Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.1e-161 573.2 279 100.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.0e-74 282.7 218 69.7
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 3.0e-74 282.7 157 90.4
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.8e-64 249.6 157 79.6
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.8e-58 228.0 154 75.3
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 6.5e-53 211.8 144 75.0
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 8.8e-50 201.4 158 65.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.7e-49 198.7 156 66.0
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.7e-49 198.7 159 65.4
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 9.8e-49 198.0 173 64.2
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.3e-48 197.6 108 84.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.3e-48 197.6 108 84.3
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-48 197.6 169 65.7
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.7e-48 197.2 169 66.9
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.2e-48 196.8 160 65.6
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.2e-48 196.8 163 66.3
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.2e-48 196.8 163 66.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 2.8e-48 196.4 149 69.8
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.8e-48 196.4 156 66.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.8e-48 196.4 155 65.2
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 2.8e-48 196.4 156 69.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 8.3e-48 194.9 107 82.2
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 8.3e-48 194.9 166 61.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 8.3e-48 194.9 157 65.0
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 8.3e-48 194.9 110 83.6
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.1e-47 194.5 152 68.4
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 1.4e-47 194.1 153 66.7
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.4e-47 194.1 156 66.0
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.4e-47 194.1 146 67.1
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.8e-47 193.7 143 69.9
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.8e-47 193.7 149 64.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 2.4e-47 193.4 167 61.7
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.4e-47 193.4 164 63.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.4e-47 193.4 153 67.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 2.4e-47 193.4 161 64.0
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 2.4e-47 193.4 162 64.2
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 4.1e-47 192.6 162 64.8
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.4e-47 192.2 151 65.6
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 7.0e-47 191.8 101 87.1
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.0e-47 191.8 154 64.3
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 7.0e-47 191.8 162 63.0
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 7.0e-47 191.8 159 62.3
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 9.1e-47 191.4 152 66.4
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 1.2e-46 191.0 151 64.9
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.6e-46 190.7 147 63.9
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.6e-46 190.7 160 63.8
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.6e-46 190.7 157 64.3
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.0e-46 190.3 145 64.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.7e-46 189.9 149 66.4
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 2.7e-46 189.9 128 74.2
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 3.5e-46 189.5 161 62.7
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 3.5e-46 189.5 148 66.9
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.5e-46 189.1 159 66.0
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.5e-46 189.1 161 65.2
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.5e-46 189.1 130 69.2
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 4.5e-46 189.1 156 62.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 4.5e-46 189.1 159 61.0
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 4.5e-46 189.1 156 62.8
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 5.9e-46 188.7 159 62.9
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 5.9e-46 188.7 169 64.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 7.7e-46 188.3 148 64.9
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 7.7e-46 188.3 101 85.1
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 7.7e-46 188.3 101 85.1
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.0e-45 188.0 128 73.4
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.0e-45 188.0 132 71.2
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 1.0e-45 188.0 153 64.1
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.7e-45 187.2 163 61.3
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.7e-45 187.2 160 63.1
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.7e-45 187.2 149 60.4
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.3e-45 186.8 133 65.4
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.3e-45 186.8 148 64.9
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 2.9e-45 186.4 156 62.2
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.9e-45 186.4 147 66.0
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 3.8e-45 186.0 140 67.1
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 3.8e-45 186.0 162 63.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.8e-45 186.0 161 60.9
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 3.8e-45 186.0 152 64.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 5.0e-45 185.7 152 63.2
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 5.0e-45 185.7 163 62.0
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.0e-45 185.7 109 80.7
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 6.5e-45 185.3 144 63.2
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 6.5e-45 185.3 150 62.7
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 8.6e-45 184.9 140 66.4
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 8.6e-45 184.9 123 74.0
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.1e-44 184.5 127 71.7
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.1e-44 184.5 159 61.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 1.5e-44 184.1 144 63.9
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.5e-44 184.1 140 66.4
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.5e-44 184.1 146 63.0
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 1.9e-44 183.7 149 64.4
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.5e-44 183.3 166 61.4
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 4.2e-44 182.6 143 66.4
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 4.2e-44 182.6 155 61.9
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 4.2e-44 182.6 143 66.4
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 4.2e-44 182.6 166 62.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 9.5e-44 181.4 157 61.1
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-43 181.0 147 62.6
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.6e-43 180.6 128 68.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 2.1e-43 180.3 121 75.2
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.6e-43 179.5 106 78.3
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 3.6e-43 179.5 149 63.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 6.1e-43 178.7 143 64.3
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 6.1e-43 178.7 143 64.3
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 6.1e-43 178.7 143 64.3
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.0e-42 177.9 90 87.8
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-42 177.6 151 61.6
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 3.0e-42 176.4 160 58.8
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 4.0e-42 176.0 157 59.9
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 5.2e-42 175.6 93 81.7
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 6.8e-42 175.3 97 79.4
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.5e-41 174.1 186 52.2
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.6e-41 173.3 150 62.0
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 4.4e-41 172.6 126 63.5
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 7.5e-41 171.8 111 72.1
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 9.8e-41 171.4 91 82.4
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.3e-40 171.0 87 85.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.7e-40 170.6 104 74.0
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 2.2e-40 170.2 100 79.0
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 8.3e-40 168.3 139 64.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 7.8e-38 161.8 112 65.2
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 6.6e-37 158.7 94 75.5
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 2.8e-35 153.3 161 55.3
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-33 147.9 130 62.3
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.5e-33 147.5 131 61.1
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.2e-32 143.7 123 60.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.9e-28 130.6 161 50.3
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.9e-28 130.6 165 48.5
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 2.8e-19 100.1 49 89.8
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 6.4e-16 89.0 87 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.9e-15 87.4 73 57.5
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.3e-13 81.3 115 49.6
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 4.4e-09 66.2 47 63.8
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 3.8e-08 63.2 83 45.8
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 6.4e-08 62.4 38 71.1
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 8.4e-08 62.0 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 8.4e-08 62.0 28 89.3
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 1.1e-07 61.6 47 66.0


User provided reference genes

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