Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa018031 Carpinus fangiana HOM05D004532 ORTHO05D000028 5.2e-145 517.7 260 100.0
Haze_18093 Corylus avellana HOM05D004532 ORTHO05D000028 4.3e-83 312.0 172 91.9
Manes.18G043300 Manihot esculenta HOM05D000042 ORTHO05D000028 7.4e-59 231.5 237 54.4
Thecc.08G094200 Theobroma cacao HOM05D004532 ORTHO05D000028 2.4e-57 226.5 223 57.0
Actinidia38089 Actinidia chinensis HOM05D000042 ORTHO05D000028 3.1e-57 226.1 236 55.5
Duzib116G0629 Durio zibethinus HOM05D004532 ORTHO05D000028 4.1e-57 225.7 223 57.0
GSVIVG01009393001 Vitis vinifera HOM05D001837 ORTHO05D000028 9.1e-57 224.6 221 57.5
Dinv35909 Davidia involucrata HOM05D001837 ORTHO05D000028 2.6e-56 223.0 225 59.1
COL.COLO4_28564 Corchorus olitorius HOM05D000021 ORTHO05D000028 3.8e-55 219.2 224 54.9
Ciclev10001730m.g Citrus clementina HOM05D001837 ORTHO05D000028 5.5e-54 215.3 238 52.1
CiPaw.15G048700 Carya illinoinensis HOM05D000042 ORTHO05D000028 6.1e-53 211.8 207 62.8
MSTRG.1048 Avicennia marina HOM05D000042 ORTHO05D000028 3.9e-52 209.1 224 51.8
Oeu040891.2 Olea europaea HOM05D000042 ORTHO05D000028 5.3e-49 198.7 221 52.5
Gohir.D02G089900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.2e-45 187.6 208 52.4
Hma1.2p1_0923F.1_g237150 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 2.7e-45 186.4 222 49.1
Oeu061838.1 Olea europaea HOM05D000042 ORTHO05D000028 6.1e-45 185.3 229 50.2
Gorai.005G100600 Gossypium raimondii HOM05D000042 ORTHO05D000028 8.8e-44 181.4 208 51.9
Lj4A761T86 Lonicera japonica HOM05D004532 ORTHO05D000028 2.6e-43 179.9 228 49.1
Prupe.1G427500 Prunus persica HOM05D000042 ORTHO05D000028 9.7e-43 177.9 194 56.2
HanXRQChr05g0150571 Helianthus annuus HOM05D001837 ORTHO05D000028 1.7e-42 177.2 235 47.7
Gorai.009G216900 Gossypium raimondii HOM05D000042 ORTHO05D000028 3.7e-42 176.0 219 48.4
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 6.3e-42 175.3 233 45.5
Migut.C00517 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.1e-41 174.5 200 51.0
Sopen04g031890 Solanum pennellii HOM05D000042 ORTHO05D000028 1.0e-39 167.9 233 46.8
Cc10_g05320 Coffea canephora HOM05D001837 ORTHO05D000028 5.0e-39 165.6 229 47.2
CAN.G1054.7 Capsicum annuum HOM05D000042 ORTHO05D000028 4.2e-38 162.5 232 43.5
ECA246G0663 Erigeron canadensis HOM05D000086 ORTHO05D002912 9.4e-38 161.4 234 44.4
Solyc04g078300.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.7e-37 159.8 233 45.1
Nitab4.5_0000934g0190 Nicotiana tabacum HOM05D000042 ORTHO05D000028 4.7e-37 159.1 229 43.7
TAR625G1000 Trochodendron aralioides HOM05D001837 ORTHO05D000028 8.0e-37 158.3 173 54.3
Gohir.A05G207000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.3e-36 156.8 219 44.7
Potri.014G021000 Populus trichocarpa HOM05D004532 ORTHO05D000028 5.2e-36 155.6 176 52.3
HanXRQChr15g0483111 Helianthus annuus HOM05D001837 ORTHO05D000028 1.2e-35 154.5 229 42.4
