Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018237 Carpinus fangiana HOM05D005151 ORTHO05D006322 4.1e-69 264.6 135 100.0
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 1.2e-33 146.7 77 92.2
Haze_25954 Corylus avellana HOM05D005151 ORTHO05D006322 4.0e-32 141.7 77 89.6
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 1.7e-30 136.3 77 83.1
Sabra06G0115300 Salix brachista HOM05D005151 ORTHO05D006322 2.9e-30 135.6 77 83.1
Potri.006G145800 Populus trichocarpa HOM05D005151 ORTHO05D006322 1.1e-29 133.7 77 80.5
CiPaw.03G210900 Carya illinoinensis HOM05D005151 ORTHO05D006322 2.4e-29 132.5 77 83.1
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 3.2e-29 132.1 77 81.8
Cfa018999 Carpinus fangiana HOM05D005151 ORTHO05D006322 4.2e-29 131.7 77 81.8
Aqoxy7G03996 Aquilegia oxysepala HOM05D005151 ORTHO05D006322 9.3e-29 130.6 77 80.5
ClCG03G015320 Citrullus lanatus HOM05D005151 ORTHO05D006322 1.2e-28 130.2 77 80.5
Cpa.g.sc28.112 Carica papaya HOM05D005151 ORTHO05D006322 1.6e-28 129.8 77 80.5
vmacro06306 Vaccinium macrocarpon HOM05D005151 ORTHO05D006322 2.1e-28 129.4 77 80.5
Atru.chr12.2297 Acer truncatum HOM05D005151 ORTHO05D006322 2.7e-28 129.0 77 80.5
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 2.7e-28 129.0 77 80.5
MELO3C015499.2 Cucumis melo HOM05D005151 ORTHO05D006322 3.5e-28 128.6 77 79.2
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 4.6e-28 128.3 77 79.2
Rhsim03G0230900 Rhododendron simsii HOM05D005151 ORTHO05D006322 4.6e-28 128.3 77 81.8
Sed0005858 Sechium edule HOM05D005151 ORTHO05D006322 4.6e-28 128.3 77 77.9
Thecc.09G082600 Theobroma cacao HOM05D005151 ORTHO05D006322 4.6e-28 128.3 77 80.5
Manes.16G098700 Manihot esculenta HOM05D005151 ORTHO05D006322 6.0e-28 127.9 77 79.2
Nn8g38754 Nelumbo nucifera HOM05D005151 ORTHO05D006322 6.0e-28 127.9 77 79.2
Duzib150G1015 Durio zibethinus HOM05D005151 ORTHO05D006322 7.8e-28 127.5 77 79.2
COL.COLO4_18151 Corchorus olitorius HOM05D005151 ORTHO05D006322 1.0e-27 127.1 77 80.5
Ca_21304_v3 Cicer arietinum L. HOM05D005151 ORTHO05D006322 1.3e-27 126.7 77 76.6
Lj4g0018142 Lotus japonicus HOM05D005151 ORTHO05D006322 1.3e-27 126.7 77 79.2
Nn6g35560 Nelumbo nucifera HOM05D005151 ORTHO05D006322 1.7e-27 126.3 77 77.9
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 2.3e-27 125.9 77 77.9
TAR149G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 2.3e-27 125.9 77 79.2
TAR624G0089 Trochodendron aralioides HOM05D005151 ORTHO05D006322 2.3e-27 125.9 77 79.2
GSVIVG01015149001 Vitis vinifera HOM05D005151 ORTHO05D006322 2.3e-27 125.9 77 76.6
Glyma.17G052100 Glycine max HOM05D005151 ORTHO05D006322 3.0e-27 125.6 77 76.6
Medtr4g125710 Medicago truncatula HOM05D005151 ORTHO05D006322 3.0e-27 125.6 77 75.3
Psat4g016320 Pisum sativum HOM05D005151 ORTHO05D006322 3.0e-27 125.6 77 75.3
Lalb_Chr07g0181001 Lupinus albus HOM05D005151 ORTHO05D006322 3.9e-27 125.2 77 76.6
Duzib168G1011 Durio zibethinus HOM05D005151 ORTHO05D006322 5.1e-27 124.8 77 77.9
Actinidia29915 Actinidia chinensis HOM05D005151 ORTHO05D006322 6.6e-27 124.4 77 79.2
TPR.G9439 Trifolium pratense HOM05D005151 ORTHO05D006322 6.6e-27 124.4 77 74.0
MBI16_g18211_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 8.7e-27 124.0 77 76.6
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 8.7e-27 124.0 77 77.9
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 8.7e-27 124.0 77 77.9
Eucgr.C03405 Eucalyptus grandis HOM05D005151 ORTHO05D006322 1.1e-26 123.6 77 77.9
Gohir.D06G073100 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.1e-26 123.6 77 77.9
Gorai.010G085400 Gossypium raimondii HOM05D005151 ORTHO05D006322 1.1e-26 123.6 77 77.9
