Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 2480.7 1305 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 2313.5 1303 92.9
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 2197.2 1303 88.0
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 2187.5 1535 79.5
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 2162.9 1303 87.2
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 2135.9 1303 85.3
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 2108.2 1303 84.3
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 2096.6 1303 84.4
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 2092.4 1303 84.2
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 2066.6 1307 84.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 2044.2 1303 82.6
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 2040.4 1303 83.1
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 2029.6 1351 80.1
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 2016.1 1303 82.0
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 2003.4 1303 80.5
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 2003.4 1431 75.4
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1998.4 1303 81.0
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1995.7 1303 80.0
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1983.4 1303 79.7
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1963.7 1303 79.2
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1951.4 1303 78.4
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1946.8 1303 78.8
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1936.0 1303 78.1
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1932.9 1303 77.7
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1922.5 1303 76.9
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1920.6 1303 78.2
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1907.5 1303 76.7
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1895.6 1196 83.5
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1893.2 1303 75.4
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1891.7 1304 76.8
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1888.2 1303 77.0
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1874.0 1303 76.1
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1873.2 1303 76.1
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1865.5 1303 76.0
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1859.3 1303 76.0
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1855.9 1303 75.1
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1854.0 1303 74.9
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1846.6 1318 74.1
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1824.7 1303 73.7
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1822.8 1329 74.1
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1819.3 1303 73.8
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1818.1 1303 75.9
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1817.7 1303 74.3
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1817.0 1303 72.8
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1816.2 1303 74.0
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1810.8 1311 73.4
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1807.0 1356 71.2
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1805.8 1303 74.0
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1805.4 1303 72.5
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1796.9 1387 71.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1795.8 1326 73.0
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1793.1 1303 73.6
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1789.6 1303 73.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1787.3 1318 73.1
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1786.9 1318 73.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1786.9 1345 71.9
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1783.1 1261 74.7
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1782.3 1196 79.2
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1748.8 1303 72.5
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1748.0 1303 70.8
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1730.3 1254 73.2
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1725.7 1323 70.4
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1695.2 1304 70.4
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1694.5 1304 70.5
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1694.1 1304 70.5
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1680.2 1304 69.9
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1677.9 1303 68.3
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1677.1 1304 68.2
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1669.8 1303 68.0
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1668.7 1303 68.5
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1663.7 1356 68.5
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1636.7 1303 67.5
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1630.9 1303 67.2
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1629.4 1303 66.3
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1616.3 1305 66.7
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1289.2 1303 54.2
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1213.0 1025 65.3
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 0.0e+00 1210.3 1062 60.6
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1163.3 1304 50.2
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1136.7 1313 49.0
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1135.6 888 68.9
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 0.0e+00 1087.0 730 77.1
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 4.8e-308 1061.6 1045 56.8
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.0e-305 1053.9 892 62.6
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 7.2e-304 1047.7 745 74.4
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 1.8e-299 1033.1 1305 46.7
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 7.2e-296 1021.1 669 81.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 1.4e-291 1006.9 767 70.4
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 7.3e-288 994.6 631 81.3
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 9.5e-288 994.2 631 81.1
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 8.0e-287 991.1 1098 52.5
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 6.4e-276 954.9 1241 46.9
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 6.4e-276 954.9 761 65.8
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 1.9e-259 900.2 715 67.4
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 2.5e-256 889.8 776 64.6
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 4.9e-252 875.5 631 74.0
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.1e-247 858.2 596 76.0
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.1e-247 858.2 596 76.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.9e-244 849.0 558 79.7
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.3e-241 840.1 714 61.2
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 3.1e-230 803.1 735 62.6
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 2.1e-226 790.4 1264 40.0
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 3.4e-213 746.5 593 69.5
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 1.3e-172 611.7 1364 33.4
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 5.8e-168 596.3 522 62.5
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.2e-160 572.0 336 87.2
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 3.7e-159 567.0 444 69.8
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 7.8e-157 559.3 457 68.1
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 2.3e-148 531.2 361 74.8
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 4.0e-145 520.4 431 65.4
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 7.6e-144 516.2 1337 30.6
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.9e-142 511.5 1377 30.6
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 7.1e-134 483.0 282 86.5
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 3.2e-126 457.6 394 65.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 7.4e-123 446.4 853 38.8
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.1e-122 444.9 408 61.8
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.1e-122 444.9 246 91.1
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 1.4e-121 442.2 1320 27.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 3.4e-120 437.6 222 97.3
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.3e-116 425.6 318 72.6
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 3.8e-111 407.5 224 89.3
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 7.2e-110 403.3 251 83.3
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.7e-90 337.8 223 78.9
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 3.7e-90 337.8 235 73.6
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.0e-88 332.0 173 94.2
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 7.8e-64 250.4 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.9e-54 219.2 140 82.9
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 2.0e-51 209.1 139 82.0
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 2.9e-50 205.3 192 58.3
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 8.6e-47 193.7 165 63.6
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 1.6e-45 189.5 170 59.4
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 1.7e-42 179.5 226 50.9
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 8.6e-39 167.2 88 95.5
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.8e-36 157.5 106 79.2
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 4.9e-34 151.4 174 51.1
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 8.4e-34 150.6 114 70.2
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.1e-33 150.2 72 95.8
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 8.7e-23 114.0 100 63.0
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.1e-22 113.6 91 68.1
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 1.3e-21 110.2 64 85.9
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 4.8e-21 108.2 64 81.2
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.4e-20 106.7 106 59.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 2.4e-20 105.9 77 75.3
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 4.6e-16 91.7 106 51.9
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.0e-15 90.5 90 58.9
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 4.3e-14 85.1 281 28.5
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 2.1e-13 82.8 77 57.1
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 8.4e-10 70.9 63 65.1
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 2.1e-08 66.2 61 65.6
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 2.7e-08 65.9 56 69.6
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 1.1e-06 60.5 33 87.9


User provided reference genes

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