Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa021476 Carpinus fangiana HOM05D004689 ORTHO05D006269 5.6e-166 587.8 356 100.0
QL03p020097 Quercus lobata HOM05D004689 ORTHO05D006269 1.9e-142 509.6 354 88.1
TAR369G0565 Trochodendron aralioides HOM05D004689 ORTHO05D006269 3.1e-140 502.3 361 84.5
TAR633G1835 Trochodendron aralioides HOM05D004689 ORTHO05D006269 2.6e-139 499.2 361 84.2
CiPaw.10G001700 Carya illinoinensis HOM05D004689 ORTHO05D006269 8.7e-135 484.2 354 87.6
Nn6g35217 Nelumbo nucifera HOM05D004689 ORTHO05D006269 4.3e-134 481.9 357 84.3
FAN14G4883 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.8e-132 476.5 348 82.2
FAN02G2373 Fragaria x ananassa HOM05D004689 ORTHO05D006269 2.4e-132 476.1 344 83.4
arahy.Tifrunner.gnm1.ann1.0YCB9L Arachis hypogaea HOM05D004689 ORTHO05D006269 3.4e-131 472.2 264 92.0
arahy.Tifrunner.gnm1.ann1.98D3Z3 Arachis hypogaea HOM05D004689 ORTHO05D006269 3.4e-131 472.2 264 92.0
CANSAT80G2663 Cannabis sativa HOM05D004689 ORTHO05D006269 8.4e-130 467.6 356 80.3
Atru.chr8.1747 Acer truncatum HOM05D004689 ORTHO05D006269 1.9e-129 466.5 364 83.0
Glyma.13G367400 Glycine max HOM05D004689 ORTHO05D006269 1.9e-129 466.5 265 90.9
Glyma.15G005900 Glycine max HOM05D004689 ORTHO05D006269 3.2e-129 465.7 350 85.7
Phvul.005G180000 Phaseolus vulgaris HOM05D004689 ORTHO05D006269 3.2e-129 465.7 265 90.6
Lalb_Chr04g0254861 Lupinus albus HOM05D004689 ORTHO05D006269 1.2e-128 463.8 264 89.8
FAN05G0091 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.6e-128 461.8 361 79.8
VMungo0917G0001 Vigna mungo HOM05D004689 ORTHO05D006269 7.9e-128 461.1 265 90.6
FAN05G3347 Fragaria x ananassa HOM05D004689 ORTHO05D006269 1.3e-127 460.3 361 79.2
Ca_23152_v3 Cicer arietinum L. HOM05D004689 ORTHO05D006269 1.5e-126 456.8 266 88.3
CSS0004382 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-126 456.4 316 87.0
CSS0024828 Camellia sinensis var. sinensis HOM05D004689 ORTHO05D006269 1.9e-126 456.4 316 87.0
Lalb_Chr10g0099851 Lupinus albus HOM05D004689 ORTHO05D006269 1.9e-126 456.4 348 79.9
PGSC0003DMG400003874 Solanum tuberosum HOM05D004689 ORTHO05D006269 4.3e-126 455.3 348 78.4
Lj3g0015942 Lotus japonicus HOM05D004689 ORTHO05D006269 7.4e-126 454.5 245 91.0
DCAR_020804 Daucus carota HOM05D004689 ORTHO05D006269 2.8e-125 452.6 348 81.6
Peaxi162Scf00407g00631 Petunia axillaris HOM05D004689 ORTHO05D006269 2.8e-125 452.6 349 77.7
MSTRG.19190 Avicennia marina HOM05D004689 ORTHO05D006269 4.8e-125 451.8 349 80.5
Medtr8g009970 Medicago truncatula HOM05D004689 ORTHO05D006269 6.2e-125 451.4 266 88.3
EL10Ac7g16690 Beta vulgaris HOM05D004689 ORTHO05D006269 8.2e-125 451.1 346 80.3
CsaV3_3G036230 Cucumis sativus L. HOM05D004689 ORTHO05D006269 1.1e-124 450.7 346 85.0