Ca_15922_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.5e-35 154.1 228 43.4
Glyma.04G043800 Glycine max HOM05D000042 ORTHO05D000028 2.0e-35 153.7 235 43.4
Lsat_1_v5_gn_6_109820 Lactuca sativa HOM05D001837 ORTHO05D000028 2.0e-35 153.7 224 44.2
Medtr3g102570 Medicago truncatula HOM05D001837 ORTHO05D000028 1.7e-34 150.6 217 44.7
TPR.G25555 Trifolium pratense HOM05D000042 ORTHO05D000028 8.3e-34 148.3 228 44.3
Lj1g0023377 Lotus japonicus HOM05D000042 ORTHO05D000028 1.6e-32 144.1 217 42.9
Psat5g040360 Pisum sativum HOM05D000042 ORTHO05D000028 1.7e-31 140.6 234 40.2
Nitab4.5_0007275g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 7.2e-30 135.2 229 40.2
QL02p002913 Quercus lobata HOM05D004532 ORTHO05D000028 1.6e-29 134.0 94 74.5
SGA_v2.0_scaffold26G11297 Striga asiatica HOM05D000042 ORTHO05D000028 1.2e-27 127.9 197 43.7
PGR083G1161 Punica granatum HOM05D001837 ORTHO05D000028 2.0e-27 127.1 147 53.1
Phvul.009G069300 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 4.9e-26 122.5 218 37.2
Gohir.D05G210450 Gossypium hirsutum HOM05D004532 ORTHO05D000028 8.3e-26 121.7 167 45.5
DCAR_008840 Daucus carota HOM05D042413 ORTHO05D000028 1.1e-25 121.3 210 40.0
CANSAT25G2386 Cannabis sativa HOM05D000042 ORTHO05D000028 2.7e-24 116.7 159 47.2
CSS0046201 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 3.3e-22 109.8 201 41.8
Cpa.g.sc21.134 Carica papaya HOM05D004532 ORTHO05D000028 3.3e-22 109.8 101 57.4
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 6.1e-21 105.5 184 42.4
TWI56G1245 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 6.1e-21 105.5 171 44.4
Actinidia08265 Actinidia chinensis HOM05D001837 ORTHO05D000028 1.0e-20 104.8 230 36.1
RcHm_v2.0_Chr6g0295381 Rosa chinensis HOM05D068235 ORTHO05D046661 2.6e-19 100.1 179 39.1
arahy.Tifrunner.gnm1.ann1.TIWB5X Arachis hypogaea HOM05D000042 ORTHO05D000028 3.7e-18 96.3 169 40.2
FAN27G2022 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.1e-17 94.7 116 51.7
Nn5g30466 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.0e-15 88.2 238 35.3
Rhsim07G0222700 Rhododendron simsii HOM05D004532 ORTHO05D000028 1.2e-13 81.3 58 70.7
Nn1g08850 Nelumbo nucifera HOM05D004532 ORTHO05D000028 2.1e-13 80.5 217 32.7
arahy.Tifrunner.gnm1.ann1.JU2Z2L Arachis hypogaea HOM05D004532 ORTHO05D000028 1.4e-12 77.8 96 46.9
FAN13G0077 Fragaria x ananassa HOM05D004532 ORTHO05D000028 2.3e-12 77.0 105 46.7
arahy.Tifrunner.gnm1.ann1.K7VJRA Arachis hypogaea HOM05D000042 ORTHO05D000028 4.0e-12 76.3 76 55.3
FAN18G3338 Fragaria x ananassa HOM05D004532 ORTHO05D000028 4.0e-12 76.3 105 45.7
FAN04G1122 Fragaria x ananassa HOM05D004532 ORTHO05D000028 8.9e-12 75.1 105 44.8
Aqoxy6G00549 Aquilegia oxysepala HOM05D004532 ORTHO05D000028 2.0e-11 73.9 218 32.1
PSO675G3764 Papaver somniferum HOM05D000042 ORTHO05D000028 2.0e-11 73.9 116 39.7
arahy.Tifrunner.gnm1.ann1.L0LNYC Arachis hypogaea HOM05D000042 ORTHO05D000028 5.8e-11 72.4 143 37.1
