Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021986 Carpinus fangiana HOM05D001458 ORTHO05D008462 4.9e-42 174.1 91 100.0
Cfa012245 Carpinus fangiana HOM05D001458 ORTHO05D008462 1.3e-31 139.4 79 96.2
QL12p031785 Quercus lobata HOM05D001458 ORTHO05D008462 5.5e-25 117.5 79 81.0
Manes.10G032400 Manihot esculenta HOM05D001458 ORTHO05D008462 1.3e-23 112.8 79 75.9
CiPaw.11G104800 Carya illinoinensis HOM05D001458 ORTHO05D008462 1.1e-22 109.8 79 77.2
vmacro11411 Vaccinium macrocarpon HOM05D001458 ORTHO05D008462 1.9e-22 109.0 79 75.9
CSS0026629 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D008462 3.3e-22 108.2 79 74.7
Thecc.03G286600 Theobroma cacao HOM05D001458 ORTHO05D008462 5.7e-22 107.5 79 69.6
Ciclev10024616m.g Citrus clementina HOM05D001458 ORTHO05D008462 7.4e-22 107.1 79 73.4
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 7.4e-22 107.1 79 70.9
Gorai.004G137600 Gossypium raimondii HOM05D001458 ORTHO05D008462 7.4e-22 107.1 79 70.9
Rhsim02G0235800 Rhododendron simsii HOM05D001458 ORTHO05D008462 7.4e-22 107.1 79 74.7
Hma1.2p1_0216F.1_g091080 Hydrangea macrophylla HOM05D001458 ORTHO05D008462 1.3e-21 106.3 80 76.2
Medtr5g009990 Medicago truncatula HOM05D001458 ORTHO05D008462 2.2e-21 105.5 79 69.6
Atru.chr9.2114 Acer truncatum HOM05D001458 ORTHO05D008462 3.7e-21 104.8 79 72.2
Duzib205G2063 Durio zibethinus HOM05D001458 ORTHO05D008462 3.7e-21 104.8 79 69.6
Prupe.5G106600 Prunus persica HOM05D001458 ORTHO05D008462 3.7e-21 104.8 79 70.9
Dinv37596 Davidia involucrata HOM05D001458 ORTHO05D008462 8.2e-21 103.6 79 74.7
RcHm_v2.0_Chr7g0196581 Rosa chinensis HOM05D001458 ORTHO05D008462 1.1e-20 103.2 79 68.4
Cc08_g15260 Coffea canephora HOM05D001458 ORTHO05D008462 1.4e-20 102.8 79 74.7
THA.LOC104823599 Tarenaya hassleriana HOM05D001458 ORTHO05D008462 1.4e-20 102.8 83 71.1
CsaV3_5G002400 Cucumis sativus L. HOM05D001458 ORTHO05D008462 1.8e-20 102.4 76 75.0
TWI60G1516 Tripterygium wilfordii HOM05D001458 ORTHO05D008462 1.8e-20 102.4 78 69.2
MELO3C005714.2 Cucumis melo HOM05D001458 ORTHO05D008462 2.4e-20 102.1 76 73.7
MD14G1112000 Malus domestica HOM05D001458 ORTHO05D008462 2.4e-20 102.1 82 68.3
PGR042G0367 Punica granatum HOM05D001458 ORTHO05D008462 2.4e-20 102.1 79 70.9
Gohir.A08G114200 Gossypium hirsutum HOM05D001458 ORTHO05D008462 3.1e-20 101.7 79 68.4
FvH4_5g03200 Fragaria vesca HOM05D001458 ORTHO05D008462 4.1e-20 101.3 79 64.6
FAN18G0903 Fragaria x ananassa HOM05D001458 ORTHO05D008462 4.1e-20 101.3 79 64.6
Cpa.g.sc2704.1 Carica papaya HOM05D001458 ORTHO05D008462 6.9e-20 100.5 78 71.8
FAN04G2019 Fragaria x ananassa HOM05D001458 ORTHO05D008462 6.9e-20 100.5 79 64.6
Psat2g183760 Pisum sativum HOM05D001458 ORTHO05D008462 1.2e-19 99.8 79 64.6
FAN08G0489 Fragaria x ananassa HOM05D001458 ORTHO05D008462 1.5e-19 99.4 79 63.3
ClCG01G002330 Citrullus lanatus HOM05D001458 ORTHO05D008462 2.0e-19 99.0 76 71.1
FAN13G1665 Fragaria x ananassa HOM05D001458 ORTHO05D008462 3.4e-19 98.2 79 63.3
CANSAT21G0931 Cannabis sativa HOM05D001458 ORTHO05D008462 4.5e-19 97.8 79 69.6
LjContig00312_ERROPOS870357g0025239 Lotus japonicus HOM05D001458 ORTHO05D008462 4.5e-19 97.8 79 64.6
Haze_08757 Corylus avellana HOM05D001458 ORTHO05D008462 5.9e-19 97.4 79 73.4
Glyma.11G021300 Glycine max HOM05D001458 ORTHO05D008462 1.7e-18 95.9 79 65.8
VMungo1215G0710 Vigna mungo HOM05D001458 ORTHO05D008462 1.7e-18 95.9 79 64.6
Solyc08g081590.3 Solanum lycopersicum HOM05D001458 ORTHO05D008462 2.2e-18 95.5 69 75.4
Eucgr.E00781 Eucalyptus grandis HOM05D001458 ORTHO05D008462 2.9e-18 95.1 79 67.1
TPR.G6687 Trifolium pratense HOM05D001458 ORTHO05D008462 3.8e-18 94.7 80 63.8