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 1.5e-26 123.2 78 78.2
Phvul.003G133800 Phaseolus vulgaris HOM05D005151 ORTHO05D006322 1.5e-26 123.2 77 74.0
VMungo1215G2073 Vigna mungo HOM05D005151 ORTHO05D006322 1.5e-26 123.2 77 74.0
Gohir.A06G074300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.9e-26 122.9 77 77.9
Actinidia38461 Actinidia chinensis HOM05D005151 ORTHO05D006322 2.5e-26 122.5 77 77.9
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 2.5e-26 122.5 77 76.6
Glyma.13G107300 Glycine max HOM05D005151 ORTHO05D006322 2.5e-26 122.5 77 75.3
Sed0024958 Sechium edule HOM05D005151 ORTHO05D006322 2.5e-26 122.5 77 76.6
BolC1t00925H Brassica oleracea HOM05D005151 ORTHO05D006322 3.3e-26 122.1 77 76.6
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 4.3e-26 121.7 77 75.3
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 4.3e-26 121.7 77 75.3
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 5.6e-26 121.3 77 74.0
MBI15_g27849_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 7.3e-26 120.9 77 77.9
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 7.3e-26 120.9 77 75.3
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 7.3e-26 120.9 77 75.3
C01p09370 Brassica napus HOM05D005151 ORTHO05D006322 9.6e-26 120.6 77 75.3
BraA01t00781Z Brassica rapa HOM05D005151 ORTHO05D006322 9.6e-26 120.6 77 75.3
Thhalv10027356m.g Eutrema salsugineum HOM05D005151 ORTHO05D006322 9.6e-26 120.6 77 75.3
Sp7g27640 Schrenkiella parvula HOM05D005151 ORTHO05D006322 9.6e-26 120.6 77 75.3
AUR62041890 Chenopodium quinoa HOM05D005151 ORTHO05D006322 1.3e-25 120.2 78 76.9
Gohir.A07G013500 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.3e-25 120.2 77 75.3
Gorai.001G014000 Gossypium raimondii HOM05D005151 ORTHO05D006322 1.3e-25 120.2 77 75.3
Aa31LG2G20710 Aethionema arabicum HOM05D005151 ORTHO05D006322 1.6e-25 119.8 77 75.3
Carub.0004s1480 Capsella rubella HOM05D005151 ORTHO05D006322 1.6e-25 119.8 77 75.3
Gohir.D07G013300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 1.6e-25 119.8 77 75.3
BcaC01g01191 Brassica carinata HOM05D005151 ORTHO05D006322 2.1e-25 119.4 77 74.0
A08p19540 Brassica napus HOM05D005151 ORTHO05D006322 2.1e-25 119.4 77 74.0
C03p89080 Brassica napus HOM05D005151 ORTHO05D006322 2.1e-25 119.4 77 74.0
BolC3t21221H Brassica oleracea HOM05D005151 ORTHO05D006322 2.1e-25 119.4 77 74.0
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 2.1e-25 119.4 77 74.0
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 2.8e-25 119.0 77 76.6
Ah.12g064130 Amaranthus hybridus HOM05D005151 ORTHO05D006322 3.6e-25 118.6 79 78.5
AL7G22420 Arabidopsis lyrata HOM05D005151 ORTHO05D006322 3.6e-25 118.6 77 74.0
BcaB03g12621 Brassica carinata HOM05D005151 ORTHO05D006322 3.6e-25 118.6 77 74.0
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 4.8e-25 118.2 85 70.6
AT4G29830 Arabidopsis thaliana HOM05D005151 ORTHO05D006322 6.2e-25 117.9 77 72.7
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 6.2e-25 117.9 77 75.3
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 8.1e-25 117.5 77 72.7
PGR142G4460 Punica granatum HOM05D005151 ORTHO05D006322 8.1e-25 117.5 77 74.0
FvH4_1g30420 Fragaria vesca HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
FAN19G1484 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
FAN23G2025 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
FAN26G3474 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
FAN28G0640 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
FAN28G1692 Fragaria x ananassa HOM05D005151 ORTHO05D006322 1.1e-24 117.1 77 72.7
EL10Ac2g02619 Beta vulgaris HOM05D005151 ORTHO05D006322 1.4e-24 116.7 79 75.9
