Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 0.0e+00 1169.1 598 100.0
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 5.1e-281 970.7 595 85.0
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 1.6e-266 922.5 600 82.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.0e-252 876.7 601 77.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 1.7e-252 875.9 600 76.8
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 7.2e-251 870.5 604 75.3
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.1e-250 869.0 620 75.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.8e-250 868.6 604 75.7
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.8e-250 868.6 601 76.2
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 6.8e-249 864.0 605 75.7
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.5e-248 862.8 581 78.0
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.9e-247 858.6 582 77.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 2.9e-247 858.6 610 74.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.1e-246 856.7 546 79.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 2.4e-246 855.5 601 76.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 9.2e-246 853.6 604 75.5
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 9.2e-246 853.6 608 76.2
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.6e-244 847.4 600 76.2
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.1e-243 846.7 601 73.5
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.9e-243 845.9 603 73.5
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 5.6e-243 844.3 577 75.9
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.6e-242 841.6 506 84.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 6.2e-242 840.9 576 76.6
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.4e-241 839.7 601 75.2
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 3.1e-241 838.6 583 76.7
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 4.0e-241 838.2 617 73.6
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-240 836.3 599 75.3
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-240 836.3 599 75.3
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 4.4e-240 834.7 605 73.9
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.3e-239 833.2 572 76.7
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 4.9e-239 831.2 629 70.1
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.4e-238 828.9 540 79.1
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 2.0e-237 825.9 604 73.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.0e-236 822.0 598 73.6
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 5.0e-236 821.2 594 75.1
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 3.3e-235 818.5 576 76.7
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 3.6e-234 815.1 505 82.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.7e-234 814.7 611 72.7
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.4e-233 813.1 607 72.2
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 8.9e-233 810.4 627 71.8
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.2e-232 810.1 601 72.2
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.4e-232 808.5 506 80.4
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 3.4e-232 808.5 602 72.8
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.3e-231 806.6 608 72.2
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.9e-231 804.7 503 81.3
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.1e-230 801.6 526 77.4
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 1.2e-229 800.0 599 71.8
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.6e-229 799.7 638 69.3
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 2.7e-229 798.9 535 78.5
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 4.6e-229 798.1 584 72.3
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 7.8e-229 797.3 584 70.9
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.0e-228 797.0 607 70.8
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.6e-226 789.6 596 73.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 6.2e-226 787.7 604 70.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 6.2e-226 787.7 604 70.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.2e-226 787.7 613 69.8
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 4.0e-225 785.0 605 69.8
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 5.2e-225 784.6 606 69.3
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 5.2e-225 784.6 605 69.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 8.9e-225 783.9 604 69.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.5e-224 783.1 602 71.1
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.6e-224 782.3 546 75.1
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 5.8e-224 781.2 614 69.2
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.3e-223 780.0 545 73.9
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.3e-223 780.0 602 70.8
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 2.2e-223 779.2 604 69.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.7e-223 778.5 601 69.4
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.9e-222 776.2 611 68.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.4e-222 775.8 577 70.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.2e-221 773.5 577 70.9
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.2e-221 773.5 503 77.9
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 3.0e-220 768.8 604 69.9
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-219 766.9 509 77.4
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.5e-219 766.5 579 69.8
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.1e-218 762.7 606 70.3
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.1e-217 760.4 603 71.0
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.4e-217 759.2 506 76.7
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 4.0e-217 758.4 529 75.6
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 5.2e-217 758.1 506 76.3
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.2e-216 756.9 582 71.1
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.7e-215 753.1 586 67.7
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.4e-215 751.1 597 70.5
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 8.4e-215 750.7 596 68.3
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.9e-214 749.6 600 66.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 594 69.4
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 9.3e-214 747.3 583 70.7
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.0e-212 743.8 533 71.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 1.3e-212 743.4 682 62.0
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 1.6e-205 719.9 614 64.7
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.3e-204 716.1 576 67.4
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 5.1e-204 714.9 460 80.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 2.5e-203 712.6 601 66.7
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.1e-201 707.2 663 61.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.4e-199 697.6 600 63.7
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.1e-197 693.0 662 60.4
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 2.3e-196 689.5 587 65.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 1.1e-193 680.6 582 64.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.6e-192 676.0 459 74.7
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 9.3e-190 667.5 487 74.1
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 4.1e-185 652.1 403 87.8
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.5e-184 650.2 597 59.6
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 8.4e-183 644.4 506 67.8
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.5e-176 623.6 403 79.7
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 4.2e-174 615.5 439 72.9
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.3e-171 605.5 523 63.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.0e-167 594.3 556 60.4
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.1e-161 572.4 540 56.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 7.2e-142 508.4 345 76.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.4e-137 493.4 513 53.8
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.3e-134 483.0 457 58.6
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 3.6e-133 479.6 508 55.7
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.0e-132 478.0 441 55.3
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.2e-130 470.3 425 63.5
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.7e-130 469.5 502 52.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.0e-125 451.8 471 55.0
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 2.3e-124 450.3 457 51.0
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 4.0e-124 449.5 494 48.4
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.0e-116 422.9 266 82.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 6.0e-104 382.5 488 44.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.3e-89 332.0 282 58.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.1e-86 325.1 204 77.9
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.6e-77 294.7 225 67.6
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.7e-74 284.6 173 83.2
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 5.5e-73 279.6 224 69.2
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.5e-72 276.9 202 65.8
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 5.3e-68 263.1 277 53.8
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.2e-66 257.7 178 71.3
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.2e-64 251.9 391 40.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.6e-64 250.0 278 52.9
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.1e-62 245.4 262 48.5
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-57 228.8 137 80.3
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 2.0e-54 218.0 291 44.0
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.5e-50 202.6 177 64.4
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.4e-47 195.3 113 84.1
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.7e-46 189.9 128 71.9
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.2e-40 172.2 272 41.2
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.2e-37 159.5 122 67.2
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.8e-36 158.3 125 64.0
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 8.5e-34 149.4 106 70.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 3.0e-31 141.0 269 35.7
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.4e-30 137.1 95 75.8
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 3.8e-26 124.0 283 34.3
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.9e-25 121.7 123 51.2
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 6.1e-24 116.7 112 54.5
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.1e-24 116.7 83 65.1
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.6e-22 111.3 228 36.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.4e-20 105.5 88 61.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.6e-19 102.1 56 92.9
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.9e-18 97.8 57 91.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 9.5e-17 92.8 71 66.2
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.1e-16 90.1 91 48.4
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 1.4e-15 89.0 71 63.4
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.2e-15 87.0 91 47.3
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 6.8e-15 86.7 55 78.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 7.0e-12 76.6 245 27.8
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.6e-11 75.5 59 61.0
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.6e-08 65.5 40 82.5
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 6.2e-08 63.5 36 83.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.1e-07 62.8 109 35.8
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 2.3e-07 61.6 284 23.2


User provided reference genes

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