Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.8e-157 559.3 304 100.0
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 3.4e-156 555.1 304 96.1
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 6.9e-149 530.8 304 94.7
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 1.4e-146 523.1 303 92.7
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.1e-141 506.9 303 89.8
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 1.6e-137 493.0 308 86.4
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 3.6e-137 491.9 308 86.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-136 489.6 308 85.7
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.8e-136 489.6 308 85.7
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.0e-135 486.1 308 85.4
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 5.7e-135 484.6 304 82.9
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 1.3e-134 483.4 307 87.6
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 2.2e-134 482.6 308 83.8
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 4.8e-134 481.5 304 84.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-133 479.9 307 87.0
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.4e-133 479.9 307 87.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 4.1e-133 478.4 306 84.6
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 7.0e-133 477.6 304 84.5
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 9.1e-133 477.2 308 84.4
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 9.1e-133 477.2 307 86.0
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 1.2e-132 476.9 306 82.4
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 2.6e-132 475.7 306 83.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 7.7e-132 474.2 304 82.9
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 1.3e-131 473.4 308 83.8
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.7e-131 473.0 304 83.9
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.9e-131 472.2 305 86.6
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.9e-131 472.2 307 85.7
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 3.8e-131 471.9 307 83.4
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 1.5e-130 469.9 307 85.7
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 4.2e-130 468.4 306 81.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.2e-130 468.4 304 85.2
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 1.6e-129 466.5 307 82.7
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 83.0
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 83.0
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.6e-129 466.5 306 83.0
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 2.1e-129 466.1 306 82.0
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.7e-129 465.7 307 79.8
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 3.6e-129 465.3 308 81.2
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 4.7e-129 464.9 307 82.7
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 4.7e-129 464.9 307 79.5
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 8.0e-129 464.2 304 82.2
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 1.4e-128 463.4 307 83.4
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 2.3e-128 462.6 307 79.2
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 306 82.0
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 2.3e-128 462.6 306 80.4
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 5.2e-128 461.5 306 80.4
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 6.7e-128 461.1 304 80.3
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 8.8e-128 460.7 305 83.0
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 8.8e-128 460.7 304 81.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 1.5e-127 459.9 307 80.5
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 2.6e-127 459.1 306 77.5
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.6e-127 459.1 304 80.3
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 4.4e-127 458.4 298 82.2
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.3e-126 456.8 308 83.8
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 1.7e-126 456.4 306 80.4
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.7e-126 456.4 303 81.5
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.2e-126 456.1 307 79.8
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 3.7e-126 455.3 307 78.5
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 3.1e-125 452.2 307 78.2
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 5.3e-125 451.4 306 77.8
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 5.3e-125 451.4 307 77.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 7.0e-125 451.1 304 81.2
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 7.0e-125 451.1 306 76.5
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 80.1
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 80.1
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 79.4
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.1e-125 450.7 306 77.5
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.2e-124 450.3 305 80.0
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 78.9
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.0e-124 449.5 304 79.3
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 5.9e-124 448.0 306 80.4
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 7.7e-124 447.6 307 75.9
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 1.0e-123 447.2 306 79.7
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.7e-123 446.4 304 78.0
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 75.7
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 2.9e-123 445.7 313 77.0
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 2.9e-123 445.7 305 77.0
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 79.9
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 5.0e-123 444.9 304 76.0
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 8.5e-123 444.1 305 76.7
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 8.5e-123 444.1 304 78.9
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.2e-122 442.2 304 77.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 9.4e-122 440.7 304 77.6
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 9.4e-122 440.7 306 75.8
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.6e-121 439.9 308 79.2
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 2.7e-121 439.1 298 77.5
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 1.4e-120 436.8 312 75.6
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.4e-120 436.8 307 80.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.4e-120 436.8 304 78.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 3.0e-120 435.6 288 79.5
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.2e-120 434.9 304 76.3
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 8.8e-120 434.1 308 79.5
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 2.6e-119 432.6 307 79.5
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 1.3e-118 430.3 304 77.0
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 2.2e-118 429.5 307 77.2
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 2.8e-118 429.1 304 76.3
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 8.3e-118 427.6 304 75.0
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 8.3e-118 427.6 307 76.2
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.4e-117 426.8 304 77.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.4e-117 426.8 304 77.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.4e-117 426.8 304 77.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 2.4e-117 426.0 306 75.2
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 3.1e-117 425.6 308 76.9
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.3e-117 424.9 308 77.3
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.6e-116 423.3 308 76.9
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 3.5e-116 422.2 304 75.7
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 2.9e-115 419.1 313 74.8
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 1.5e-114 416.8 308 70.5
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.2e-113 413.7 301 76.1
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-113 413.7 304 75.7
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 9.1e-109 397.5 285 79.6
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.6e-108 396.7 304 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 2.3e-107 392.9 303 70.3
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 4.0e-104 382.1 304 72.0
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 9.2e-101 370.9 293 70.6
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 2.0e-100 369.8 307 65.1
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 2.9e-94 349.4 306 62.7
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 6.6e-91 338.2 323 57.6
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 4.7e-89 332.0 195 81.5
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.8e-87 325.1 254 72.8
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.7e-84 316.2 300 59.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.5e-82 310.5 193 82.4
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.3e-82 308.9 305 56.1
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-80 304.3 254 66.9
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.6e-76 290.4 304 58.2
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 4.2e-69 265.8 303 51.2
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 5.1e-67 258.8 134 94.0
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 4.4e-63 245.7 272 58.1
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 4.9e-62 242.3 202 68.3
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 1.0e-59 234.6 196 71.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 1.9e-58 230.3 205 67.3
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.7e-51 205.3 166 75.9
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 1.5e-50 204.1 307 45.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 3.3e-50 203.0 195 64.6
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 5.6e-50 202.2 296 45.9
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-47 194.5 195 61.0
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 5.1e-43 179.1 234 49.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.8e-41 173.3 199 49.2
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.5e-39 167.5 111 77.5
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 1.4e-37 161.0 104 75.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 5.1e-35 152.5 179 53.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 5.9e-31 139.0 262 45.4
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.2e-30 137.1 102 66.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 5.0e-22 109.4 77 70.1
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.9e-21 107.5 304 33.9
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 2.5e-21 107.1 77 67.5
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 4.2e-21 106.3 155 51.6
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 5.5e-21 105.9 61 80.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 2.7e-20 103.6 304 33.2
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.4e-19 101.3 118 63.6
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 5.1e-19 99.4 71 69.0
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.4e-16 90.5 120 57.5
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 6.5e-14 82.4 66 68.2
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 2.1e-12 77.4 101 55.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.4e-11 74.7 52 80.8
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 4.0e-11 73.2 146 43.8


User provided reference genes

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