Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 4.5e-236 820.8 407 100.0
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 5.7e-231 803.9 405 98.5
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 9.4e-218 760.0 408 92.9
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 1.2e-217 759.6 404 92.3
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 3.9e-216 754.6 408 92.4
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 7.4e-215 750.4 409 91.4
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 2.2e-214 748.8 407 91.2
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.7e-214 748.0 407 90.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 6.3e-214 747.3 403 90.3
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.1e-213 746.5 407 90.7
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.8e-213 745.7 409 90.7
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 4.1e-213 744.6 410 89.8
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 5.3e-213 744.2 407 90.2
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.6e-212 741.9 407 89.9
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 1.9e-210 735.7 411 89.1
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.4e-208 729.6 407 89.2
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 2.3e-208 728.8 413 88.1
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 2.3e-208 728.8 409 88.5
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 1.5e-207 726.1 407 88.5
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 2.0e-207 725.7 407 87.5
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 5.7e-207 724.2 411 87.8
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 9.7e-207 723.4 411 87.8
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.3e-206 723.0 412 88.1
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.7e-206 722.6 412 88.6
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.7e-206 722.6 407 87.0
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.4e-205 719.5 408 88.5
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.4e-205 719.5 423 86.3
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 4.1e-205 718.0 409 88.0
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 7.0e-205 717.2 409 87.3
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.2e-204 716.5 405 88.6
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 1.6e-204 716.1 405 88.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.6e-204 716.1 405 88.6
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.7e-204 715.3 411 87.1
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.9e-204 714.1 405 88.6
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 7.7e-204 713.8 407 88.5
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 1.0e-203 713.4 417 85.9
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.0e-203 713.4 411 86.9
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.3e-203 713.0 408 85.5
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 5.0e-203 711.1 422 85.3
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 6.5e-203 710.7 407 88.5
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.9e-202 709.1 409 86.6
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 4.2e-202 708.0 407 86.7
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 5.5e-202 707.6 409 86.3
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.2e-201 706.4 408 88.5
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.6e-201 706.1 408 87.7
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 2.1e-201 705.7 408 87.3
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.7e-201 705.3 408 85.3
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 3.6e-201 704.9 407 85.7
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 8.0e-201 703.7 418 84.9
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 1.0e-200 703.4 407 87.0
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 1.0e-200 703.4 407 87.0
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 1.0e-200 703.4 404 87.1
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 4.0e-200 701.4 410 85.1
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 6.8e-200 700.7 410 85.6
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 8.8e-200 700.3 407 86.2
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 2.6e-199 698.7 408 85.8
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 4.4e-199 698.0 407 83.0
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 5.7e-199 697.6 412 85.2
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 2.2e-198 695.7 412 85.2
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 2.2e-198 695.7 412 85.2
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.2e-198 695.7 407 86.2
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 2.2e-198 695.7 410 85.4
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 2.2e-198 695.7 371 91.4
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 2.8e-198 695.3 412 85.0
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 4.8e-198 694.5 412 85.7
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 4.8e-198 694.5 408 84.3
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 4.8e-198 694.5 412 85.0
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 8.3e-198 693.7 412 84.7
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.1e-197 693.3 409 84.8
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.8e-197 692.6 420 84.0
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-197 692.2 412 84.7
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.4e-197 692.2 412 85.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.4e-197 692.2 412 85.0
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 2.4e-197 692.2 412 85.7
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 4.1e-197 691.4 407 85.3
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.1e-197 691.4 407 85.3
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.1e-197 691.4 407 85.3
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 5.4e-197 691.0 408 84.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.2e-196 689.9 407 85.0
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 4.5e-196 688.0 412 84.2
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 5.9e-196 687.6 407 84.5
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.9e-195 685.3 410 83.9
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 3.8e-195 684.9 428 81.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 6.5e-195 684.1 419 83.3
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 8.6e-195 683.7 411 83.9
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.9e-194 682.6 416 83.7
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-194 682.6 408 84.1
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 3.3e-194 681.8 411 85.4
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 3.3e-194 681.8 409 83.6
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 5.5e-194 681.0 420 83.1
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 1.6e-193 679.5 408 84.8
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 409 84.4
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 2.1e-193 679.1 409 84.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.4e-192 676.4 411 83.7
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 2.3e-192 675.6 408 82.6
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 2.3e-192 675.6 424 81.1
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 6.8e-192 674.1 414 83.1
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 6.8e-192 674.1 410 82.9
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.2e-191 673.3 408 83.8
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.5e-191 672.9 384 87.2
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 82.9
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 9.8e-191 670.2 380 86.6
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.8e-190 668.7 372 87.6
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 4.1e-189 664.8 378 86.8
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 5.4e-189 664.5 360 89.7
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.2e-188 663.3 357 89.4
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 8.6e-179 630.6 333 91.9
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 4.3e-178 628.2 377 83.8
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.1e-176 623.6 409 78.5
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 5.2e-176 621.3 357 82.6
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.7e-174 615.1 362 80.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.1e-173 613.6 365 81.4
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.4e-173 612.5 359 80.5
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.2e-172 610.1 410 77.8
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 6.6e-163 577.8 346 83.5
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.1e-162 577.0 400 74.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 4.9e-158 561.6 338 84.9
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 1.7e-155 553.1 324 86.4
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.3e-155 552.7 320 85.9
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 5.4e-149 531.6 357 71.4
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 5.6e-146 521.5 396 64.4
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 7.3e-146 521.2 404 69.6
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.6e-146 520.8 313 83.1
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 3.8e-142 508.8 292 88.4
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.4e-141 506.9 268 89.6
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 1.0e-139 500.7 302 85.1
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.3e-137 493.8 345 69.9
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 9.9e-135 484.2 362 66.3
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 2.8e-129 466.1 372 61.8
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.0e-127 459.9 248 89.5
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.8e-120 436.8 282 77.7
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 5.9e-119 431.8 285 76.8
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 8.2e-105 384.8 320 65.9
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 6.5e-102 375.2 290 66.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 1.3e-57 228.0 132 82.6
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 1.7e-57 227.6 132 81.8
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 6.8e-51 205.7 372 36.3
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.1e-48 198.4 118 80.5
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 3.2e-48 196.8 118 80.5
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 9.9e-42 175.3 104 81.7
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 6.4e-41 172.6 103 81.6
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 6.4e-41 172.6 103 81.6
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.2e-36 156.0 101 77.2
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 2.4e-35 154.1 94 78.7
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.1e-32 145.2 94 75.5
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 3.2e-32 143.7 99 75.8
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.2e-26 125.2 148 51.4
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 7.6e-26 122.5 105 63.8
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.4e-24 117.5 71 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.9e-22 110.2 59 86.4
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.8e-19 101.3 81 66.7
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-19 100.9 47 91.5
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 4.0e-19 100.1 62 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 1.5e-18 98.2 59 81.4
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 5.5e-16 89.7 81 65.4
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 2.5e-08 64.3 53 64.2


User provided reference genes

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