Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021604 Carpinus fangiana HOM05D001724 ORTHO05D002973 6.2e-277 956.8 483 100.0
SMO117G0265 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 1.9e-23 114.8 455 24.4
SMO266G0093 Selaginella moellendorffii HOM05D001724 ORTHO05D002973 3.9e-21 107.1 473 23.5
Nn3g20983 Nelumbo nucifera HOM05D001724 ORTHO05D002973 4.8e-19 100.1 371 24.8
Pp3c6_1870 Physcomitrium patens HOM05D001724 ORTHO05D002973 8.2e-19 99.4 512 22.1
Hund20648 Selenicereus undatus HOM05D001724 ORTHO05D002973 4.5e-17 93.6 377 21.8
TAR629G2285 Trochodendron aralioides HOM05D001724 ORTHO05D002973 4.5e-17 93.6 374 23.0
HanXRQChr11g0334101 Helianthus annuus HOM05D001724 ORTHO05D002973 7.7e-17 92.8 367 21.0
MSTRG.13022 Avicennia marina HOM05D001724 ORTHO05D002973 1.3e-16 92.0 358 22.6
FvH4_3g42970 Fragaria vesca HOM05D001724 ORTHO05D002973 1.3e-16 92.0 370 22.7
RcHm_v2.0_Chr5g0077021 Rosa chinensis HOM05D001724 ORTHO05D002973 5.0e-16 90.1 372 22.3
FAN25G1954 Fragaria x ananassa HOM05D001724 ORTHO05D002973 6.5e-16 89.7 370 22.7
ATR0751G261 Amborella trichopoda HOM05D001724 ORTHO05D002973 1.1e-15 89.0 384 21.4
QL08p003988 Quercus lobata HOM05D001724 ORTHO05D002973 1.4e-15 88.6 372 20.7
Cfa020185 Carpinus fangiana HOM05D001724 ORTHO05D007284 2.5e-15 87.8 366 19.9
Thhalv10011283m.g Eutrema salsugineum HOM05D001724 ORTHO05D002973 3.2e-15 87.4 366 20.8
arahy.Tifrunner.gnm1.ann1.I0JGGQ Arachis hypogaea HOM05D001724 ORTHO05D002973 4.2e-15 87.0 364 21.2
CDE10G0672 Ceratophyllum demersum HOM05D001724 ORTHO05D002973 5.5e-15 86.7 373 23.1
PRCOL_00003085 Prasinoderma coloniale HOM05D001724 ORTHO05D002973 7.2e-15 86.3 359 25.3
Migut.H01753 Erythranthe guttata HOM05D001724 ORTHO05D002973 9.4e-15 85.9 372 22.3
Sp1g41470 Schrenkiella parvula HOM05D001724 ORTHO05D002973 1.6e-14 85.1 365 19.2
Rhsim06G0230400 Rhododendron simsii HOM05D001724 ORTHO05D002973 2.1e-14 84.7 381 21.3
Atru.chr2.3696 Acer truncatum HOM05D001724 ORTHO05D002973 4.6e-14 83.6 384 22.7
Lsat_1_v5_gn_7_114340 Lactuca sativa HOM05D001724 ORTHO05D002973 4.6e-14 83.6 358 22.9
Lj6g0025052 Lotus japonicus HOM05D001724 ORTHO05D002973 6.1e-14 83.2 370 21.4
EL10Ac4g07558 Beta vulgaris HOM05D001724 ORTHO05D002973 7.9e-14 82.8 364 22.3
COL.COLO4_09841 Corchorus olitorius HOM05D001724 ORTHO05D002973 7.9e-14 82.8 469 22.0
Gohir.A01G091900 Gossypium hirsutum HOM05D001724 ORTHO05D002973 7.9e-14 82.8 381 21.8