FvH4_5g38110 Fragaria vesca HOM05D004532 ORTHO05D000028 2.2e-10 70.5 105 44.8
PSO541G4552 Papaver somniferum HOM05D004532 ORTHO05D000028 2.2e-10 70.5 105 39.0
Duzib147G1249 Durio zibethinus HOM05D000042 ORTHO05D000028 2.9e-10 70.1 220 28.6
Gohir.D02G082700 Gossypium hirsutum HOM05D004532 ORTHO05D000028 3.7e-10 69.7 153 36.6
FAN08G2891 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.4e-10 68.9 113 39.8
DCAR_012804 Daucus carota HOM05D000889 ORTHO05D000693 1.1e-09 68.2 219 33.3
Gohir.A02G075600 Gossypium hirsutum HOM05D004532 ORTHO05D000028 1.1e-09 68.2 153 35.9
Medtr5g061740 Medicago truncatula HOM05D004532 ORTHO05D000028 3.2e-09 66.6 122 36.1
Lj1g0009703 Lotus japonicus HOM05D004532 ORTHO05D000028 5.4e-09 65.9 150 35.3
THA.LOC104800165 Tarenaya hassleriana HOM05D004532 ORTHO05D000028 9.2e-09 65.1 135 36.3
Thecc.01G066100 Theobroma cacao HOM05D000042 ORTHO05D000028 9.2e-09 65.1 226 27.4
arahy.Tifrunner.gnm1.ann1.XXIH72 Arachis hypogaea HOM05D004532 ORTHO05D000028 1.2e-08 64.7 119 37.0
Potri.007G087500 Populus trichocarpa HOM05D004532 ORTHO05D000028 1.2e-08 64.7 183 31.1
arahy.Tifrunner.gnm1.ann1.GBX0EQ Arachis hypogaea HOM05D004532 ORTHO05D000028 1.6e-08 64.3 119 37.0
Prupe.1G511300 Prunus persica HOM05D004532 ORTHO05D000028 1.6e-08 64.3 115 37.4
Duzib264G0945 Durio zibethinus HOM05D004532 ORTHO05D000028 2.1e-08 63.9 179 31.8
Thecc.01G107200 Theobroma cacao HOM05D004532 ORTHO05D000028 2.1e-08 63.9 177 32.2
Manes.13G090200 Manihot esculenta HOM05D004532 ORTHO05D000028 2.7e-08 63.5 178 29.2
HPP92_019236 Vanilla planifolia HOM05D004532 ORTHO05D000028 2.7e-08 63.5 112 39.3
COL.COLO4_16480 Corchorus olitorius HOM05D004532 ORTHO05D000028 3.5e-08 63.2 186 31.7
TWI36G0956 Tripterygium wilfordii HOM05D004532 ORTHO05D000028 3.5e-08 63.2 142 35.9
Oeu028403.1 Olea europaea HOM05D000042 ORTHO05D000028 4.6e-08 62.8 198 29.3
MD15G1362500 Malus domestica HOM05D004532 ORTHO05D000028 6.0e-08 62.4 195 30.3
TAR376G0693 Trochodendron aralioides HOM05D004532 ORTHO05D000028 7.8e-08 62.0 210 30.5
CARHR071440 Cardamine hirsuta HOM05D004532 ORTHO05D000028 1.0e-07 61.6 127 36.2
DCAR_001023 Daucus carota HOM05D004532 ORTHO05D000028 1.0e-07 61.6 105 40.0
Hma1.2p1_2300F.1_g319215 Hydrangea macrophylla HOM05D004532 ORTHO05D000028 1.0e-07 61.6 38 78.9
Manes.02G156400 Manihot esculenta HOM05D004532 ORTHO05D000028 1.0e-07 61.6 94 39.4
AT1G77950 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 1.3e-07 61.2 99 40.4
PGR102G2915 Punica granatum HOM05D004532 ORTHO05D000028 1.3e-07 61.2 132 36.4
AL1G35570 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 1.7e-07 60.8 128 35.9
Carub.0002s2487 Capsella rubella HOM05D004532 ORTHO05D000028 1.7e-07 60.8 128 35.9
PGSC0003DMG400021518 Solanum tuberosum HOM05D004532 ORTHO05D000028 1.7e-07 60.8 111 38.7
MBI05_g00776_MAGBIO Magnolia biondii HOM05D004532 ORTHO05D000028 2.3e-07 60.5 192 29.2