GSVIVG01033687001 Vitis vinifera HOM05D004689 ORTHO05D006269 1.1e-124 450.7 237 93.7
RcHm_v2.0_Chr7g0191101 Rosa chinensis HOM05D004689 ORTHO05D006269 2.4e-124 449.5 353 74.8
Potri.016G097600 Populus trichocarpa HOM05D004689 ORTHO05D006269 1.5e-123 446.8 350 79.1
TWI74G0641 Tripterygium wilfordii HOM05D004689 ORTHO05D006269 3.4e-123 445.7 346 80.9
FAN09G4523 Fragaria x ananassa HOM05D004689 ORTHO05D006269 4.5e-123 445.3 364 79.9
PSO675G8307 Papaver somniferum HOM05D004689 ORTHO05D006269 4.5e-123 445.3 335 80.3
Prupe.7G125300 Prunus persica HOM05D004689 ORTHO05D006269 7.6e-123 444.5 334 83.2
TPR.G17360 Trifolium pratense HOM05D004689 ORTHO05D006269 7.6e-123 444.5 268 87.3
Sed0022535 Sechium edule HOM05D004689 ORTHO05D006269 1.0e-122 444.1 316 84.2
MELO3C009381.2 Cucumis melo HOM05D004689 ORTHO05D006269 1.7e-122 443.4 355 82.8
Actinidia32476 Actinidia chinensis HOM05D004689 ORTHO05D006269 2.9e-122 442.6 240 92.1
Duzib128G1555 Durio zibethinus HOM05D004689 ORTHO05D006269 2.9e-122 442.6 351 76.4
Ciclev10012150m.g Citrus clementina HOM05D004689 ORTHO05D006269 5.0e-122 441.8 354 81.1
AUR62026953 Chenopodium quinoa HOM05D004689 ORTHO05D006269 6.5e-122 441.4 239 90.0
SGA_v2.0_scaffold40G15470 Striga asiatica HOM05D004689 ORTHO05D006269 6.5e-122 441.4 349 79.4
Ah.15g091430 Amaranthus hybridus HOM05D004689 ORTHO05D006269 1.9e-121 439.9 241 90.0
unitig_26.g9238 Utricularia gibba HOM05D004689 ORTHO05D006269 4.2e-121 438.7 239 90.8
RcHm_v2.0_Chr3g0470901 Rosa chinensis HOM05D004689 ORTHO05D006269 6.1e-120 434.9 350 79.7
Lsat_1_v5_gn_1_52460 Lactuca sativa HOM05D004689 ORTHO05D006269 1.8e-119 433.3 235 90.2
Oeu042111.1 Olea europaea HOM05D004689 ORTHO05D006269 2.3e-119 433.0 348 77.0
Sopen09g003300 Solanum pennellii HOM05D004689 ORTHO05D006269 2.3e-119 433.0 349 79.1
Ah.08g211440 Amaranthus hybridus HOM05D004689 ORTHO05D006269 3.9e-119 432.2 264 85.6
ECA238G3499 Erigeron canadensis HOM05D004689 ORTHO05D006269 3.9e-119 432.2 235 91.1
PSO541G4270 Papaver somniferum HOM05D004689 ORTHO05D006269 5.1e-119 431.8 337 78.9
RhsimUnG0004400 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.1e-119 431.8 267 86.1
RhsimUnG0067800 Rhododendron simsii HOM05D004689 ORTHO05D006269 5.1e-119 431.8 267 86.1
Solyc09g008470.4 Solanum lycopersicum HOM05D004689 ORTHO05D006269 5.1e-119 431.8 260 86.2
Hund19382 Selenicereus undatus HOM05D004689 ORTHO05D006269 2.5e-118 429.5 241 89.2
Potri.006G121300 Populus trichocarpa HOM05D004689 ORTHO05D006269 3.3e-118 429.1 351 74.4
CDE06G0795 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 4.3e-118 428.7 244 88.1
Sc20g0005690 Simmondsia chinensis HOM05D004689 ORTHO05D006269 5.7e-118 428.3 242 87.6
