Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 0.0e+00 1643.2 923 100.0
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 0.0e+00 1498.4 923 92.2
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 0.0e+00 1269.2 857 80.7
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 5.8e-308 1060.8 889 67.5
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 2.2e-307 1058.9 895 66.9
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 7.1e-306 1053.9 958 64.9
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.0e-304 1050.0 963 63.3
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 5.7e-303 1044.3 979 64.4
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 7.4e-303 1043.9 966 63.8
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.1e-301 1040.0 953 65.7
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 2.6e-300 1035.4 896 66.0
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 4.5e-300 1034.6 967 63.7
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.3e-299 1033.1 902 65.5
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 1.6e-294 1016.1 863 67.2
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 2.8e-294 1015.4 895 64.7
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 4.1e-293 1011.5 943 63.8
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 6.9e-293 1010.7 895 66.0
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 9.0e-293 1010.4 950 64.7
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 1.2e-292 1010.0 953 64.5
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.5e-291 1003.8 897 64.1
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.4e-290 1003.0 856 67.2
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.6e-289 998.0 949 64.3
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 3.3e-287 991.9 961 65.3
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 4.3e-287 991.5 864 65.3
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 6.3e-286 987.6 863 65.2
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 3.1e-285 985.3 851 65.3
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 8.5e-283 977.2 861 64.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.8e-280 969.5 879 63.7
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 6.7e-280 967.6 881 64.7
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.4e-279 964.9 964 62.7
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 7.4e-279 964.1 948 59.6
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 7.4e-279 964.1 859 64.1
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 9.7e-279 963.8 936 63.2
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.3e-278 963.4 964 62.0
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 4.8e-278 961.4 964 61.9
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 5.9e-276 954.5 933 63.3
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.5e-275 951.0 892 63.2
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 8.0e-273 944.1 856 62.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 6.7e-272 941.0 949 60.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 7.0e-269 931.0 956 62.3
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 7.7e-268 927.5 953 61.0
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 2.2e-267 926.0 880 63.3
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.2e-265 920.2 898 59.0
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 2.1e-265 919.5 917 60.5
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 2.0e-263 912.9 932 60.0
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 6.3e-262 907.9 939 58.3
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 6.3e-262 907.9 946 58.2
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.4e-261 906.7 950 57.4
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.1e-261 905.2 946 56.8
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 2.7e-260 902.5 953 60.2
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 7.7e-260 901.0 841 63.5
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.0e-259 900.6 953 58.8
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.7e-257 892.5 963 56.7
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 6.1e-257 891.3 904 60.0
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.0e-256 890.6 876 59.7
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 3.0e-256 889.0 952 54.8
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.3e-254 883.6 948 57.5
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 2.8e-254 882.5 899 57.6
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 4.9e-254 881.7 867 58.2
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 3.1e-253 879.0 909 57.2
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 4.1e-253 878.6 945 58.5
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.0e-251 874.0 970 58.9
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.0e-251 874.0 797 63.4
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.9e-250 869.8 904 56.5
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 7.3e-250 867.8 952 56.6
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 1.2e-249 867.1 904 56.2
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.1e-249 866.3 896 59.7
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 2.8e-249 865.9 875 59.8
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 3.0e-248 862.4 907 58.0
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 6.8e-248 861.3 992 57.6
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.6e-247 859.4 1022 55.1
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 5.7e-247 858.2 869 58.8
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 4.9e-246 855.1 899 56.7
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 5.9e-244 848.2 914 56.5
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 6.6e-243 844.7 901 56.6
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 1.1e-242 844.0 821 60.0
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.8e-241 839.3 926 56.4
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 6.4e-238 828.2 809 60.9
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.4e-237 826.2 997 53.1
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 2.3e-235 819.7 847 59.3
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 6.6e-227 791.6 953 52.0
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 4.3e-226 788.9 958 51.3
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 7.3e-226 788.1 862 53.7
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.1e-225 786.6 951 51.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 2.8e-225 786.2 935 52.2
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 4.0e-224 782.3 935 52.4
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 5.2e-224 781.9 848 54.2
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 9.9e-223 777.7 902 53.7
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 3.8e-222 775.8 954 50.8
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 3.8e-222 775.8 954 50.8
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.7e-219 766.9 865 54.0
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 1.7e-219 766.9 879 52.9
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 8.6e-219 764.6 955 50.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 3.3e-218 762.7 917 51.3
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 6.2e-217 758.4 956 49.9
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 8.4e-214 748.0 950 50.3
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.0e-211 741.1 937 50.2
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 2.5e-210 736.5 955 49.7
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.0e-208 729.2 937 49.6
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.2e-207 727.6 854 50.8
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 6.4e-206 721.8 871 50.7
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 7.1e-205 718.4 961 48.3
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 3.8e-198 696.0 989 45.7
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.9e-197 693.7 705 57.6
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.4e-197 693.3 616 61.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.5e-191 674.1 942 46.6
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.8e-185 653.3 485 69.7
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.6e-183 646.7 924 46.0
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.4e-176 623.6 923 45.2
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.4e-171 607.8 866 45.7
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 5.7e-170 602.4 909 45.5
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.5e-166 589.0 481 64.4
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 1.4e-165 587.8 477 65.4
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 7.0e-144 515.8 850 41.3
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 5.6e-125 453.0 550 50.2
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 2.8e-116 424.1 902 35.9
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 7.1e-112 409.5 458 64.8
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.0e-102 377.5 482 48.3
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.1e-95 354.8 386 60.6
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.7e-95 354.4 325 57.5
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 4.2e-88 330.5 441 46.7
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 8.7e-86 322.8 295 59.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 4.3e-85 320.5 449 45.2
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.5e-77 295.4 490 47.1
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 3.3e-77 294.3 336 50.0
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.3e-76 292.4 265 58.9
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.0e-71 273.5 414 49.3
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 4.6e-63 247.3 397 50.4
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 6.1e-63 246.9 516 32.6
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 6.7e-62 243.4 171 70.2
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 6.7e-54 216.9 168 64.3
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 9.1e-51 206.5 420 46.2
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 5.9e-50 203.8 1018 25.4
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 6.1e-39 167.2 151 66.9
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.8e-38 165.6 151 66.9
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 2.0e-29 135.6 96 64.6
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.2e-23 116.3 88 65.9
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.8e-23 115.2 202 39.1
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 2.3e-22 112.1 77 68.8
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 1.4e-19 102.8 65 76.9
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.6e-18 99.4 84 51.2
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 4.3e-16 91.3 141 47.5
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.3e-16 90.5 90 62.2
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.1e-15 89.0 90 60.0
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.8e-14 84.0 85 54.1
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 5.4e-11 74.3 87 57.5
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.0e-10 72.4 129 36.4
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 2.1e-07 62.4 57 52.6
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 1.8e-06 59.3 40 62.5


User provided reference genes

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