Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 3554.6 1936 100.0
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 3375.5 1985 93.5
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2827.0 1977 79.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2810.8 1984 78.8
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2745.3 1905 80.3
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2580.4 1903 75.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2548.9 1905 75.7
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2518.8 1902 73.7
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2503.8 1835 74.7
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2501.5 1875 75.7
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2498.4 1920 72.9
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2487.6 1830 74.9
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2481.8 1902 73.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2468.0 1907 73.3
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2465.6 1768 75.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2447.2 1838 74.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2446.0 1993 70.2
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2445.2 1903 73.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2425.6 1906 72.7
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2423.3 1811 73.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2416.0 1901 71.1
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2416.0 1901 71.1
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2414.4 1907 71.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2411.3 1904 72.5
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2409.0 1907 72.8
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2408.6 1807 73.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2406.7 1905 71.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2404.0 1915 70.9
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2401.3 1904 71.4
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2397.1 1906 71.2
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2395.9 1751 74.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2394.0 1902 71.4
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2392.1 1906 71.6
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2389.8 1902 71.1
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2385.1 1787 72.1
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2380.1 1906 70.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2367.8 1996 68.2
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2353.9 1934 69.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2342.4 1901 69.2
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2326.6 1908 68.9
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2321.2 1881 68.8
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2312.3 1866 68.6
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2308.1 1786 73.0
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2307.3 1789 69.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2305.4 1905 69.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2299.6 1790 70.4
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2295.0 1867 68.1
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2294.2 1887 69.4
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2280.0 1879 69.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2258.8 1912 67.9
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2235.3 1791 69.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2234.9 1889 67.4
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2230.3 1902 68.1
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2230.3 1884 66.9
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2227.6 1905 67.7
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2226.1 1878 67.4
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2226.1 1890 67.3
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2224.9 1907 67.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2223.7 1884 67.3
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2223.4 1890 67.2
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2215.7 1889 67.4
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2209.9 1787 68.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2209.1 1888 68.0
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2204.5 1792 68.0
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2202.6 1890 66.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2191.8 1981 65.1
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2169.8 1887 66.5
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2160.2 1808 66.7
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2152.1 1855 64.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2139.4 1823 66.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2128.6 1882 65.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2109.3 1707 68.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2105.9 1780 66.0
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2087.4 1996 62.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2080.8 1880 64.5
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2060.8 1882 64.1
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2034.6 1836 63.0
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2025.0 1909 61.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2016.9 1802 63.4
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2015.7 1779 63.4
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2012.7 1800 63.6
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1998.8 1875 62.7
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1979.5 1847 61.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1963.0 1891 61.9
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1917.9 1700 64.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1911.0 1792 60.5
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1886.3 1805 59.9
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1879.8 1887 58.7
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1879.0 1871 57.2
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1870.9 1844 57.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1870.5 1844 57.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1869.0 1843 57.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1864.4 1845 57.8
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1840 57.2
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1857.4 1845 57.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1842.0 1843 57.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1840.1 1840 57.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1833.5 1841 56.8
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1833.2 1853 56.7
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1833.2 1853 56.7
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1853 56.6
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1832.4 1854 56.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1813.1 1913 57.0
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1807.7 1845 56.6
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1691.0 1941 54.5
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1656.3 1807 53.5
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1636.7 1243 71.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1593.9 1807 52.1
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1593.2 1200 73.5
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1573.5 1450 63.7
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1527.3 1241 69.4
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1502.3 1891 51.6
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1477.6 1371 59.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1473.0 1918 48.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1470.7 1866 49.0
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1470.7 1866 49.0
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1468.8 1882 49.0
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1396.7 1767 50.3
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1340.5 1467 55.2
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1314.3 1346 59.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1292.7 1086 70.1
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1238.0 889 75.1
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1220.3 1749 45.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1118.2 1040 64.6
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 7.0e-303 1045.0 851 68.7
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.1e-283 980.3 829 68.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 5.2e-274 949.1 1410 46.5
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.3e-272 944.5 1832 38.8
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 7.3e-260 902.1 825 62.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.1e-246 857.4 1799 35.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 5.1e-245 852.8 856 56.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 9.4e-199 699.1 722 55.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-196 690.6 616 66.2
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.3e-187 659.8 659 56.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 2.3e-181 641.3 500 67.4
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.4e-178 632.1 654 54.1
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.6e-169 602.1 624 56.4
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.4e-156 557.4 448 72.3
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.4e-138 497.3 527 59.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.6e-129 467.6 530 57.5
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 4.7e-126 457.6 428 60.0
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 8.9e-125 453.4 410 62.2
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 4.4e-116 424.5 1272 29.2
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 5.7e-87 327.8 871 33.9
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.7e-79 301.2 660 33.9
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.7e-78 299.7 2071 22.9
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 8.5e-75 287.3 465 39.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.7e-73 282.3 424 45.0
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.4e-69 270.0 239 65.7
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 5.3e-61 241.5 199 68.8
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 4.5e-60 238.4 162 74.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.9e-60 238.0 368 42.4
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 3.8e-59 235.3 271 50.6
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 5.9e-52 211.5 233 57.9
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.0e-40 172.6 232 50.9
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.7e-38 165.6 188 69.7
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 2.9e-22 112.8 165 44.8
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 5.6e-18 98.6 100 55.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 6.8e-16 91.7 63 71.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 1.0e-11 77.8 60 66.7
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.3e-10 72.8 52 63.5
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.1e-09 68.2 33 84.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.0e-07 63.5 52 57.7


User provided reference genes

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