Migut.J00456 Erythranthe guttata HOM05D004689 ORTHO05D006269 7.4e-118 427.9 348 73.0
Eucgr.K02436 Eucalyptus grandis HOM05D004689 ORTHO05D006269 1.3e-117 427.2 222 93.7
PGR119G0162 Punica granatum HOM05D004689 ORTHO05D006269 1.3e-117 427.2 222 92.3
Gohir.D09G140400 Gossypium hirsutum HOM05D004689 ORTHO05D006269 2.2e-117 426.4 346 78.3
Gorai.006G161000 Gossypium raimondii HOM05D004689 ORTHO05D006269 2.2e-117 426.4 346 78.3
CDE03G0163 Ceratophyllum demersum HOM05D004689 ORTHO05D006269 2.8e-117 426.0 244 87.7
Gohir.A09G144600 Gossypium hirsutum HOM05D004689 ORTHO05D006269 1.8e-116 423.3 346 78.0
Aqoxy2G01650 Aquilegia oxysepala HOM05D004689 ORTHO05D006269 1.5e-115 420.2 220 92.3
MD12G1106500 Malus domestica HOM05D004689 ORTHO05D006269 1.5e-115 420.2 354 74.3
ClCG10G019870 Citrullus lanatus HOM05D004689 ORTHO05D006269 2.6e-115 419.5 366 79.0
Nitab4.5_0003314g0100 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.7e-115 417.9 348 79.3
Thecc.05G071900 Theobroma cacao HOM05D004689 ORTHO05D006269 2.9e-114 416.0 346 76.9
CARHR126450 Cardamine hirsuta HOM05D004689 ORTHO05D006269 3.8e-114 415.6 228 88.6
Thecc.05G071600 Theobroma cacao HOM05D004689 ORTHO05D006269 5.0e-114 415.2 346 76.6
COL.COLO4_26909 Corchorus olitorius HOM05D004689 ORTHO05D006269 6.5e-114 414.8 220 91.8
THA.LOC104816037 Tarenaya hassleriana HOM05D004689 ORTHO05D006269 6.5e-114 414.8 228 88.6
Aa31LG5G4730 Aethionema arabicum HOM05D004689 ORTHO05D006269 5.5e-113 411.8 235 86.8
HanXRQChr13g0402661 Helianthus annuus HOM05D004689 ORTHO05D006269 7.2e-113 411.4 220 90.5
Hma1.2p1_0225F.1_g095000 Hydrangea macrophylla HOM05D004689 ORTHO05D006269 9.4e-113 411.0 349 77.9
AL4G28000 Arabidopsis lyrata HOM05D004689 ORTHO05D006269 1.0e-111 407.5 228 87.3
AT2G32600 Arabidopsis thaliana HOM05D004689 ORTHO05D006269 1.8e-111 406.8 228 87.3
Carub.0004s1393 Capsella rubella HOM05D004689 ORTHO05D006269 1.1e-110 404.1 242 83.9
Cc06_g04560 Coffea canephora HOM05D004689 ORTHO05D006269 2.0e-110 403.3 397 65.7
Zm00001eb398100 Zea mays HOM05D004689 ORTHO05D006269 2.5e-110 402.9 241 83.0
Sp4g14930 Schrenkiella parvula HOM05D004689 ORTHO05D006269 3.3e-110 402.5 224 87.9
C04p17070 Brassica napus HOM05D004689 ORTHO05D006269 1.3e-109 400.6 228 85.5
BolC4t23259H Brassica oleracea HOM05D004689 ORTHO05D006269 1.3e-109 400.6 228 85.5
A05p13300 Brassica napus HOM05D004689 ORTHO05D006269 1.7e-109 400.2 228 85.5
BraA05t20271Z Brassica rapa HOM05D004689 ORTHO05D006269 1.7e-109 400.2 228 85.5
Sabra06G0095500 Salix brachista HOM05D004689 ORTHO05D006269 2.2e-109 399.8 433 59.4
AagrBONN_evm.TU.Sc2ySwM_344.454 Anthoceros agrestis HOM05D004689 ORTHO05D006269 4.8e-109 398.7 232 87.1
Thhalv10017051m.g Eutrema salsugineum HOM05D004689 ORTHO05D006269 8.2e-109 397.9 228 86.0
