Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.5e-56 221.9 111 100.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.2e-35 151.4 82 95.1
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.4e-35 151.0 81 95.1
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 9.3e-35 150.2 85 88.2
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 9.3e-35 150.2 82 93.9
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.6e-34 147.9 82 90.2
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 6.0e-34 147.5 82 91.5
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 7.9e-34 147.1 82 91.5
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.8e-33 146.0 82 90.2
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.8e-33 146.0 82 90.2
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 3.0e-33 145.2 82 87.8
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.0e-33 145.2 82 87.8
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 3.9e-33 144.8 82 89.0
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 5.1e-33 144.4 80 90.0
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.1e-33 144.4 78 93.6
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 6.7e-33 144.1 78 92.3
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 6.7e-33 144.1 80 90.0
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.7e-33 144.1 78 92.3
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.7e-33 144.1 78 92.3
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 6.7e-33 144.1 78 92.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 6.7e-33 144.1 82 87.8
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 6.7e-33 144.1 82 89.0
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 6.7e-33 144.1 82 87.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 8.7e-33 143.7 82 86.6
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.1e-32 143.3 82 89.0
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.5e-32 142.9 82 89.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 1.5e-32 142.9 78 89.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 1.5e-32 142.9 82 86.6
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.5e-32 142.9 82 87.8
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.5e-32 142.9 82 87.8
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.5e-32 142.9 82 86.6
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.5e-32 142.9 78 91.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 1.5e-32 142.9 78 91.0
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.5e-32 142.9 78 91.0
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.9e-32 142.5 82 86.6
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.5e-32 142.1 82 87.8
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.5e-32 142.1 82 87.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.5e-32 142.1 82 87.8
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 2.5e-32 142.1 78 89.7
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 3.3e-32 141.7 82 86.6
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.3e-32 141.7 82 86.6
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 4.3e-32 141.4 82 87.8
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 4.3e-32 141.4 82 84.1
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 4.3e-32 141.4 82 85.4
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.3e-32 141.4 81 87.7
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 4.3e-32 141.4 82 85.4
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 4.3e-32 141.4 78 89.7
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 5.6e-32 141.0 78 89.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.6e-32 141.0 78 89.7
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 7.4e-32 140.6 78 88.5
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 7.4e-32 140.6 78 88.5
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 7.4e-32 140.6 78 88.5
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 7.4e-32 140.6 82 85.4
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 7.4e-32 140.6 82 85.4
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 7.4e-32 140.6 81 87.7
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 7.4e-32 140.6 82 85.4
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 9.6e-32 140.2 100 73.0
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 9.6e-32 140.2 82 85.4
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 9.6e-32 140.2 82 86.6
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 9.6e-32 140.2 82 86.6
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.6e-32 140.2 82 85.4
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 9.6e-32 140.2 82 84.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.3e-31 139.8 82 84.1
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 1.3e-31 139.8 82 84.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-31 139.8 82 84.1
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-31 139.8 82 84.1
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.6e-31 139.4 82 81.7
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.6e-31 139.4 78 87.2
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.6e-31 139.4 78 87.2
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.6e-31 139.4 80 85.0
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.1e-31 139.0 82 86.6
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.1e-31 139.0 82 85.4
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.1e-31 139.0 82 84.1
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.1e-31 139.0 82 85.4
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 2.1e-31 139.0 82 82.9
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.8e-31 138.7 82 82.9
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 2.8e-31 138.7 82 85.4
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 84.1
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 82.9
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.7e-31 138.3 78 88.5
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.7e-31 138.3 82 85.4
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 4.8e-31 137.9 82 81.7
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 4.8e-31 137.9 82 82.9
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 4.8e-31 137.9 82 84.1
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 4.8e-31 137.9 78 88.5
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 6.2e-31 137.5 82 84.1
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 8.1e-31 137.1 82 81.7
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 8.1e-31 137.1 82 81.7
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.1e-30 136.7 82 82.9
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.1e-30 136.7 82 82.9
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 1.1e-30 136.7 76 89.5
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.4e-30 136.3 82 84.1
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.8e-30 136.0 78 85.9
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.1e-30 135.2 81 81.5
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 4.0e-30 134.8 81 81.5
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 4.0e-30 134.8 82 81.7
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 4.0e-30 134.8 82 81.7
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 4.0e-30 134.8 75 90.7
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 5.3e-30 134.4 82 81.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 5.3e-30 134.4 78 87.2
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 6.9e-30 134.0 100 69.0
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 6.9e-30 134.0 82 80.5
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.5e-29 132.9 78 82.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.0e-29 132.5 80 83.8
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.3e-28 129.8 79 83.5
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.3e-28 129.8 82 76.8
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 2.9e-28 128.6 78 82.1
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 5.5e-27 124.4 76 78.9
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.5e-27 124.4 71 88.7
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 7.1e-27 124.0 76 77.6
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 9.3e-27 123.6 70 85.7
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 3.5e-26 121.7 99 62.6
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 3.5e-26 121.7 68 89.7
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 1.1e-24 116.7 99 61.6
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 9.6e-24 113.6 80 66.2
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.1e-22 108.6 84 71.4
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 5.3e-22 107.8 77 66.2
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.0e-20 103.6 60 85.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.9e-19 99.4 63 77.8
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.7e-16 87.8 49 83.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.6e-15 86.3 56 76.8
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.6e-15 86.3 78 62.8
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.8e-14 82.8 79 57.0
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 4.5e-13 78.2 53 69.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 4.6e-10 68.2 34 91.2
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 3.3e-08 62.0 34 82.4


User provided reference genes

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