Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 7.5e-197 690.3 335 100.0
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 5.4e-163 577.8 338 85.8
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.5e-157 559.7 343 82.2
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.4e-157 558.5 340 80.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 2.1e-154 549.3 339 80.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.7e-154 548.9 340 79.4
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.8e-153 546.2 340 78.2
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.1e-150 535.4 338 79.0
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 3.8e-148 528.5 339 77.3
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 8.4e-148 527.3 341 75.7
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.9e-147 526.2 340 76.5
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.5e-147 524.6 343 76.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-146 523.5 341 76.5
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.1e-146 522.7 342 73.7
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 6.0e-146 521.2 340 75.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 7.9e-146 520.8 325 79.1
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.0e-145 520.4 342 73.7
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.1e-144 516.9 333 75.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.9e-144 516.2 345 73.6
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.9e-144 516.2 340 74.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.3e-144 515.0 334 75.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.3e-143 513.5 335 74.3
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.3e-143 513.5 342 75.7
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-142 510.0 329 76.0
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.4e-142 510.0 339 73.5
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.4e-142 509.2 344 74.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.4e-142 509.2 341 74.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.1e-142 508.4 334 74.6
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.3e-142 508.1 339 73.7
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.3e-142 508.1 321 77.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 5.3e-142 508.1 330 75.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 5.3e-142 508.1 344 73.5
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 9.0e-142 507.3 329 75.1
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.5e-141 506.5 329 75.4
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.5e-141 506.5 339 72.6
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 2.6e-141 505.8 345 73.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.6e-141 505.8 338 73.7
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 4.5e-141 505.0 320 76.6
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.5e-141 505.0 340 74.4
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.0e-140 503.8 329 75.4
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 2.9e-140 502.3 309 79.6
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.9e-140 502.3 336 74.7
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 6.5e-140 501.1 345 72.5
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.4e-139 500.0 340 72.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.9e-139 499.6 329 74.8
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.2e-139 498.8 340 70.3
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 4.2e-139 498.4 337 73.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.6e-138 496.5 339 72.9
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.1e-138 496.1 340 72.4
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.1e-138 496.1 353 70.3
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.6e-138 495.4 335 72.8
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 1.0e-137 493.8 341 70.1
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.3e-137 493.4 344 72.7
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.3e-137 492.7 348 71.8
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.0e-137 492.3 322 74.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 3.0e-137 492.3 341 69.8
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 3.0e-137 492.3 341 69.8
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 3.9e-137 491.9 340 69.7
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 6.7e-137 491.1 340 69.7
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 8.7e-137 490.7 341 69.8
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 8.7e-137 490.7 341 69.8
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 8.7e-137 490.7 337 72.4
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 8.7e-137 490.7 340 72.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.5e-136 490.0 346 72.5
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 1.9e-136 489.6 326 73.0
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 3.3e-136 488.8 352 70.5
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 4.3e-136 488.4 340 71.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 5.7e-136 488.0 341 72.1
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 7.4e-136 487.6 326 73.0
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 1.6e-135 486.5 340 68.8
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.8e-135 485.7 333 71.5
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 3.7e-135 485.3 333 71.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 4.8e-135 485.0 325 71.4
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.2e-135 484.2 341 69.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 8.2e-135 484.2 337 71.8
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.4e-134 483.4 338 70.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 4.1e-134 481.9 339 72.0
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 5.3e-134 481.5 340 68.5
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 6.9e-134 481.1 324 72.2
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 2.9e-132 475.7 324 71.9
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 5.0e-132 474.9 337 68.8
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 6.5e-132 474.6 337 69.4
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 8.5e-132 474.2 336 68.8
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 8.5e-132 474.2 336 69.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-131 473.4 335 71.6
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.9e-131 473.0 384 64.3
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.2e-131 471.9 335 69.9
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.2e-131 471.9 335 71.6
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 4.2e-131 471.9 308 74.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.8e-129 466.5 345 69.6
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 9.7e-128 460.7 332 68.4
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 2.2e-127 459.5 312 73.7
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 3.7e-127 458.8 309 70.2
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.8e-127 458.4 323 71.8
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.4e-125 452.2 333 68.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 5.9e-125 451.4 339 65.2
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.7e-124 449.9 337 67.4
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.9e-123 446.4 349 66.8
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 3.2e-123 445.7 333 65.2
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 5.5e-123 444.9 303 73.3
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 3.6e-122 442.2 315 67.0
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 7.9e-122 441.0 339 66.7
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.1e-120 437.2 303 71.6
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 2.0e-120 436.4 333 64.9
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 2.6e-120 436.0 343 64.1
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.3e-119 433.7 310 67.4
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.8e-119 431.8 340 64.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 4.5e-117 425.2 307 65.8
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 8.5e-116 421.0 268 76.9
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.9e-115 419.9 361 59.8
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.7e-114 416.0 313 66.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 8.0e-114 414.5 343 60.3
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.7e-112 408.3 318 65.4
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.4e-110 402.9 263 75.3
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.5e-109 399.1 283 68.6
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.8e-108 395.6 310 61.9
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 8.5e-108 394.4 289 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 2.1e-106 389.8 306 61.1
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.7e-106 389.4 330 58.8
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 9.8e-104 380.9 246 77.2
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 4.8e-103 378.6 327 57.2
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.4e-102 377.1 306 61.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.4e-102 375.2 397 51.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.6e-100 367.9 287 64.8
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 9.5e-99 364.4 315 57.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 3.3e-83 312.8 306 54.9
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 1.6e-82 310.5 222 68.5
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 8.9e-81 304.7 248 61.3
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 7.5e-80 301.6 260 60.0
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-76 290.8 233 59.7
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.7e-76 290.4 298 51.7
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.4e-73 280.8 170 78.8
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 6.8e-73 278.5 317 49.2
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.2e-70 269.6 235 57.0
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 1.2e-64 251.1 264 53.4
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.1e-61 240.4 141 78.7
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.9e-59 233.8 130 83.1
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.2e-56 224.6 140 72.9
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.2e-53 214.5 119 81.5
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 7.3e-51 205.3 148 66.9
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.5e-35 154.5 90 80.0
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 8.2e-26 122.1 75 69.3
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 6.9e-25 119.0 64 84.4
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.3e-23 114.8 179 43.0
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 1.7e-23 114.4 77 70.1
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.0e-23 112.8 64 79.7
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 5.5e-22 109.4 80 71.2
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 3.6e-21 106.7 72 68.1
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-16 91.7 55 78.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 2.2e-15 87.4 76 59.2
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 7.9e-13 79.0 206 28.2
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.7e-11 72.0 41 78.0
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 2.4e-09 67.4 95 37.9
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.5e-08 64.7 194 29.9
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 5.9e-08 62.8 77 48.1
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 2.9e-07 60.5 202 24.8
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 5.0e-07 59.7 207 27.5
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 6.5e-07 59.3 151 29.8


User provided reference genes

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