HPP92_017214 Vanilla planifolia HOM05D004689 ORTHO05D006269 5.3e-108 395.2 346 74.3
Lj3C990G15 Lonicera japonica HOM05D004689 ORTHO05D006269 6.9e-108 394.8 209 91.9
Zm00001eb011590 Zea mays HOM05D004689 ORTHO05D006269 1.0e-106 391.0 241 81.3
Pp3c15_8160 Physcomitrium patens HOM05D004689 ORTHO05D006269 1.3e-106 390.6 258 80.6
Mapoly0069s0004 Marchantia polymorpha HOM05D004689 ORTHO05D006269 2.2e-106 389.8 245 80.8
Pp3c9_13030 Physcomitrium patens HOM05D004689 ORTHO05D006269 2.5e-105 386.3 258 77.5
Os03g0263500 Oryza sativa ssp. japonica HOM05D004689 ORTHO05D006269 2.1e-104 383.3 233 81.1
CBR_g54837 Chara braunii HOM05D004689 ORTHO05D006269 6.1e-104 381.7 263 75.7
MD04G1088800 Malus domestica HOM05D004689 ORTHO05D006269 1.8e-103 380.2 208 91.8
SMO228G0117 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 9.1e-100 367.9 243 77.0
Haze_19437 Corylus avellana HOM05D004689 ORTHO05D006269 3.5e-99 365.9 249 98.4
CAN.G1038.16 Capsicum annuum HOM05D004689 ORTHO05D006269 2.1e-96 356.7 288 81.6
Carub.0007s3257 Capsella rubella HOM05D004689 ORTHO05D006269 9.7e-94 347.8 241 74.7
AagrBONN_evm.TU.Sc2ySwM_344.3364 Anthoceros agrestis HOM05D004689 ORTHO05D006269 6.5e-90 335.1 181 91.7
Psat1g060440 Pisum sativum HOM05D004689 ORTHO05D006269 4.7e-88 328.9 342 54.1
Prupe.4G071900 Prunus persica HOM05D004689 ORTHO05D006269 1.5e-86 323.9 228 74.6
MCO12G316 Micromonas commoda HOM05D004689 ORTHO05D006269 2.0e-86 323.6 240 70.0
Cre06.g252700 Chlamydomonas reinhardtii HOM05D004689 ORTHO05D006269 2.2e-85 320.1 240 69.2
Manes.09G064318 Manihot esculenta HOM05D004689 ORTHO05D006269 4.8e-85 318.9 176 89.2
vmacro08797 Vaccinium macrocarpon HOM05D004689 ORTHO05D006269 4.1e-84 315.8 570 38.8
Cpa.g.sc87.109 Carica papaya HOM05D004689 ORTHO05D006269 3.8e-82 309.3 348 66.1
FvH4_6g16880 Fragaria vesca HOM05D004689 ORTHO05D006269 2.2e-77 293.5 281 64.8
PRCOL_00004335 Prasinoderma coloniale HOM05D004689 ORTHO05D006269 3.1e-76 289.7 218 66.1
SHI12393 Sapria himalayana HOM05D004689 ORTHO05D006269 2.0e-75 287.0 281 63.3
Haze_05755 Corylus avellana HOM05D004689 ORTHO05D006269 1.5e-73 280.8 252 79.4
Psat6g037120 Pisum sativum HOM05D005082 ORTHO05D006474 1.2e-72 277.7 213 68.1
Haze_26764 Corylus avellana HOM05D004689 ORTHO05D006269 1.2e-70 271.2 189 70.9
Haze_06063 Corylus avellana HOM05D004689 ORTHO05D023802 2.2e-69 266.9 207 84.1
Dinv35815 Davidia involucrata HOM05D004689 ORTHO05D006269 6.4e-69 265.4 150 86.0
Dinv37340 Davidia involucrata HOM05D004689 ORTHO05D006269 1.8e-63 247.3 132 92.4
AUR62043425 Chenopodium quinoa HOM05D004689 ORTHO05D006269 3.5e-59 233.0 225 56.4
BcaB02g10459 Brassica carinata HOM05D004689 ORTHO05D006269 2.8e-56 223.4 195 64.1