Ciclev10007611m.g Citrus clementina HOM05D001724 ORTHO05D002973 1.0e-13 82.4 478 20.3
VMungo0540G2248 Vigna mungo HOM05D001724 ORTHO05D002973 1.4e-13 82.0 393 21.6
GSVIVG01014694001 Vitis vinifera HOM05D001724 ORTHO05D002973 1.4e-13 82.0 384 20.1
arahy.Tifrunner.gnm1.ann1.IH99E4 Arachis hypogaea HOM05D001724 ORTHO05D002973 1.8e-13 81.6 363 20.9
Gorai.002G100700 Gossypium raimondii HOM05D001724 ORTHO05D002973 1.8e-13 81.6 382 22.3
PGR083G1098 Punica granatum HOM05D001724 ORTHO05D002973 1.8e-13 81.6 373 21.7
QL08p003981 Quercus lobata HOM05D001724 ORTHO05D002973 1.8e-13 81.6 367 19.9
Sed0006389 Sechium edule HOM05D001724 ORTHO05D002973 3.0e-13 80.9 382 20.9
Thecc.07G012700 Theobroma cacao HOM05D001724 ORTHO05D002973 3.9e-13 80.5 360 21.9
Gohir.D01G062100 Gossypium hirsutum HOM05D001724 ORTHO05D002973 5.1e-13 80.1 382 22.3
Potri.001G368401 Populus trichocarpa HOM05D001724 ORTHO05D002973 5.1e-13 80.1 353 20.7
Sabra16G0241500 Salix brachista HOM05D001724 ORTHO05D002973 5.1e-13 80.1 366 21.0
BolC6t36163H Brassica oleracea HOM05D001724 ORTHO05D002973 6.7e-13 79.7 391 21.5
Manes.03G141900 Manihot esculenta HOM05D001724 ORTHO05D002973 6.7e-13 79.7 363 21.5
THA.LOC104822731 Tarenaya hassleriana HOM05D001724 ORTHO05D002973 6.7e-13 79.7 364 21.4
TPR.G24133 Trifolium pratense HOM05D001724 ORTHO05D002973 6.7e-13 79.7 366 19.9
Aqoxy1G04266 Aquilegia oxysepala HOM05D001724 ORTHO05D002973 1.1e-12 79.0 359 21.4
Actinidia04999 Actinidia chinensis HOM05D001724 ORTHO05D002973 2.0e-12 78.2 381 20.7
BcaB02g10794 Brassica carinata HOM05D001724 ORTHO05D002973 2.0e-12 78.2 347 22.5
C06p10790 Brassica napus HOM05D001724 ORTHO05D002973 2.0e-12 78.2 391 21.5
BcaC08g43659 Brassica carinata HOM05D001724 ORTHO05D002973 2.5e-12 77.8 391 21.5
CANSAT11G0804 Cannabis sativa HOM05D001724 ORTHO05D002973 2.5e-12 77.8 358 19.6
ClCG10G004430 Citrullus lanatus HOM05D001724 ORTHO05D002973 2.5e-12 77.8 356 21.3
BraSC56t46398Z Brassica rapa HOM05D001724 ORTHO05D002973 3.3e-12 77.4 397 19.4
Ca_26568_v3 Cicer arietinum L. HOM05D001724 ORTHO05D002973 3.3e-12 77.4 366 19.4
CsaV3_3G004220 Cucumis sativus L. HOM05D001724 ORTHO05D002973 3.3e-12 77.4 365 23.3
Dinv10340 Davidia involucrata HOM05D001724 ORTHO05D002973 4.3e-12 77.0 360 20.0
TWI39G0509 Tripterygium wilfordii HOM05D001724 ORTHO05D002973 4.3e-12 77.0 390 19.5
HPP92_018203 Vanilla planifolia HOM05D001724 ORTHO05D002973 4.3e-12 77.0 472 20.8
BcaNung06014 Brassica carinata HOM05D001724 ORTHO05D002973 5.7e-12 76.6 409 20.3
