Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 2.5e-203 711.8 346 100.0
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 1.4e-134 483.4 333 74.8
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 2.5e-126 456.1 319 73.0
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 6.5e-111 404.8 344 62.5
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 7.7e-104 381.3 340 62.1
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 8.5e-103 377.9 327 61.2
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 2.1e-101 373.2 332 59.0
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 3.6e-101 372.5 332 59.6
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.0e-100 370.9 312 62.8
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 4.0e-100 369.0 352 58.2
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 8.8e-100 367.9 310 63.2
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 8.8e-100 367.9 341 59.2
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 3.4e-99 365.9 332 59.3
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 1.3e-98 364.0 340 59.7
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 2.2e-98 363.2 331 57.4
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 3.7e-98 362.5 319 59.6
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 6.3e-98 361.7 318 59.1
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 3.1e-97 359.4 339 58.1
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 5.4e-97 358.6 340 57.9
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 9.1e-97 357.8 337 57.9
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 4.5e-96 355.5 309 57.3
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 1.7e-95 353.6 351 54.1
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 2.9e-95 352.8 318 58.5
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 8.6e-95 351.3 311 58.2
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 2.5e-94 349.7 338 56.8
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 4.2e-94 349.0 327 58.4
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 5.5e-94 348.6 335 55.5
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 7.2e-94 348.2 316 57.9
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 1.2e-93 347.4 318 58.2
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.8e-92 343.6 311 58.8
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.8e-92 343.6 313 57.8
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 4.0e-92 342.4 315 58.4
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 1.7e-90 337.0 394 51.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 6.3e-90 335.1 327 55.0
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 8.3e-90 334.7 315 57.1
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 9.2e-89 331.3 333 53.5
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.2e-88 330.9 307 57.0
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.2e-88 330.9 307 57.0
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.0e-88 330.1 337 54.6
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 2.0e-88 330.1 311 55.9
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 2.7e-88 329.7 326 53.7
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 3.5e-88 329.3 318 55.0
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 4.5e-88 328.9 316 56.6
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 1.0e-87 327.8 309 56.0
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 3.8e-87 325.9 307 56.0
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 8.6e-87 324.7 337 54.3
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.5e-86 323.2 325 53.8
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 9.5e-86 321.2 227 70.9
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 9.5e-86 321.2 311 54.0
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 2.8e-85 319.7 327 53.8
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 4.7e-85 318.9 310 55.2
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 6.1e-85 318.5 311 55.6
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.0e-84 317.8 306 56.5
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 8.9e-84 314.7 329 53.2
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 2.6e-83 313.2 344 51.7
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 4.4e-83 312.4 363 48.8
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 7.5e-83 311.6 316 53.5
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 9.8e-83 311.2 310 53.2
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 1.3e-82 310.8 318 53.8
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 1.3e-82 310.8 320 54.7
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 3.7e-82 309.3 291 58.4
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 1.4e-81 307.4 322 50.9
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 2.4e-81 306.6 283 57.6
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 3.2e-81 306.2 329 53.2
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 5.4e-81 305.4 322 51.9
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 9.2e-81 304.7 320 53.4
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.6e-80 303.9 332 50.3
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 1.3e-79 300.8 323 52.0
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 1.7e-79 300.4 285 57.2
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 1.7e-79 300.4 323 53.3
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 3.0e-79 299.7 318 51.3
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 6.6e-79 298.5 314 51.0
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 8.6e-79 298.1 321 51.7
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 8.6e-79 298.1 323 54.2
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 1.1e-78 297.7 324 51.2
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 3.6e-77 292.7 334 51.2
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 8.0e-77 291.6 339 50.1
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 1.5e-75 287.3 333 51.1
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 2.6e-75 286.6 315 52.4
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 3.4e-75 286.2 313 53.4
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 3.4e-75 286.2 313 53.4
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 5.8e-75 285.4 312 52.9
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.2e-74 283.5 304 52.3
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 2.9e-74 283.1 317 49.8
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 1.1e-73 281.2 309 49.8
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 5.2e-68 262.3 312 47.1
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 1.1e-65 254.6 292 52.7
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 2.3e-63 246.9 263 53.2
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 1.6e-56 224.2 196 57.7
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 5.4e-49 199.1 307 40.7
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 1.6e-48 197.6 209 53.1
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 9.6e-46 188.3 185 54.1
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.3e-45 188.0 185 54.6
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 1.6e-45 187.6 390 34.1
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 3.8e-42 176.4 167 54.5
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 5.6e-38 162.5 145 56.6
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 1.3e-37 161.4 169 53.8
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 2.9e-34 150.2 230 40.4
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-34 149.1 382 30.9
Solyc07g017250.4 Solanum lycopersicum HOM05D006401 ORTHO05D007864 1.3e-31 141.4 161 47.8
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 8.2e-29 132.1 155 49.0
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 8.4e-26 122.1 106 60.4
Lju50A23T28 Lonicera japonica HOM05D006401 ORTHO05D007864 8.7e-23 112.1 106 56.6
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 5.7e-22 109.4 82 62.2
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 7.4e-22 109.0 145 44.8
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 2.6e-19 100.5 130 43.8
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 3.2e-17 93.6 98 50.0
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 6.7e-15 85.9 260 30.8
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 5.7e-14 82.8 60 61.7
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 3.4e-11 73.6 55 58.2
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 7.9e-08 62.4 240 26.7
CDE06G1859 Ceratophyllum demersum HOM05D004376 ORTHO05D005304 3.0e-07 60.5 189 28.6
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 3.9e-07 60.1 130 31.5
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 5.1e-07 59.7 140 31.4
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 6.7e-07 59.3 142 28.9
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 6.7e-07 59.3 138 31.2
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 6.7e-07 59.3 164 25.0
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 8.8e-07 58.9 121 33.1
Mapoly0001s0557 Marchantia polymorpha HOM05D004376 ORTHO05D005304 1.1e-06 58.5 149 29.5
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 2.0e-06 57.8 34 76.5
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 2.0e-06 57.8 121 32.2
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 2.6e-06 57.4 200 25.0
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 3.3e-06 57.0 143 28.7
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 4.4e-06 56.6 208 27.4
MBI05_g12852_MAGBIO Magnolia biondii HOM05D004376 ORTHO05D005304 7.4e-06 55.8 174 27.0
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 7.4e-06 55.8 121 29.8
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 9.7e-06 55.5 121 30.6
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 9.7e-06 55.5 121 30.6
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 9.7e-06 55.5 180 30.0
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 9.7e-06 55.5 235 23.8


User provided reference genes

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