SEGI_10194 Sequoiadendron giganteum HOM05D004689 ORTHO05D006269 1.2e-54 218.0 261 64.0
Nitab4.5_0002373g0090 Nicotiana tabacum HOM05D004689 ORTHO05D006269 4.4e-54 216.1 218 76.1
ATR0118G008 Amborella trichopoda HOM05D004689 ORTHO05D006269 1.4e-52 211.1 108 96.3
MBI17_g39322_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 4.1e-52 209.5 107 95.3
VMungo0219G0001 Vigna mungo HOM05D004689 ORTHO05D006269 1.6e-51 207.6 107 95.3
AUR62043819 Chenopodium quinoa HOM05D004689 ORTHO05D006269 1.5e-49 201.1 108 87.0
TAR636G1083 Trochodendron aralioides HOM05D004689 ORTHO05D006269 1.1e-47 194.9 107 88.8
Nitab4.5_0000349g0010 Nicotiana tabacum HOM05D004689 ORTHO05D006269 6.8e-47 192.2 107 88.8
MBI17_g39319_MAGBIO Magnolia biondii HOM05D004689 ORTHO05D006269 8.9e-47 191.8 234 65.4
Actinidia31313 Actinidia chinensis HOM05D004689 ORTHO05D006269 3.4e-46 189.9 102 88.2
SMO031G0002 Selaginella moellendorffii HOM05D004689 ORTHO05D006269 9.2e-44 181.8 92 94.6
Cc00_g23430 Coffea canephora HOM05D004689 ORTHO05D006269 3.0e-42 176.8 95 92.6
Haze_13658 Corylus avellana HOM05D004689 ORTHO05D023802 3.9e-42 176.4 176 77.8
Cc00_g35330 Coffea canephora HOM05D004689 ORTHO05D006269 2.5e-41 173.7 95 91.6
AagrBONN_evm.TU.Sc2ySwM_344.3466 Anthoceros agrestis HOM05D004689 ORTHO05D006269 3.6e-40 169.9 141 68.8
ATR0118G005 Amborella trichopoda HOM05D004689 ORTHO05D006269 9.9e-38 161.8 91 83.5
Haze_05345 Corylus avellana HOM05D004689 ORTHO05D023802 7.8e-35 152.1 154 85.1
Psat0s2549g0120 Pisum sativum HOM05D004689 ORTHO05D006269 2.5e-33 147.1 83 81.9
Psat1g060480 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-30 137.5 71 90.1
Psat1g060520 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-30 137.5 71 90.1
Haze_08899 Corylus avellana HOM05D004689 ORTHO05D165887 2.9e-29 133.7 176 76.1
Nitab4.5_0000349g0040 Nicotiana tabacum HOM05D004689 ORTHO05D006269 7.4e-25 119.0 91 69.2
Psat1g060600 Pisum sativum HOM05D004689 ORTHO05D006269 2.0e-22 110.9 58 89.7
Pp3c4_2800 Physcomitrium patens HOM05D004689 ORTHO05D006269 6.7e-18 95.9 132 51.5
Haze_08645 Corylus avellana HOM05D004689 ORTHO05D023802 2.5e-17 94.0 60 81.7
Haze_23869 Corylus avellana HOM05D000326 ORTHO05D000312 9.0e-15 85.5 128 75.8
MSTRG.5777 Avicennia marina HOM05D004689 ORTHO05D023802 1.4e-12 78.2 145 56.6
Dinv44323 Davidia involucrata HOM05D004689 ORTHO05D183653 5.1e-10 69.7 38 89.5
Dinv25427 Davidia involucrata HOM05D004689 ORTHO05D182071 8.7e-10 68.9 38 86.8
Psat4g215720 Pisum sativum HOM05D002324 ORTHO05D002380 5.7e-09 66.2 103 44.7
Dinv29092 Davidia involucrata HOM05D004689 ORTHO05D185927 5.3e-07 59.7 45 64.4


User provided reference genes

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