Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.0e-186 655.6 322 100.0
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 2.1e-159 565.8 322 88.8
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 5.6e-149 531.2 315 81.9
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 6.3e-124 448.0 323 68.4
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 3.1e-123 445.7 320 69.1
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 1.2e-122 443.7 319 67.1
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.5e-122 443.4 320 68.4
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 3.8e-121 438.7 317 67.5
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 5.1e-118 428.3 319 66.5
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.9e-117 426.4 319 66.5
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 2.8e-116 422.5 324 65.4
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 6.3e-116 421.4 323 63.8
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.1e-115 420.6 314 65.9
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.4e-115 419.5 314 65.9
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 2.4e-115 419.5 327 63.9
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.4e-115 419.5 321 67.0
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.9e-114 414.8 308 66.6
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 2.2e-113 412.9 314 65.3
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 3.8e-113 412.1 321 63.6
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 2.5e-112 409.5 319 63.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 1.8e-110 403.3 323 61.3
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 3.9e-110 402.1 317 61.8
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 5.1e-110 401.7 374 56.1
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.3e-108 397.1 327 61.2
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.8e-108 396.0 327 60.9
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 6.3e-108 394.8 324 62.0
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.4e-107 393.7 274 68.2
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 3.1e-107 392.5 325 60.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 5.3e-107 391.7 319 62.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 1.5e-106 390.2 318 59.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 4.5e-106 388.7 302 61.9
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 5.9e-106 388.3 329 59.6
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 5.9e-106 388.3 316 63.6
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.0e-105 387.5 317 60.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 1.7e-105 386.7 337 59.1
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 1.7e-105 386.7 326 60.7
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.2e-105 386.3 328 60.4
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.2e-105 386.3 302 62.3
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.9e-105 386.0 321 61.7
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 5.0e-105 385.2 321 61.7
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 5.0e-105 385.2 317 60.6
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.4e-104 383.6 314 61.1
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.9e-104 383.3 317 61.5
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 6.1e-103 378.3 316 58.5
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 6.1e-103 378.3 317 60.3
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.0e-102 377.5 317 57.1
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.0e-102 377.5 302 61.6
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.8e-102 376.7 312 59.9
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 3.9e-102 375.6 304 61.2
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 3.9e-102 375.6 318 57.5
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 4.4e-101 372.1 316 59.8
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 4.4e-101 372.1 322 58.7
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 9.7e-101 370.9 318 61.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 9.7e-101 370.9 318 61.0
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 9.7e-101 370.9 318 58.8
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.3e-100 370.5 321 57.9
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.3e-100 370.5 319 59.6
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.3e-100 370.5 319 59.6
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 2.8e-100 369.4 291 61.5
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.8e-100 368.6 315 60.3
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 6.3e-100 368.2 321 60.1
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 1.1e-99 367.5 234 73.1
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.1e-99 365.9 349 53.6
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 3.1e-99 365.9 349 53.6
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 4.1e-99 365.5 365 52.6
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.1e-99 365.5 319 60.5
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 9.1e-99 364.4 355 53.5
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 9.1e-99 364.4 356 53.9
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 1.2e-98 364.0 313 59.1
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.6e-98 363.6 319 60.2
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 1.6e-98 363.6 373 51.5
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 2.6e-98 362.8 319 59.6
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 4.5e-98 362.1 356 52.8
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 5.9e-98 361.7 319 58.9
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.0e-97 360.9 338 55.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.2e-97 359.8 322 58.4
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 2.2e-97 359.8 316 56.3
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 3.8e-97 359.0 320 58.1
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 3.8e-97 359.0 352 53.1
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 5.0e-97 358.6 324 56.5
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 6.5e-97 358.2 280 61.4
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 8.5e-97 357.8 343 53.4
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 8.5e-97 357.8 314 58.0
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 8.5e-97 357.8 264 65.5
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 1.1e-96 357.5 314 57.6
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 1.5e-96 357.1 302 59.6
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.5e-96 356.3 321 56.1
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 3.2e-96 355.9 319 58.3
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 3.2e-96 355.9 358 53.1
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 1.6e-95 353.6 313 57.5
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 3.6e-95 352.4 267 65.2
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 6.1e-95 351.7 317 58.0
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 1.0e-94 350.9 313 55.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 5.2e-94 348.6 319 57.1
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 4.4e-93 345.5 364 53.3
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 4.4e-93 345.5 228 77.2
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.3e-92 344.0 208 77.4
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 6.3e-92 341.7 310 56.8
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 4.1e-91 339.0 346 52.3
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 4.1e-91 339.0 271 60.5
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.5e-90 335.5 315 53.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.1e-88 330.9 314 52.9
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 4.2e-88 328.9 361 51.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.7e-87 325.5 295 57.6
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 1.5e-85 320.5 233 64.4
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 8.3e-84 314.7 211 69.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-80 303.5 326 53.7
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 9.4e-80 301.2 209 70.3
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-79 300.8 325 53.2
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.6e-74 283.9 327 48.9
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.5e-61 240.7 291 47.4
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 3.7e-60 236.1 235 52.8
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 3.7e-60 236.1 235 52.8
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 5.4e-59 232.3 204 53.9
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 9.2e-59 231.5 336 40.5
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 2.0e-58 230.3 362 37.6
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 3.0e-57 226.5 237 51.1
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.5e-53 214.2 240 49.2
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 6.4e-52 208.8 205 55.6
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 3.2e-51 206.5 192 56.2
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 5.4e-51 205.7 228 43.9
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 8.6e-49 198.4 219 51.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 1.8e-46 190.7 319 37.0
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 8.9e-46 188.3 164 57.3
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 7.6e-45 185.3 392 36.2
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.2e-42 177.9 252 46.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 7.8e-42 175.3 241 36.9
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.0e-41 174.9 200 44.0
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 3.9e-41 172.9 314 36.9
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 3.3e-40 169.9 195 50.8
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 6.9e-38 162.2 202 46.5
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 4.2e-35 152.9 110 61.8
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.6e-34 151.0 93 77.4
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 2.3e-33 147.1 109 59.6
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 2.1e-26 124.0 275 31.3
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 4.8e-23 112.8 111 54.1
MCO07G491 Micromonas commoda HOM05D005396 ORTHO05D006400 2.1e-18 97.4 195 29.7
PRCOL_00005415 Prasinoderma coloniale HOM05D005396 ORTHO05D006400 1.4e-14 84.7 195 30.3
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 3.9e-09 66.6 45 62.2
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.4e-06 58.2 77 39.0


User provided reference genes

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