Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.0e-161 573.5 327 100.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.5e-133 479.9 330 85.2
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.2e-132 476.1 327 83.5
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 2.8e-132 475.7 328 83.8
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.0e-130 469.5 328 84.5
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.7e-130 469.2 327 82.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 2.9e-129 465.7 327 82.0
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 6.6e-129 464.5 327 82.0
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.9e-128 463.0 327 83.5
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.9e-128 463.0 327 81.3
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.5e-128 462.6 327 83.8
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 4.2e-128 461.8 330 82.4
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.8e-127 459.1 327 82.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 3.6e-127 458.8 328 82.3
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 8.0e-127 457.6 328 81.1
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 1.0e-126 457.2 337 80.7
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.0e-126 457.2 330 81.5
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.4e-126 456.8 328 81.4
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.8e-126 456.4 330 80.6
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 3.0e-126 455.7 304 90.1
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 4.4e-125 451.8 327 79.8
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 9.8e-125 450.7 330 80.9
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.3e-124 450.3 322 81.1
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.3e-124 450.3 328 80.8
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.2e-124 449.5 327 79.2
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.8e-124 449.1 329 80.5
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.4e-123 446.8 327 81.0
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.8e-123 446.4 328 77.7
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 3.2e-123 445.7 361 75.1
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 9.2e-123 444.1 329 79.9
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.2e-122 443.7 328 78.7
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.5e-122 442.2 327 77.4
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 3.5e-122 442.2 327 77.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 3.5e-122 442.2 332 75.0
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 7.8e-122 441.0 330 79.1
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.7e-121 439.9 336 78.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.7e-121 439.9 327 79.2
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.3e-121 439.5 331 79.2
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.9e-121 439.1 327 76.8
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 6.6e-121 438.0 332 78.3
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.6e-121 438.0 327 79.5
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 6.6e-121 438.0 340 76.5
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.1e-120 437.2 327 79.8
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.5e-120 436.8 327 79.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.5e-120 436.8 328 78.4
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.5e-120 436.8 335 76.4
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.5e-120 436.0 334 78.1
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-120 436.0 327 79.2
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 5.6e-120 434.9 328 77.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 5.6e-120 434.9 331 81.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 5.6e-120 434.9 327 77.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.6e-120 434.9 327 77.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.5e-120 434.1 328 79.9
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.1e-119 433.0 328 78.0
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.6e-119 432.2 332 80.1
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 4.7e-119 431.8 329 76.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 6.1e-119 431.4 334 74.3
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 8.0e-119 431.0 328 77.1
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 8.0e-119 431.0 325 79.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.0e-119 431.0 328 77.4
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.0e-118 430.6 327 77.4
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.4e-118 430.3 330 79.4
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 1.4e-118 430.3 341 76.0
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.8e-118 429.9 327 78.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.3e-118 429.5 322 75.5
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 4.0e-118 428.7 329 77.5
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 4.0e-118 428.7 327 76.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 8.9e-118 427.6 284 82.7
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 8.9e-118 427.6 327 75.2
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 8.9e-118 427.6 328 76.2
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.2e-117 427.2 327 77.1
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.2e-117 427.2 327 76.1
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.0e-117 426.4 331 76.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.6e-117 426.0 329 76.0
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 2.6e-117 426.0 328 76.2
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.4e-117 425.2 329 75.7
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 7.5e-117 424.5 328 76.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 7.5e-117 424.5 326 74.8
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 9.8e-117 424.1 328 77.1
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-116 423.7 328 77.7
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.3e-116 423.7 322 77.3
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.9e-116 422.5 332 76.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.9e-116 422.5 327 74.6
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.9e-116 421.8 324 76.5
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 6.4e-116 421.4 328 76.2
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 6.4e-116 421.4 328 77.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 6.4e-116 421.4 328 75.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 8.3e-116 421.0 328 76.5
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 8.3e-116 421.0 328 76.8
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 8.3e-116 421.0 328 76.8
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-115 420.2 328 76.5
