var. sinensis HOM05D003508 ORTHO05D004579 4.0e-70 270.0 305 50.2
Nitab4.5_0005622g0070 Nicotiana tabacum HOM05D003508 ORTHO05D004579 4.0e-70 270.0 375 43.2
FAN01G1243 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.2e-69 268.5 317 48.3
FAN06G4590 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.2e-69 268.5 317 48.3
FAN10G3478 Fragaria x ananassa HOM05D003508 ORTHO05D004579 1.2e-69 268.5 317 48.3
Haze_03293 Corylus avellana HOM05D003508 ORTHO05D004579 2.6e-69 267.3 331 47.7
Rhsim09G0142500 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.7e-68 264.6 304 50.0
Lj3A928T54 Lonicera japonica HOM05D003508 ORTHO05D004579 2.2e-68 264.2 304 48.0
Peaxi162Scf00519g00710 Petunia axillaris HOM05D003508 ORTHO05D004579 2.9e-68 263.8 316 47.8
Nn6g34927 Nelumbo nucifera HOM05D003508 ORTHO05D004579 4.9e-68 263.1 304 48.7
vmacro10305 Vaccinium macrocarpon HOM05D003508 ORTHO05D004579 6.4e-68 262.7 304 49.7
ClCG05G021710 Citrullus lanatus HOM05D003508 ORTHO05D004579 8.4e-68 262.3 304 49.0
CiPaw.14G033200 Carya illinoinensis HOM05D003508 ORTHO05D004579 1.1e-67 261.9 280 51.8
FvH4_7g05610 Fragaria vesca HOM05D003508 ORTHO05D004579 1.1e-67 261.9 336 45.5
arahy.Tifrunner.gnm1.ann1.Q6BHJ0 Arachis hypogaea HOM05D003508 ORTHO05D004579 4.2e-67 260.0 353 44.5
Nitab4.5_0003927g0020 Nicotiana tabacum HOM05D003508 ORTHO05D004579 7.1e-67 259.2 304 48.0
Sabra10G0186100 Salix brachista HOM05D003508 ORTHO05D004579 9.3e-67 258.8 275 50.2
Dinv11847 Davidia involucrata HOM05D003508 ORTHO05D004579 6.0e-66 256.1 280 50.4
Atru.chr12.1012 Acer truncatum HOM05D003508 ORTHO05D004579 7.8e-66 255.8 289 50.5
Peaxi162Scf00173g00046 Petunia axillaris HOM05D003508 ORTHO05D004579 1.5e-64 251.5 304 47.0
FAN03G1980 Fragaria x ananassa HOM05D003508 ORTHO05D004579 3.3e-64 250.4 337 45.4
Eucgr.G02693 Eucalyptus grandis HOM05D003508 ORTHO05D004579 7.3e-64 249.2 385 40.0
Lsat_1_v5_gn_2_104600 Lactuca sativa HOM05D003508 ORTHO05D004579 1.8e-62 244.6 384 41.7
COL.COLO4_24552 Corchorus olitorius HOM05D003508 ORTHO05D004579 2.4e-62 244.2 304 47.0
Actinidia36696 Actinidia chinensis HOM05D003508 ORTHO05D004579 9.0e-62 242.3 259 51.4
PGSC0003DMG400016014 Solanum tuberosum HOM05D003508 ORTHO05D004579 9.0e-62 242.3 309 46.9
Mapoly0007s0128 Marchantia polymorpha HOM05D003508 ORTHO05D004579 3.8e-60 236.9 253 51.0
TPR.G2474 Trifolium pratense HOM05D003508 ORTHO05D004579 3.8e-60 236.9 300 45.7
Rhsim03G0099000 Rhododendron simsii HOM05D003508 ORTHO05D004579 1.1e-59 235.3 387 39.8
Ah.02g117270 Amaranthus hybridus HOM05D003508 ORTHO05D004579 1.6e-58 231.5 304 45.1
Sc06g0002320 Simmondsia chinensis HOM05D003508 ORTHO05D004579 1.3e-57 228.4 215 55.8
SGA_v2.0_scaffold7G04100 Striga asiatica HOM05D003508 ORTHO05D004579 1.8e-57 228.0 394 39.8
Haze_01394 Corylus avellana HOM05D003508 ORTHO05D004579 8.7e-57 225.7 274 47.8
Haze_26564 Corylus avellana HOM05D003508 ORTHO05D004579 4.8e-55 219.9 293 44.7
SHI21271 Sapria himalayana HOM05D003508 ORTHO05D004579 6.2e-55 219.5 304 44.1