Carub.0001s4445 Capsella rubella HOM05D001724 ORTHO05D002973 5.7e-12 76.6 351 21.7
Eucgr.F02044 Eucalyptus grandis HOM05D001724 ORTHO05D002973 5.7e-12 76.6 409 20.8
MD11G1030900 Malus domestica HOM05D001724 ORTHO05D002973 5.7e-12 76.6 376 21.3
PSO210G1056 Papaver somniferum HOM05D001724 ORTHO05D002973 5.7e-12 76.6 362 20.7
Cc05_g14990 Coffea canephora HOM05D001724 ORTHO05D002973 7.4e-12 76.3 365 19.7
Aa31LG10G320 Aethionema arabicum HOM05D001724 ORTHO05D002973 9.7e-12 75.9 376 21.5
AT1G55870 Arabidopsis thaliana HOM05D001724 ORTHO05D002973 9.7e-12 75.9 373 21.7
DCAR_017078 Daucus carota HOM05D001724 ORTHO05D002973 1.7e-11 75.1 361 21.9
Lalb_Chr15g0082171 Lupinus albus HOM05D001724 ORTHO05D002973 1.7e-11 75.1 364 20.3
Nitab4.5_0002736g0010 Nicotiana tabacum HOM05D001724 ORTHO05D002973 1.7e-11 75.1 383 19.1
FAN21G0081 Fragaria x ananassa HOM05D001724 ORTHO05D002973 2.8e-11 74.3 405 21.5
CARHR045570 Cardamine hirsuta HOM05D001724 ORTHO05D002973 6.3e-11 73.2 352 19.0
Prupe.6G024200 Prunus persica HOM05D001724 ORTHO05D002973 8.2e-11 72.8 383 21.9
Sopen07g033830 Solanum pennellii HOM05D001724 ORTHO05D002973 8.2e-11 72.8 383 19.3
AL1G64000 Arabidopsis lyrata HOM05D001724 ORTHO05D002973 1.4e-10 72.0 353 21.8
CAN.G623.15 Capsicum annuum HOM05D001724 ORTHO05D002973 1.4e-10 72.0 360 19.2
Peaxi162Scf00139g01315 Petunia axillaris HOM05D001724 ORTHO05D002973 1.4e-10 72.0 373 19.6
Nitab4.5_0007415g0040 Nicotiana tabacum HOM05D001724 ORTHO05D002973 3.1e-10 70.9 383 18.5
Solyc07g065620.4 Solanum lycopersicum HOM05D001724 ORTHO05D002973 4.1e-10 70.5 366 18.3
MELO3C014116.2 Cucumis melo HOM05D001724 ORTHO05D002973 5.3e-10 70.1 362 21.5
PGSC0003DMG400022169 Solanum tuberosum HOM05D001724 ORTHO05D002973 5.3e-10 70.1 360 17.8
Phvul.006G058000 Phaseolus vulgaris HOM05D001724 ORTHO05D002973 2.0e-09 68.2 428 21.0
SGA_v2.0_scaffold8G04414 Striga asiatica HOM05D001724 ORTHO05D002973 2.0e-09 68.2 416 18.5
ECA236G0853 Erigeron canadensis HOM05D001724 ORTHO05D002973 2.2e-08 64.7 315 22.9
vmacro11595 Vaccinium macrocarpon HOM05D001724 ORTHO05D002973 2.9e-08 64.3 406 19.0
CBR_g84870 Chara braunii HOM05D001724 ORTHO05D002973 1.4e-07 62.0 115 31.3
Pp3c3_29310 Physcomitrium patens HOM05D001724 ORTHO05D002973 7.2e-07 59.7 133 27.1
SHI26519 Sapria himalayana HOM05D001724 ORTHO05D000023 2.1e-06 58.2 196 20.4
unitig_744.g24042 Utricularia gibba HOM05D001724 ORTHO05D002973 7.9e-06 56.2 91 31.9


User provided reference genes

Program Settings