Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 7.8e-232 807.0 473 100.0
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 4.9e-218 761.1 478 93.7
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 1.0e-138 497.7 479 62.8
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 1.2e-112 411.0 475 61.5
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 5.4e-92 342.4 466 51.5
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 6.9e-87 325.5 475 51.2
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 6.9e-87 325.5 450 49.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 2.0e-86 323.9 472 50.6
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 1.4e-84 317.8 446 46.6
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 5.6e-81 305.8 530 44.9
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 1.2e-78 298.1 430 54.4
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 7.6e-78 295.4 498 43.6
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 1.2e-75 288.1 429 54.3
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 7.9e-75 285.4 362 49.4
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 1.0e-74 285.0 483 47.2
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 1.0e-74 285.0 433 46.0
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 1.5e-73 281.2 481 39.9
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 2.1e-72 277.3 348 46.8
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 2.1e-72 277.3 496 44.6
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 4.0e-71 273.1 348 45.7
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 3.4e-70 270.0 356 48.9
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.7e-69 267.7 478 41.0
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 4.9e-69 266.2 510 39.4
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 1.1e-68 265.0 346 44.5
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 1.4e-68 264.6 487 37.8
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 3.2e-68 263.5 460 46.7
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 3.5e-67 260.0 549 41.2
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.0e-66 258.5 355 45.1
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.8e-66 257.7 404 42.6
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 1.8e-66 257.7 486 45.9
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 3.9e-66 256.5 352 44.9
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 3.9e-66 256.5 474 42.2
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 3.3e-65 253.4 352 45.2
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 4.3e-65 253.1 479 38.4
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 4.3e-65 253.1 477 44.0
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 7.4e-65 252.3 309 50.8
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 1.6e-64 251.1 397 44.3
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 2.2e-64 250.8 355 42.8
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 2.2e-64 250.8 415 41.4
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 2.8e-64 250.4 477 44.9
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 6.3e-64 249.2 486 44.4
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 9.0e-63 245.4 350 43.1
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 1.2e-62 245.0 505 36.4
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 4.5e-62 243.0 456 39.9
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 7.7e-62 242.3 437 38.9
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 7.7e-62 242.3 420 39.0
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.0e-61 241.9 336 46.1
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 1.7e-61 241.1 436 42.4
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 2.2e-61 240.7 433 38.6
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.9e-61 240.4 420 38.8
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 5.0e-61 239.6 588 36.2
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 6.5e-61 239.2 408 44.6
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.1e-60 238.4 576 35.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 2.5e-60 237.3 539 37.5
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 2.5e-60 237.3 364 42.0
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 7.2e-60 235.7 424 38.2
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 1.2e-59 235.0 336 42.3
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 6.1e-59 232.6 344 45.3
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 6.1e-59 232.6 344 45.3
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 7.9e-59 232.3 461 42.1
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.0e-58 230.3 347 42.1
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 3.0e-58 230.3 577 38.6
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 5.1e-58 229.6 337 41.8
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 6.7e-58 229.2 445 36.6
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 1.1e-57 228.4 337 41.5
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.0e-57 227.6 577 35.5
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 2.5e-57 227.3 445 36.2
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 7.4e-57 225.7 561 37.1
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.7e-56 224.6 348 44.3
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 1.1e-55 221.9 286 47.6
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 1.4e-55 221.5 344 42.2
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 1.5e-54 218.0 414 37.4
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 3.4e-54 216.9 347 45.8
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 3.4e-54 216.9 350 45.4
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 4.5e-54 216.5 335 42.1
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.9e-53 213.8 344 45.1
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 1.1e-52 211.8 349 39.8
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 1.1e-52 211.8 343 40.2
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 1.4e-52 211.5 364 43.7
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 2.1e-51 207.6 435 38.9
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 3.6e-51 206.8 350 44.3
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 4.7e-51 206.5 255 48.6
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 6.1e-51 206.1 343 39.9
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 3.0e-50 203.8 412 37.4
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 6.7e-50 202.6 412 37.4
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 5.7e-49 199.5 332 47.9
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 1.3e-48 198.4 417 36.7
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 2.2e-48 197.6 409 37.7
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 3.7e-48 196.8 514 36.8
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 4.8e-48 196.4 423 35.2
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 1.8e-47 194.5 215 49.3
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 5.9e-46 189.5 215 48.4
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 3.8e-45 186.8 274 43.1
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 5.0e-45 186.4 417 35.7
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 5.5e-44 183.0 302 41.7
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 2.0e-41 174.5 292 40.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 3.7e-40 170.2 333 39.3
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.0e-37 162.2 353 34.3
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 1.0e-37 162.2 295 39.3
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 5.5e-36 156.4 151 50.3
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 2.3e-34 151.0 173 45.1
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 5.2e-34 149.8 159 52.2
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 5.7e-33 146.4 347 34.3
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 1.1e-31 142.1 280 36.1
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 1.2e-30 138.7 167 44.9
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 5.9e-30 136.3 205 38.5
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 1.4e-26 125.2 242 34.7
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 1.3e-24 118.6 235 33.6
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 6.3e-24 116.3 134 47.0
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 3.0e-18 97.4 70 65.7
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.0e-17 94.7 60 71.7
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 7.8e-14 82.8 60 61.7
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.1e-12 79.0 63 60.3
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 4.3e-12 77.0 150 35.3
QL03p062461 Quercus lobata HOM05D006873 ORTHO05D008668 1.8e-10 71.6 85 54.1


User provided reference genes

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