CsaV3_5G035560 Cucumis sativus L. HOM05D003508 ORTHO05D004579 2.6e-53 214.2 304 44.4
Psat6g231280 Pisum sativum HOM05D003508 ORTHO05D004579 5.8e-53 213.0 305 43.9
Gohir.D13G011400 Gossypium hirsutum HOM05D003508 ORTHO05D004579 9.6e-48 195.7 178 55.6
Ca_25671_v3 Cicer arietinum L. HOM05D003508 ORTHO05D004579 2.1e-47 194.5 304 40.8
DCAR_006338 Daucus carota HOM05D003508 ORTHO05D004579 1.2e-45 188.7 180 53.9
BcaNung06364 Brassica carinata HOM05D003508 ORTHO05D004579 1.0e-44 185.7 216 50.0
Oeu026584.1 Olea europaea HOM05D003508 ORTHO05D004579 1.0e-44 185.7 185 53.0
MBI16_g39317_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 1.6e-42 178.3 184 51.1
MBI17_g42676_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 6.0e-42 176.4 248 42.7
Actinidia18595 Actinidia chinensis HOM05D003508 ORTHO05D004579 1.9e-40 171.4 292 39.7
QL04p041546 Quercus lobata HOM05D003508 ORTHO05D004579 7.9e-34 149.4 195 46.7
PGSC0003DMG400011919 Solanum tuberosum HOM05D003508 ORTHO05D004579 7.9e-34 149.4 179 47.5
Os02g0107200 Oryza sativa ssp. japonica HOM05D003508 ORTHO05D004579 2.6e-29 134.4 158 48.1
CDE04G3073 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 8.5e-28 129.4 150 52.0
Rhsim03G0099400 Rhododendron simsii HOM05D003508 ORTHO05D004579 9.4e-27 125.9 169 46.2
Oeu025589.3 Olea europaea HOM05D003508 ORTHO05D004579 7.9e-26 122.9 119 52.9
CDE04G2729 Ceratophyllum demersum HOM05D003508 ORTHO05D004579 5.9e-21 106.7 106 50.0
SEGI_06330 Sequoiadendron giganteum HOM05D003508 ORTHO05D004579 4.2e-19 100.5 138 46.4
Lj2C31T21 Lonicera japonica HOM05D003508 ORTHO05D004579 1.1e-16 92.4 304 27.6
PGSC0003DMG400011923 Solanum tuberosum HOM05D003508 ORTHO05D004579 7.4e-16 89.7 116 45.7
SMO203G0126 Selaginella moellendorffii HOM05D009355 ORTHO05D011581 9.7e-16 89.4 83 54.2
MBI16_g04457_MAGBIO Magnolia biondii HOM05D003508 ORTHO05D004579 3.8e-12 77.4 113 45.1
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 5.0e-12 77.0 59 59.3
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.1e-11 75.9 63 55.6
Gorai.003G053700 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.1e-11 75.9 59 57.6
Gorai.008G061300 Gossypium raimondii HOM05D003508 ORTHO05D017053 1.5e-11 75.5 82 46.3
SMO197G0052 Selaginella moellendorffii HOM05D003508 ORTHO05D004579 1.5e-11 75.5 112 42.9
Gohir.D07G221800 Gossypium hirsutum HOM05D003508 ORTHO05D017053 5.5e-11 73.6 59 55.9
Gorai.001G156500 Gossypium raimondii HOM05D003508 ORTHO05D017053 5.5e-11 73.6 59 55.9
CsaV3_7G016180 Cucumis sativus L. HOM05D003508 ORTHO05D004579 1.2e-10 72.4 160 35.0
Gohir.D10G141300 Gossypium hirsutum HOM05D003508 ORTHO05D017053 1.2e-10 72.4 70 51.4
Gohir.D11G205701 Gossypium hirsutum HOM05D003508 ORTHO05D017053 2.1e-10 71.6 59 55.9
Nitab4.5_0000561g0090 Nicotiana tabacum HOM05D003508 ORTHO05D017053 1.0e-09 69.3 90 42.2
Nn5g30614 Nelumbo nucifera HOM05D003508 ORTHO05D004579 6.3e-07 60.1 81 40.7


User provided reference genes

Program Settings