Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 2.2e-140 502.3 254 100.0
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 1.5e-136 489.6 252 98.0
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 6.7e-113 411.0 251 82.1
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 2.0e-101 372.9 252 71.8
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 4.6e-98 361.7 251 70.1
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 6.7e-97 357.8 252 68.7
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 8.8e-97 357.5 256 69.9
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 2.0e-96 356.3 252 68.7
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 2.2e-95 352.8 252 65.9
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 2.2e-95 352.8 252 69.4
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 8.2e-95 350.9 252 67.1
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 6.9e-94 347.8 251 69.3
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 1.3e-92 343.6 251 67.7
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.7e-92 343.2 252 66.7
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 1.7e-92 343.2 252 66.7
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 3.8e-92 342.0 224 73.2
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 5.5e-91 338.2 252 65.9
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 7.2e-91 337.8 251 67.3
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 9.4e-91 337.4 251 66.9
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 2.1e-90 336.3 248 67.3
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 2.7e-90 335.9 252 61.5
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 2.7e-90 335.9 252 61.5
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 7.9e-90 334.3 251 67.3
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 7.9e-90 334.3 252 64.3
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 1.4e-89 333.6 252 63.9
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 2.3e-89 332.8 252 61.1
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 3.9e-89 332.0 271 59.4
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 6.7e-89 331.3 252 63.5
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 2.6e-88 329.3 259 64.9
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 9.7e-88 327.4 246 62.2
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 3.7e-87 325.5 256 64.5
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 3.7e-87 325.5 253 62.8
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 3.7e-87 325.5 253 63.2
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 5.3e-86 321.6 247 65.2
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 2.0e-85 319.7 256 63.3
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 3.5e-85 318.9 249 63.9
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 5.9e-85 318.2 215 69.8
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 1.0e-84 317.4 252 62.7
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 1.3e-84 317.0 252 60.3
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 1.1e-83 313.9 248 62.9
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 2.5e-83 312.8 254 61.4
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 2.1e-82 309.7 250 63.6
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 2.1e-82 309.7 256 62.5
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 1.0e-81 307.4 205 73.7
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 1.8e-81 306.6 248 61.3
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 1.8e-81 306.6 248 61.3
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 3.0e-81 305.8 252 61.9
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 4.0e-81 305.4 322 49.7
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 5.2e-81 305.1 252 57.5
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 2.0e-80 303.1 249 59.8
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 2.6e-80 302.8 248 61.3
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 3.3e-80 302.4 248 58.5
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 3.3e-80 302.4 248 59.7
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 4.4e-80 302.0 254 57.9
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 5.7e-80 301.6 248 58.5
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 2.8e-79 299.3 252 60.7
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 3.7e-79 298.9 252 58.7
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 3.7e-79 298.9 251 59.8
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 4.8e-79 298.5 248 58.1
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 4.8e-79 298.5 248 58.1
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.4e-78 297.0 236 62.3
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 2.4e-78 296.2 248 56.0
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 4.1e-78 295.4 256 57.4
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 5.3e-78 295.0 243 59.7
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 9.1e-78 294.3 251 56.6
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 9.1e-78 294.3 255 59.6
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.2e-77 293.9 248 60.9
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 1.2e-77 293.9 213 65.3
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 5.9e-77 291.6 255 59.2
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 1.3e-76 290.4 247 56.3
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 1.3e-76 290.4 247 56.3
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.8e-76 288.9 255 58.8
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 6.5e-76 288.1 252 57.1
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 2.5e-75 286.2 253 56.1
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 5.5e-75 285.0 249 57.0
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 1.2e-74 283.9 253 56.5
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 1.6e-74 283.5 252 56.3
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 4.7e-74 282.0 252 55.2
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 4.7e-74 282.0 252 55.6
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 6.1e-74 281.6 251 56.2
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 2.2e-71 273.1 253 54.9
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 2.8e-71 272.7 253 53.8
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 1.2e-69 267.3 251 53.8
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.6e-69 266.9 222 60.4
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 1.3e-68 263.8 247 51.4
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 2.9e-68 262.7 206 62.6
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 5.0e-68 261.9 183 68.3
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 1.2e-66 257.3 228 52.2
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 6.1e-66 255.0 299 49.2
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 1.0e-65 254.2 249 53.0
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 1.0e-65 254.2 251 49.0
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 2.3e-65 253.1 247 49.0
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 5.2e-65 251.9 211 56.9
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 2.0e-64 250.0 146 91.1
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 1.0e-57 227.6 204 52.9
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 3.7e-55 219.2 252 48.4
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 5.4e-54 215.3 248 48.0
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 9.5e-51 204.5 182 55.5
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 1.2e-48 197.6 131 80.2
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 1.3e-47 194.1 122 76.2
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 3.7e-47 192.6 180 54.4
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.6e-45 187.2 253 37.9
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 2.0e-45 186.8 123 69.1
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 1.1e-41 174.5 144 58.3
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 1.8e-41 173.7 199 50.3
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.3e-39 167.5 564 26.8
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 1.9e-38 163.7 279 33.3
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 4.1e-38 162.5 240 35.8
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.3e-31 141.0 238 35.7
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 3.8e-31 139.4 218 31.2
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 1.2e-29 134.4 199 38.2
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 1.5e-24 117.5 142 45.1
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.1e-22 111.3 98 55.1
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 3.2e-22 109.8 110 62.7
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 6.6e-20 102.1 57 98.2
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 2.8e-18 96.7 130 50.0
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.9e-15 86.7 120 34.2
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 1.9e-14 84.0 218 30.7
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.2e-13 81.3 110 36.4
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 1.8e-12 77.4 128 41.4
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 5.1e-12 75.9 120 32.5
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 6.2e-10 68.9 85 43.5
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 1.7e-07 60.8 57 45.6


User provided reference genes

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