Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.0e-197 692.2 342 100.0
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 8.6e-140 500.7 565 53.8
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 3.3e-131 472.2 566 51.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.3e-131 471.1 565 50.8
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 7.3e-131 471.1 568 51.2
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 9.6e-131 470.7 562 51.1
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 9.6e-131 470.7 566 51.4
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.8e-130 469.2 567 51.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 6.2e-130 468.0 565 51.2
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 6.2e-130 468.0 567 51.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 8.1e-130 467.6 567 50.8
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.4e-129 466.8 567 50.8
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.4e-129 466.8 567 50.8
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.8e-129 466.5 567 50.6
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.4e-129 466.1 569 50.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 4.0e-129 465.3 567 50.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 9.0e-129 464.2 562 50.5
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.0e-129 464.2 567 50.4
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.2e-128 463.8 562 50.7
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 1.5e-128 463.4 569 50.6
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 2.0e-128 463.0 567 50.3
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-128 463.0 462 57.8
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 2.6e-128 462.6 562 50.2
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.6e-128 462.6 565 50.3
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 2.6e-128 462.6 567 50.4
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.6e-128 462.6 567 50.4
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 9.9e-128 460.7 565 50.4
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.7e-127 459.9 567 50.1
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.7e-127 459.9 565 50.4
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.2e-127 459.5 567 50.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 2.2e-127 459.5 565 49.4
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 2.2e-127 459.5 562 50.0
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 2.9e-127 459.1 565 49.9
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 2.9e-127 459.1 562 50.2
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 3.8e-127 458.8 567 50.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 3.8e-127 458.8 562 50.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 3.8e-127 458.8 560 50.4
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 4.9e-127 458.4 562 50.0
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 8.4e-127 457.6 567 50.1
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-126 457.2 477 56.0
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 1.4e-126 456.8 567 49.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 2.4e-126 456.1 561 49.9
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.4e-126 456.1 599 48.9
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 2.4e-126 456.1 562 49.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.2e-126 455.7 559 50.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 3.2e-126 455.7 567 49.7
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 4.2e-126 455.3 567 49.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 2.1e-125 453.0 564 49.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 3.5e-125 452.2 550 50.4
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 3.5e-125 452.2 567 49.6
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 4.6e-125 451.8 567 49.7
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 7.8e-125 451.1 564 49.1
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.3e-124 450.3 567 50.1
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.7e-124 449.9 567 48.5
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.7e-124 449.9 565 49.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 2.3e-124 449.5 600 47.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.0e-124 449.1 582 48.1
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 3.0e-124 449.1 567 48.7
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 6.6e-124 448.0 565 48.7
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.6e-124 448.0 567 48.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 8.7e-124 447.6 554 49.6
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 8.7e-124 447.6 566 48.8
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.5e-123 446.8 565 48.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.9e-123 446.4 565 49.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.9e-123 446.4 565 48.8
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 1.9e-123 446.4 567 49.0
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.5e-123 446.0 565 48.0
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.5e-123 446.0 565 48.0
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.3e-123 445.3 567 48.9
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 5.6e-123 444.9 565 47.6
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 7.3e-123 444.5 565 47.8
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 7.3e-123 444.5 565 47.8
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 7.3e-123 444.5 565 47.8
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.8e-122 442.6 564 48.6
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.6e-122 442.2 565 47.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 4.8e-122 441.8 567 48.0
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.1e-121 440.7 554 47.5
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 3.1e-121 439.1 570 48.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 3.1e-121 439.1 622 45.7
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.2e-120 437.2 327 71.3
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.5e-120 436.8 327 71.3
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.3e-119 433.7 327 70.0
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.2e-119 433.0 327 70.6
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 2.9e-119 432.6 325 70.5
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.9e-119 432.6 573 47.3
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.9e-119 431.8 327 70.0
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 6.4e-119 431.4 562 47.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 8.4e-119 431.0 325 69.8
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 8.4e-119 431.0 325 69.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 8.4e-119 431.0 325 69.8
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.4e-118 430.3 327 70.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 1.4e-118 430.3 327 69.1
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 3.2e-118 429.1 327 70.3
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.2e-118 429.1 565 48.1
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 7.1e-118 427.9 321 71.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 2.1e-117 426.4 325 69.5
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 7.9e-117 424.5 525 49.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 2.3e-116 422.9 323 67.8
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 8.7e-116 421.0 325 68.0
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 2.5e-115 419.5 330 67.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.7e-114 415.6 325 66.8
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.7e-114 415.6 325 66.8
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.2e-114 414.8 325 66.2
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 1.8e-113 413.3 326 68.7
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 9.6e-107 391.0 501 49.7
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 1.2e-104 384.0 313 65.2
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.7e-103 380.2 332 63.9
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 6.0e-101 371.7 457 50.3
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 2.5e-99 366.3 327 60.6
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.7e-91 337.8 212 81.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.3e-90 337.4 329 57.4
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.0e-87 327.8 214 77.1
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.9e-86 323.6 490 43.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.5e-86 323.2 214 76.2
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 9.4e-86 321.2 515 40.4
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.9e-84 315.8 304 59.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.8e-82 309.7 212 72.2
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.8e-76 290.4 340 53.2
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 5.2e-76 288.9 279 60.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.1e-73 279.6 395 46.6
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.3e-73 278.9 273 58.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 4.7e-69 265.8 341 51.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.3e-67 259.6 417 41.7
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.4e-67 259.2 375 47.2
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.7e-66 256.1 215 62.3
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.8e-60 237.3 161 75.2
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 7.5e-59 231.9 159 76.1
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-50 204.1 103 93.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.8e-50 203.4 391 37.6
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.9e-50 202.6 167 65.3
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.1e-49 199.9 274 45.3
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 4.6e-40 169.5 149 60.4
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-38 164.1 266 41.0
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 5.2e-36 156.0 161 55.9
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 5.8e-35 152.5 283 37.5
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.7e-32 143.7 302 35.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 5.8e-27 125.9 65 92.3
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.3e-26 124.8 58 96.6
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.2e-26 124.0 58 96.6
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.2e-25 120.2 58 94.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.1e-24 117.5 337 32.0
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-22 111.7 56 96.4
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 5.2e-20 102.8 66 81.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.0e-19 100.9 66 80.3
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 3.4e-19 100.1 49 98.0
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 2.2e-18 97.4 66 75.8
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.9e-17 94.4 52 84.6
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 7.1e-17 92.4 68 72.1
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 4.6e-16 89.7 60 81.7
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 4.6e-16 89.7 52 82.7
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-15 88.2 46 84.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.3e-15 87.4 66 62.1
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 5.1e-15 86.3 51 86.3
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.2e-13 79.3 55 70.9
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 9.9e-11 72.0 51 76.5
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 3.8e-10 70.1 51 72.5
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.5e-06 58.2 62 58.1


User provided reference genes

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