Aa31LG4G8020 Aethionema arabicum HOM05D004532 ORTHO05D000028 3.0e-07 60.1 131 35.9
AT1G22130 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 3.0e-07 60.1 100 39.0
Gohir.A11G199400 Gossypium hirsutum HOM05D004532 ORTHO05D000028 3.0e-07 60.1 108 37.0
AT1G77980 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 5.0e-07 59.3 129 34.9
Os06g0223300 Oryza sativa ssp. japonica HOM05D004532 ORTHO05D000028 5.0e-07 59.3 95 38.9
PSO447G0055 Papaver somniferum HOM05D004532 ORTHO05D000028 5.0e-07 59.3 220 26.8
Potri.002G092300 Populus trichocarpa HOM05D004532 ORTHO05D000028 5.0e-07 59.3 130 36.2
GSVIVG01022182001 Vitis vinifera HOM05D004532 ORTHO05D000028 5.0e-07 59.3 177 33.3
PSO210G0302 Papaver somniferum HOM05D004532 ORTHO05D000028 6.6e-07 58.9 222 26.6
AL2G38220 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 8.6e-07 58.5 131 35.1
AL2G38240 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 8.6e-07 58.5 129 34.9
AL2G41850 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 8.6e-07 58.5 131 35.1
CANSAT01G2070 Cannabis sativa HOM05D004532 ORTHO05D000028 8.6e-07 58.5 219 31.1
Thecc.08G112900 Theobroma cacao HOM05D004532 ORTHO05D000028 1.5e-06 57.8 158 33.5
Zm00001eb372610 Zea mays HOM05D004532 ORTHO05D000028 1.5e-06 57.8 94 37.2
Thhalv10019686m.g Eutrema salsugineum HOM05D004532 ORTHO05D000028 1.9e-06 57.4 125 34.4
Gorai.005G093000 Gossypium raimondii HOM05D004532 ORTHO05D000028 1.9e-06 57.4 144 34.7
QL06p050456 Quercus lobata HOM05D004532 ORTHO05D000028 1.9e-06 57.4 85 41.2
Sp1g19630 Schrenkiella parvula HOM05D004532 ORTHO05D000028 1.9e-06 57.4 138 31.2
Sed0009551 Sechium edule HOM05D004532 ORTHO05D000028 1.9e-06 57.4 93 39.8
arahy.Tifrunner.gnm1.ann1.E90NZE Arachis hypogaea HOM05D000042 ORTHO05D000028 3.3e-06 56.6 99 37.4
CDE05G0225 Ceratophyllum demersum HOM05D000262 ORTHO05D000300 3.3e-06 56.6 168 29.2
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 4.3e-06 56.2 100 36.0
BraA08t34789Z Brassica rapa HOM05D004532 ORTHO05D000028 4.3e-06 56.2 100 36.0
CsaV3_4G030750 Cucumis sativus L. HOM05D004532 ORTHO05D000028 4.3e-06 56.2 104 37.5
Dinv21942 Davidia involucrata HOM05D004532 ORTHO05D000028 4.3e-06 56.2 93 41.9
CARHR071430 Cardamine hirsuta HOM05D004532 ORTHO05D000028 5.6e-06 55.8 110 37.3
Cpa.g.sc66.98 Carica papaya HOM05D004532 ORTHO05D000028 7.3e-06 55.5 105 36.2
ECA240G0753 Erigeron canadensis HOM05D004532 ORTHO05D000028 7.3e-06 55.5 112 32.1
Gohir.D11G224800 Gossypium hirsutum HOM05D004532 ORTHO05D000028 7.3e-06 55.5 110 36.4
Sc03g0002290 Simmondsia chinensis HOM05D004532 ORTHO05D000028 7.3e-06 55.5 135 34.1
HanXRQChr03g0091451 Helianthus annuus HOM05D000042 ORTHO05D000028 9.5e-06 55.1 93 35.5
SalBow3G2719 Salvia bowleyana HOM05D000042 ORTHO05D000028 9.5e-06 55.1 106 41.5


User provided reference genes

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