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-115 420.2 328 76.5
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-115 420.2 327 76.5
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 1.4e-115 420.2 380 69.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.4e-115 419.5 296 79.7
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 4.1e-115 418.7 328 75.6
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 4.1e-115 418.7 331 74.6
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 5.4e-115 418.3 329 72.6
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 5.4e-115 418.3 322 76.4
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 9.2e-115 417.5 328 75.6
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.5e-114 415.6 331 75.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 4.6e-114 415.2 325 76.6
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 7.8e-114 414.5 327 75.8
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-113 413.7 325 76.3
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.3e-113 413.7 325 76.3
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.7e-113 413.3 330 76.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.5e-112 410.2 325 76.0
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.9e-112 409.8 331 75.8
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.9e-112 409.8 327 74.9
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 2.5e-112 409.5 330 73.3
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.5e-112 409.5 325 76.0
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.5e-112 409.5 325 76.0
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.3e-112 409.1 326 75.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 5.6e-112 408.3 327 73.4
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 9.5e-112 407.5 327 73.4
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.1e-111 406.4 327 75.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.1e-111 406.4 331 74.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 6.2e-111 404.8 330 74.5
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.0e-111 404.4 326 74.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 8.0e-111 404.4 331 74.0
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.8e-110 403.3 323 75.5
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 6.8e-110 401.4 323 75.5
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 6.8e-110 401.4 318 74.8
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 8.9e-110 401.0 277 83.8
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-109 399.8 259 88.4
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 2.6e-109 399.4 329 75.7
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 5.8e-109 398.3 327 73.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.9e-108 395.2 306 68.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 2.7e-106 389.4 328 73.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.6e-106 388.7 303 76.6
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.0e-105 387.5 308 74.7
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.5e-104 382.9 261 86.2
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.3e-104 382.5 323 71.5
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 7.3e-104 381.3 304 75.7
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 7.3e-104 381.3 302 75.5
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.2e-103 380.6 302 75.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-103 380.2 256 75.8
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-102 377.5 337 71.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 2.4e-99 366.3 331 68.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 7.1e-99 364.8 329 68.1
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 9.2e-99 364.4 273 75.8
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.1e-97 358.6 231 91.3
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.9e-96 356.7 278 74.8
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 8.1e-95 351.3 231 87.4
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-94 350.1 328 59.1
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.0e-94 349.0 227 89.9
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.9e-92 342.8 235 88.1
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.0e-89 332.8 327 65.1
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.0e-89 332.8 327 65.1
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 6.2e-87 325.1 293 66.2
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.4e-86 323.9 267 66.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 9.0e-86 321.2 360 60.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.3e-81 306.6 271 64.2
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 4.0e-78 295.8 246 76.8
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 5.3e-78 295.4 254 61.0
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 9.0e-78 294.7 261 74.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.0e-77 293.5 250 60.4
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.8e-76 289.3 248 64.5
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.1e-75 287.7 255 71.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 3.2e-75 286.2 196 86.7
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 6.5e-60 235.3 265 47.5
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.0e-57 226.5 149 77.9
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 3.7e-55 219.5 303 47.5
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.8e-52 209.5 124 83.9
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 8.5e-52 208.4 125 80.8
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.7e-50 203.4 149 71.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 4.3e-48 196.1 194 69.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-44 184.5 135 72.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.8e-44 183.0 225 62.2
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.7e-34 150.2 140 62.9
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.7e-34 149.4 261 39.5
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 6.1e-34 149.1 88 84.1
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 4.4e-32 142.9 96 72.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.4e-30 137.9 108 75.9
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 2.0e-24 117.5 89 69.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.7e-21 107.1 157 56.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.1e-18 97.4 107 68.2
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 8.0e-18 95.5 158 53.8
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.4e-16 90.1 83 80.7
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 9.8e-16 88.6 122 49.2
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 7.2e-11 72.4 93 46.2
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 7.0e-06 55.8 36 83.3


User provided reference genes

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