Phvul.002G160000 Phaseolus vulgaris HOM05D001458 ORTHO05D008462 6.5e-18 94.0 79 64.6
Lj8A216G70 Lonicera japonica HOM05D001458 ORTHO05D008462 8.5e-18 93.6 79 64.6
PSO266G0060 Papaver somniferum HOM05D001458 ORTHO05D008462 1.9e-17 92.4 80 67.5
TAR375G0317 Trochodendron aralioides HOM05D001458 ORTHO05D008462 1.9e-17 92.4 79 68.4
AL2G11120 Arabidopsis lyrata HOM05D001458 ORTHO05D008462 2.5e-17 92.0 73 69.9
Lalb_Chr16g0377031 Lupinus albus HOM05D001458 ORTHO05D008462 2.5e-17 92.0 79 60.8
Peaxi162Scf00074g01731 Petunia axillaris HOM05D001458 ORTHO05D008462 3.2e-17 91.7 69 71.0
PSO478G0962 Papaver somniferum HOM05D001458 ORTHO05D008462 5.5e-17 90.9 80 66.2
Hund15092 Selenicereus undatus HOM05D001458 ORTHO05D008462 7.2e-17 90.5 79 68.4
AT1G63990 Arabidopsis thaliana HOM05D001458 ORTHO05D008462 9.3e-17 90.1 73 68.5
A09p14070 Brassica napus HOM05D001458 ORTHO05D008462 9.3e-17 90.1 74 67.6
C09p16960 Brassica napus HOM05D001458 ORTHO05D008462 9.3e-17 90.1 74 67.6
BraA09t37054Z Brassica rapa HOM05D001458 ORTHO05D008462 9.3e-17 90.1 74 67.6
GSVIVG01019418001 Vitis vinifera HOM05D001458 ORTHO05D008462 9.3e-17 90.1 79 69.6
Nn1g01676 Nelumbo nucifera HOM05D001458 ORTHO05D008462 1.2e-16 89.7 79 67.1
ECA233G6039 Erigeron canadensis HOM05D001458 ORTHO05D008462 1.6e-16 89.4 74 66.2
Sopen08g029900 Solanum pennellii HOM05D001458 ORTHO05D008462 1.6e-16 89.4 69 72.5
arahy.Tifrunner.gnm1.ann1.8L89DK Arachis hypogaea HOM05D001458 ORTHO05D008462 2.1e-16 89.0 92 55.4
arahy.Tifrunner.gnm1.ann1.C5PCA3 Arachis hypogaea HOM05D007788 ORTHO05D008462 2.1e-16 89.0 92 55.4
Carub.0002s0085 Capsella rubella HOM05D001458 ORTHO05D008462 2.1e-16 89.0 73 68.5
BcaB07g31531 Brassica carinata HOM05D001458 ORTHO05D008462 3.6e-16 88.2 78 64.1
Thhalv10023831m.g Eutrema salsugineum HOM05D001458 ORTHO05D008462 3.6e-16 88.2 73 68.5
BolC9t54593H Brassica oleracea HOM05D001458 ORTHO05D008462 6.1e-16 87.4 74 66.2
BcaC04g22660 Brassica carinata HOM05D001458 ORTHO05D008462 7.9e-16 87.0 74 64.9
CARHR046990 Cardamine hirsuta HOM05D001458 ORTHO05D008462 1.0e-15 86.7 73 67.1
Sp2g00700 Schrenkiella parvula HOM05D001458 ORTHO05D008462 3.0e-15 85.1 73 65.8
Aa31LG2G1080 Aethionema arabicum HOM05D001458 ORTHO05D008462 1.1e-14 83.2 73 63.0
MBI04_g30489_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D008462 1.1e-14 83.2 72 63.9
Sc01g0009860 Simmondsia chinensis HOM05D001458 ORTHO05D008462 3.3e-14 81.6 79 57.0
SGA_v2.0_scaffold146G36265 Striga asiatica HOM05D001458 ORTHO05D008462 9.7e-14 80.1 79 60.8
Migut.A00719 Erythranthe guttata HOM05D001458 ORTHO05D008462 1.3e-13 79.7 79 59.5
Aqoxy4G03152 Aquilegia oxysepala HOM05D001458 ORTHO05D008462 2.8e-13 78.6 79 60.8
EL10Ac3g07100 Beta vulgaris HOM05D001458 ORTHO05D008462 3.7e-13 78.2 72 61.1
SGA_v2.0_scaffold329G48826 Striga asiatica HOM05D001458 ORTHO05D008462 3.7e-13 78.2 79 59.5
CAN.G532.40 Capsicum annuum HOM05D001458 ORTHO05D008462 1.5e-11 72.8 53 77.4
COL.COLO4_08361 Corchorus olitorius HOM05D001458 ORTHO05D008462 2.6e-11 72.0 72 56.9
Actinidia28344 Actinidia chinensis HOM05D001458 ORTHO05D008462 3.4e-11 71.6 53 75.5
Ah.09g237560 Amaranthus hybridus HOM05D001458 ORTHO05D008462 3.4e-11 71.6 78 57.7
Ca_24536_v3 Cicer arietinum L. HOM05D001458 ORTHO05D008462 3.4e-11 71.6 55 65.5
Zm00001eb172550 Zea mays HOM05D001458 ORTHO05D008462 6.5e-10 67.4 75 54.7
HanXRQChr02g0049711 Helianthus annuus HOM05D001458 ORTHO05D008462 1.2e-08 63.2 53 64.2
Nitab4.5_0003015g0120 Nicotiana tabacum HOM05D001458 ORTHO05D008462 2.1e-08 62.4 46 69.6
Os08g0156900 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D008462 2.1e-08 62.4 71 56.3


User provided reference genes

Program Settings