Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 3.9e-97 358.2 192 100.0
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 6.9e-70 267.7 240 67.9
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 2.3e-41 172.9 257 45.5
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.9e-36 156.0 120 70.8
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.8e-25 120.2 110 59.1
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 1.8e-25 120.2 270 36.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 6.8e-25 118.2 180 46.7
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.1e-22 110.9 173 43.9
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.1e-22 110.9 194 38.7
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.1e-22 110.9 171 43.3
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.6e-21 107.1 143 44.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.6e-21 107.1 143 44.1
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.6e-21 107.1 176 43.2
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.0e-21 106.7 143 45.5
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 2.0e-21 106.7 144 43.8
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.7e-21 106.3 151 43.7
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.5e-21 105.9 111 50.5
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 7.7e-21 104.8 161 38.5
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 1.0e-20 104.4 172 42.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.7e-20 103.6 164 45.1
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.3e-20 103.2 148 38.5
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.8e-20 102.4 158 43.7
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.8e-20 102.4 158 43.7
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 6.6e-20 101.7 158 41.1
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 6.6e-20 101.7 186 41.4
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.6e-20 101.7 158 43.7
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 8.6e-20 101.3 154 46.1
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 1.1e-19 100.9 150 43.3
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.9e-19 100.1 115 50.4
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 5.5e-19 98.6 155 42.6
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 5.5e-19 98.6 153 46.4
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 7.2e-19 98.2 146 45.9
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.2e-19 98.2 153 44.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.2e-19 98.2 145 44.1
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 1.2e-18 97.4 99 52.5
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 1.6e-18 97.1 199 38.2
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 2.1e-18 96.7 162 38.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 2.1e-18 96.7 162 38.9
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.8e-18 96.3 155 41.9
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 4.7e-18 95.5 153 40.5
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 6.1e-18 95.1 158 43.0
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 8.0e-18 94.7 167 39.5
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 1.0e-17 94.4 147 35.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.0e-17 94.4 172 43.0
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.0e-17 94.4 165 41.2
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.4e-17 94.0 146 36.3
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.4e-17 94.0 162 38.3
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.3e-17 93.2 165 39.4
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 2.3e-17 93.2 154 40.3
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.3e-17 93.2 152 39.5
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 5.2e-17 92.0 161 37.3
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 5.2e-17 92.0 82 56.1
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 1.2e-16 90.9 68 60.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.2e-16 90.9 83 54.2
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.5e-16 90.5 90 57.8
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-16 89.4 69 58.0
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 3.4e-16 89.4 69 58.0
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 3.4e-16 89.4 69 58.0
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.4e-16 89.4 143 42.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 4.4e-16 89.0 156 40.4
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 4.4e-16 89.0 110 43.6
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.7e-16 88.6 139 43.9
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 9.8e-16 87.8 87 52.9
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 9.8e-16 87.8 71 56.3
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 9.8e-16 87.8 111 50.5
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.3e-15 87.4 103 48.5
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.3e-15 87.4 86 58.1
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.3e-15 87.4 94 50.0
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 1.7e-15 87.0 96 45.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.7e-15 87.0 93 48.4
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 1.7e-15 87.0 105 51.4
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.2e-15 86.7 152 33.6
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 2.2e-15 86.7 83 47.0
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.2e-15 86.7 110 43.6
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 2.2e-15 86.7 181 37.6
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.2e-15 86.7 122 45.1
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 2.8e-15 86.3 87 51.7
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.7e-15 85.9 162 36.4
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.3e-15 85.1 111 49.5
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 8.3e-15 84.7 95 47.4
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 8.3e-15 84.7 104 44.2
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 8.3e-15 84.7 175 36.6
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.1e-14 84.3 104 45.2
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.1e-14 82.8 147 40.1
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 3.1e-14 82.8 154 40.3
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 4.1e-14 82.4 124 41.9
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 5.4e-14 82.0 151 33.1
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 5.4e-14 82.0 110 48.2
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 5.4e-14 82.0 104 49.0
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.0e-14 81.6 86 47.7
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 7.0e-14 81.6 86 50.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.6e-13 80.5 54 63.0
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 2.7e-13 79.7 145 39.3
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 3.5e-13 79.3 145 40.0
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 3.5e-13 79.3 75 56.0
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 5.9e-13 78.6 104 46.2
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 5.9e-13 78.6 76 51.3
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 7.8e-13 78.2 66 59.1
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.0e-12 77.8 95 42.1
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.0e-12 77.8 95 42.1
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-12 77.8 95 42.1
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.3e-12 77.4 95 42.1
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.3e-12 77.4 164 39.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.3e-12 77.4 90 48.9
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 6.6e-12 75.1 164 34.1
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 8.6e-12 74.7 79 50.6
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 8.6e-12 74.7 183 31.7
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.5e-11 73.9 150 36.7
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 1.5e-11 73.9 75 48.0
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 1.9e-11 73.6 89 42.7
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.3e-11 72.8 100 45.0
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 4.3e-11 72.4 70 50.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 9.5e-11 71.2 127 37.0
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 2.8e-10 69.7 105 39.0
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 4.7e-10 68.9 165 36.4
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 4.7e-10 68.9 128 39.8
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 8.0e-10 68.2 85 42.4
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 8.0e-10 68.2 95 43.2
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 1.4e-09 67.4 90 42.2
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 1.4e-09 67.4 90 42.2
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 1.8e-09 67.0 152 36.8
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 2.3e-09 66.6 105 40.0
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 3.1e-09 66.2 108 40.7
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 4.0e-09 65.9 92 41.3
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 4.0e-09 65.9 92 41.3
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 5.2e-09 65.5 51 64.7
PGSC0003DMG400042312 Solanum tuberosum HOM05D004190 ORTHO05D018124 5.2e-09 65.5 72 45.8
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 5.2e-09 65.5 118 40.7
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 6.8e-09 65.1 128 35.2
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 6.8e-09 65.1 66 48.5
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.0e-08 63.5 107 37.4
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.6e-08 63.2 103 43.7
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.4e-08 62.8 158 32.3
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 3.4e-08 62.8 50 62.0
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 3.4e-08 62.8 182 30.2
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 4.4e-08 62.4 68 44.1
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.8e-08 62.0 76 39.5
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 5.8e-08 62.0 88 46.6
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 7.5e-08 61.6 72 44.4
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 9.8e-08 61.2 223 28.3
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.3e-07 60.8 77 41.6
Lj1P258T42 Lonicera japonica HOM05D004190 ORTHO05D004692 1.7e-07 60.5 133 36.1
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.2e-07 60.1 151 30.5
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.9e-07 59.7 60 45.0
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 3.7e-07 59.3 83 42.2
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 3.7e-07 59.3 161 33.5
A02p07130 Brassica napus HOM05D004190 ORTHO05D004692 6.4e-07 58.5 122 36.1
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 8.3e-07 58.2 58 50.0
Sopen10g021100 Solanum pennellii HOM05D004190 ORTHO05D018124 1.1e-06 57.8 63 47.6
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 1.9e-06 57.0 71 46.5
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 2.4e-06 56.6 84 39.3
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 4.1e-06 55.8 72 43.1
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 5.4e-06 55.5 72 43.1
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 9.2e-06 54.7 76 35.5


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