MD02G1085500 Malus domestica HOM05D005151 ORTHO05D006322 1.8e-24 116.3 77 71.4
Dinv36800 Davidia involucrata HOM05D005151 ORTHO05D006322 2.4e-24 115.9 88 69.3
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 6.9e-24 114.4 77 70.1
BcaC01g01189 Brassica carinata HOM05D005151 ORTHO05D006322 9.0e-24 114.0 77 72.7
Mapoly0001s0052 Marchantia polymorpha HOM05D005151 ORTHO05D006322 9.0e-24 114.0 78 69.2
RcHm_v2.0_Chr3g0490661 Rosa chinensis HOM05D005151 ORTHO05D006322 9.0e-24 114.0 77 71.4
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 3.4e-23 112.1 76 67.1
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 5.8e-23 111.3 77 70.1
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 1.3e-22 110.2 76 67.1
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 2.9e-22 109.0 76 65.8
AagrBONN_evm.TU.Sc2ySwM_344.5188 Anthoceros agrestis HOM05D005151 ORTHO05D006322 8.4e-22 107.5 76 64.5
MSTRG.10530 Avicennia marina HOM05D005151 ORTHO05D006322 1.1e-21 107.1 76 67.1
AagrBONN_evm.TU.Sc2ySwM_344.2105 Anthoceros agrestis HOM05D005151 ORTHO05D006322 1.9e-21 106.3 76 65.8
Oeu051307.1 Olea europaea HOM05D005151 ORTHO05D006322 2.4e-21 105.9 76 67.1
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.4e-21 105.9 80 61.2
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.4e-21 105.9 80 61.2
unitig_699.g19288 Utricularia gibba HOM05D005151 ORTHO05D006322 3.2e-21 105.5 76 67.1
Migut.L01534 Erythranthe guttata HOM05D005151 ORTHO05D006322 4.2e-21 105.1 76 65.8
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 5.4e-21 104.8 76 67.1
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 7.1e-21 104.4 76 63.2
SEGI_01394 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 7.1e-21 104.4 77 64.9
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 1.2e-20 103.6 76 65.8
SGA_v2.0_scaffold23G10051 Striga asiatica HOM05D005151 ORTHO05D006322 2.1e-20 102.8 76 65.8
SalBow1G7018 Salvia bowleyana HOM05D005151 ORTHO05D006322 3.5e-20 102.1 76 65.8
Nitab4.5_0002642g0040 Nicotiana tabacum HOM05D005151 ORTHO05D006322 3.9e-19 98.6 76 60.5
Nitab4.5_0000073g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 5.1e-19 98.2 76 60.5
Cc06_g11820 Coffea canephora HOM05D005151 ORTHO05D006322 6.7e-19 97.8 73 64.4
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 1.9e-18 96.3 76 57.9
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.3e-18 95.5 76 61.8
Sopen12g003960 Solanum pennellii HOM05D005151 ORTHO05D006322 3.3e-18 95.5 76 61.8
PGSC0003DMG400000330 Solanum tuberosum HOM05D005151 ORTHO05D006322 3.3e-18 95.5 76 61.8
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 4.3e-18 95.1 76 59.2
PGSC0003DMG400016078 Solanum tuberosum HOM05D005151 ORTHO05D006322 4.3e-18 95.1 76 59.2
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 5.6e-18 94.7 76 56.6
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 7.4e-18 94.4 76 57.9
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 3.6e-17 92.0 77 57.1
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 8.1e-17 90.9 80 57.5
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 8.1e-17 90.9 76 52.6
SMO244G0035 Selaginella moellendorffii HOM05D005151 ORTHO05D006322 1.1e-16 90.5 85 52.9
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 1.5e-15 86.7 79 55.7
CBR_g54314 Chara braunii HOM05D005151 ORTHO05D006322 7.9e-12 74.3 86 47.7
TAR587G0001 Trochodendron aralioides HOM05D005151 ORTHO05D006322 5.6e-10 68.2 38 86.8
MCO13G438 Micromonas commoda HOM05D005151 ORTHO05D006322 6.9e-08 61.2 77 44.2
HPP92_018271 Vanilla planifolia HOM05D000049 ORTHO05D000027 1.2e-07 60.5 77 46.8


User provided reference genes

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