Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 2.7e-191 671.8 332 100.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 4.3e-160 568.2 337 84.9
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 2.1e-143 512.7 337 76.0
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 3.1e-142 508.8 339 78.5
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 5.2e-142 508.1 330 77.6
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 4.4e-141 505.0 338 75.1
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 9.9e-141 503.8 305 80.0
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.3e-140 503.4 337 76.0
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 4.9e-140 501.5 341 74.5
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 6.4e-140 501.1 339 74.3
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 6.4e-140 501.1 323 78.0
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 4.2e-139 498.4 308 79.5
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 5.4e-139 498.0 320 77.8
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.7e-137 493.0 334 75.7
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.7e-137 493.0 340 74.7
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 5.1e-137 491.5 328 75.9
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 6.6e-137 491.1 341 73.6
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 2.5e-136 489.2 319 76.2
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 3.3e-136 488.8 328 75.9
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 5.6e-136 488.0 278 84.9
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.6e-135 486.5 297 79.8
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.6e-135 486.5 297 79.8
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 2.1e-135 486.1 325 74.8
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 2.1e-135 486.1 325 74.8
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 4.8e-135 485.0 339 72.9
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 4.8e-135 485.0 334 74.3
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 8.1e-135 484.2 319 76.5
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 4.0e-134 481.9 306 77.5
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.9e-134 481.1 330 73.6
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 6.9e-134 481.1 332 72.9
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 1.5e-133 479.9 309 76.7
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 7.6e-133 477.6 284 81.0
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 9.9e-133 477.2 320 74.1
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.7e-132 476.5 351 70.7
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 6.4e-132 474.6 333 71.8
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.1e-131 473.8 337 71.2
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 1.4e-131 473.4 339 72.0
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.2e-130 470.3 336 72.0
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 1.6e-130 469.9 329 71.7
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.1e-130 469.5 338 72.2
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 4.6e-130 468.4 325 72.9
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.8e-129 466.5 334 72.5
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 3.9e-129 465.3 336 70.5
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 8.7e-129 464.2 314 75.5
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 8.7e-129 464.2 336 72.0
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 1.1e-128 463.8 334 69.8
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 1.5e-128 463.4 331 71.0
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 3.3e-128 462.2 338 72.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 7.4e-128 461.1 331 70.7
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 2.8e-127 459.1 306 74.5
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 6.2e-127 458.0 319 73.7
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.2e-127 458.0 333 71.8
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.1e-127 457.6 333 72.4
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.2e-125 453.8 286 76.2
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 4.5e-125 451.8 327 73.7
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.3e-124 450.3 306 74.8
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.2e-124 449.5 337 70.0
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 2.2e-124 449.5 328 69.2
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 2.9e-124 449.1 329 70.8
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.9e-123 446.4 327 70.6
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 2.4e-123 446.0 325 70.5
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 4.2e-123 445.3 295 73.6
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 5.5e-123 444.9 345 65.2
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 7.1e-123 444.5 329 71.4
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 6.0e-122 441.4 258 81.0
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 2.3e-121 439.5 331 68.9
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 3.9e-121 438.7 222 93.2
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.5e-120 436.8 253 83.0
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 2.8e-119 432.6 319 69.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.8e-118 429.9 320 70.3
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 4.0e-118 428.7 225 89.3
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 9.0e-118 427.6 310 69.0
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 1.5e-117 426.8 297 73.4
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 2.0e-117 426.4 341 66.9
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 1.3e-116 423.7 325 68.3
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.7e-116 423.3 228 86.4
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 8.4e-116 421.0 245 80.8
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 3.0e-113 412.5 276 72.8
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 8.7e-113 411.0 232 82.8
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 1.1e-112 410.6 339 64.0
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 3.3e-112 409.1 331 65.9
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 9.7e-112 407.5 333 66.1
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 2.6e-109 399.4 330 64.5
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.5e-108 394.8 344 62.5
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 9.7e-104 380.9 336 62.8
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.7e-103 379.0 206 86.9
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.8e-102 376.7 218 83.0
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 4.1e-102 375.6 275 70.9
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.8e-97 360.1 333 59.8
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 3.0e-97 359.4 367 55.0
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 8.8e-97 357.8 333 59.2
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.3e-96 355.9 257 65.8
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.2e-95 353.2 242 68.2
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 6.3e-95 351.7 227 71.8
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 3.1e-94 349.4 260 69.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 4.2e-91 339.0 486 45.7
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.1e-90 335.1 267 67.4
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 6.5e-84 315.1 262 64.1
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.2e-80 304.3 220 61.8
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.8e-79 298.9 263 55.1
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 8.5e-76 288.1 167 83.2
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 2.1e-74 283.5 335 51.9
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 5.2e-73 278.9 299 51.2
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 8.3e-71 271.6 230 64.3
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 5.9e-69 265.4 220 60.9
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 1.0e-68 264.6 252 56.7
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.3e-63 247.7 213 60.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.8e-60 236.1 182 68.7
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 5.6e-59 232.3 208 53.4
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 7.3e-59 231.9 244 55.3
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.0e-57 228.0 117 87.2
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.0e-49 199.5 160 65.6
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 1.6e-42 177.6 96 85.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 6.4e-39 165.6 109 76.1
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 4.4e-32 142.9 175 38.9
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.8e-29 132.1 155 47.1
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 3.3e-27 126.7 62 90.3
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 7.1e-22 109.0 104 56.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 1.0e-20 105.1 135 46.7
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 9.3e-14 82.0 43 90.7
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.6e-10 71.2 156 37.2
CsaV3_5G018930 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-09 67.8 57 57.9
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.0e-09 65.5 68 51.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.0e-09 65.5 68 51.5
A08p28900 Brassica napus HOM05D006408 ORTHO05D008038 5.8e-08 62.8 55 60.0


User provided reference genes

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