Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012819 Carpinus fangiana HOM05D003404 ORTHO05D004052 7.7e-52 206.8 102 100.0
Cfa005443 Carpinus fangiana HOM05D003404 ORTHO05D004052 5.2e-40 167.5 85 97.6
Atru.chr8.1282 Acer truncatum HOM05D003404 ORTHO05D004052 3.6e-25 118.2 67 91.0
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 3.0e-24 115.2 62 95.2
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 4.0e-24 114.8 64 90.6
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 5.2e-24 114.4 65 89.2
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 8.9e-24 113.6 62 91.9
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 8.9e-24 113.6 62 93.5
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.2e-23 113.2 62 93.5
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 1.2e-23 113.2 62 93.5
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.2e-23 113.2 62 90.3
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 1.2e-23 113.2 62 93.5
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.5e-23 112.8 62 91.9
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 90.3
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 90.3
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 90.3
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 91.9
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 91.9
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 91.9
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 2.0e-23 112.5 62 91.9
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 2.6e-23 112.1 65 86.2
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 2.6e-23 112.1 62 91.9
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 3.4e-23 111.7 61 93.4
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 3.4e-23 111.7 62 87.1
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 3.4e-23 111.7 62 88.7
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 3.4e-23 111.7 62 88.7
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 4.4e-23 111.3 65 87.7
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 5.7e-23 110.9 65 86.2
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 5.7e-23 110.9 62 91.9
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 7.5e-23 110.5 65 84.6
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 7.5e-23 110.5 62 90.3
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 7.5e-23 110.5 61 91.8
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 7.5e-23 110.5 62 85.5
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 9.8e-23 110.2 61 91.8
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 9.8e-23 110.2 61 88.5
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 9.8e-23 110.2 61 88.5
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 1.3e-22 109.8 62 90.3
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.7e-22 109.4 62 88.7
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.7e-22 109.4 62 85.5
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.7e-22 109.4 62 85.5
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 2.2e-22 109.0 61 90.2
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 2.2e-22 109.0 73 74.0
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 2.2e-22 109.0 61 90.2
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 2.2e-22 109.0 61 88.5
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 2.2e-22 109.0 62 90.3
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 2.2e-22 109.0 62 90.3
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 2.2e-22 109.0 62 90.3
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 2.2e-22 109.0 62 88.7
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 2.2e-22 109.0 62 90.3
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.8e-22 108.6 61 86.9
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 2.8e-22 108.6 77 76.6
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 2.8e-22 108.6 62 88.7
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 2.8e-22 108.6 61 86.9
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 2.8e-22 108.6 61 86.9
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 3.7e-22 108.2 62 87.1
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 3.7e-22 108.2 72 79.2
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 3.7e-22 108.2 61 90.2
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 4.9e-22 107.8 61 91.8
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 4.9e-22 107.8 65 84.6
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 6.3e-22 107.5 65 83.1
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 6.3e-22 107.5 62 87.1
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 8.3e-22 107.1 62 88.7
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 8.3e-22 107.1 62 87.1
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 83.9
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 87.1
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 87.1
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 1.1e-21 106.7 62 87.1
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 1.4e-21 106.3 62 82.3
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-21 106.3 64 82.8
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.4e-21 106.3 64 82.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.4e-21 106.3 62 90.3
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-21 105.9 62 88.7
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 1.8e-21 105.9 65 80.0
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 1.8e-21 105.9 65 80.0
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 2.4e-21 105.5 62 82.3
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 4.1e-21 104.8 62 83.9
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 4.1e-21 104.8 61 90.2
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 4.1e-21 104.8 61 90.2
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 90.2
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 83.6
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 83.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 83.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 83.6
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 83.6
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 7.0e-21 104.0 61 85.2
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 9.2e-21 103.6 61 82.0
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 2.0e-20 102.4 61 83.6
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 4.5e-20 101.3 61 80.3
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 5.9e-20 100.9 60 86.7
Atru.chr11.445 Acer truncatum HOM05D000107 ORTHO05D000062 5.0e-19 97.8 62 85.5
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 6.6e-19 97.4 60 76.7
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 8.6e-19 97.1 62 77.4
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 2.5e-18 95.5 62 79.0
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 4.3e-18 94.7 62 71.0
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 9.5e-18 93.6 55 83.6
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 1.6e-17 92.8 62 67.7
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 8.0e-17 90.5 62 69.4
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.0e-16 90.1 71 62.0
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 1.4e-16 89.7 54 81.5
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 1.4e-16 89.7 54 81.5
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 2.0e-15 85.9 68 66.2
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 1.8e-13 79.3 62 61.3
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 1.1e-10 70.1 62 62.9
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 2.8e-09 65.5 58 60.3
TPR.G18134 Trifolium pratense HOM05D003404 ORTHO05D004052 2.3e-08 62.4 59 67.8
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 5.2e-08 61.2 34 91.2
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 1.7e-06 56.2 35 80.0
Prupe.6G174400 Prunus persica HOM05D003404 ORTHO05D004052 3.7e-06 55.1 51 62.7
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 8.3e-06 53.9 53 49.1


User provided reference genes

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