Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 8.5e-69 263.8 163 100.0
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 4.5e-62 241.5 164 93.9
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 6.5e-45 184.5 127 74.8
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 6.1e-43 177.9 128 69.5
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.8e-42 174.5 132 68.2
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.2e-41 173.7 127 70.1
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.6e-41 172.6 128 67.2
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 4.4e-41 171.8 127 68.5
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.4e-41 171.8 132 67.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 4.4e-41 171.8 129 69.0
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 5.7e-41 171.4 132 66.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 5.7e-41 171.4 127 68.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.7e-40 169.9 124 71.0
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 3.7e-40 168.7 127 67.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.1e-39 167.2 127 67.7
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.1e-39 167.2 128 68.0
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.8e-39 166.4 122 68.9
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 2.4e-39 166.0 128 67.2
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.1e-39 165.6 122 68.0
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 5.3e-39 164.9 130 66.9
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 5.3e-39 164.9 130 64.6
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 7.0e-39 164.5 130 66.9
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 7.0e-39 164.5 130 63.8
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-38 163.7 133 65.4
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.6e-38 163.3 122 69.7
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 1.6e-38 163.3 130 66.9
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.7e-38 162.5 122 68.9
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 2.7e-38 162.5 129 64.3
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.7e-38 162.5 135 63.0
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.5e-38 162.2 118 67.8
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.5e-38 161.8 130 66.2
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.9e-37 159.1 120 64.2
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 3.8e-37 158.7 133 63.2
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 8.5e-37 157.5 118 67.8
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 8.5e-37 157.5 126 62.7
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.1e-36 157.1 121 66.9
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 3.2e-36 155.6 129 60.5
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.2e-36 155.6 125 64.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.5e-36 154.8 121 62.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 5.5e-36 154.8 131 61.1
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.6e-35 153.3 128 64.1
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-35 153.3 128 61.7
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 1.6e-35 153.3 133 60.2
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 2.1e-35 152.9 128 64.8
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.7e-35 152.5 131 60.3
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.7e-35 152.5 125 63.2
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.6e-35 152.1 128 64.8
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 3.6e-35 152.1 128 60.2
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.4e-34 150.2 127 59.1
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 1.8e-34 149.8 128 64.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.8e-34 149.8 120 61.7
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.3e-34 149.4 130 56.9
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.3e-34 149.4 125 62.4
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 3.0e-34 149.1 126 60.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 4.0e-34 148.7 123 62.6
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 4.0e-34 148.7 128 62.5
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 5.2e-34 148.3 123 61.8
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 8.8e-34 147.5 132 56.1
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.2e-33 147.1 130 60.0
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.5e-33 146.7 126 59.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.5e-33 146.7 129 59.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.5e-33 146.7 126 59.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.0e-33 146.4 129 54.3
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 2.6e-33 146.0 120 63.3
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.6e-33 146.0 126 58.7
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.4e-33 145.2 121 61.2
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 4.4e-33 145.2 135 57.0
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 5.7e-33 144.8 127 61.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 5.7e-33 144.8 126 57.1
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 9.8e-33 144.1 130 57.7
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 9.8e-33 144.1 119 61.3
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 1.3e-32 143.7 133 57.1
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.3e-32 143.7 131 55.7
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.7e-32 143.3 145 55.9
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.7e-32 143.3 121 61.2
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.7e-32 143.3 125 59.2
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 2.8e-32 142.5 125 57.6
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 3.7e-32 142.1 116 62.9
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-31 140.6 132 58.3
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-31 140.2 130 59.2
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.4e-31 140.2 132 55.3
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.8e-31 139.8 129 58.9
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.8e-31 139.8 129 58.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 2.4e-31 139.4 130 58.5
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 3.1e-31 139.0 127 59.8
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 3.1e-31 139.0 146 53.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 5.4e-31 138.3 119 58.8
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 1.6e-30 136.7 118 60.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 1.6e-30 136.7 118 60.2
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.0e-30 136.3 131 54.2
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 2.0e-30 136.3 95 68.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.0e-30 136.3 130 60.8
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 5.9e-30 134.8 128 56.2
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 1.7e-29 133.3 128 56.2
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.7e-29 133.3 127 53.5
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 1.7e-29 133.3 132 53.8
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 2.3e-29 132.9 125 55.2
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 2.9e-29 132.5 132 53.8
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 2.9e-29 132.5 132 53.8
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 3.8e-29 132.1 89 73.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 6.6e-29 131.3 124 56.5
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 8.6e-29 131.0 132 53.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.1e-28 130.6 123 57.7
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-28 129.8 128 54.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.9e-28 129.8 131 55.7
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.5e-28 129.4 119 58.0
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.5e-28 129.4 129 53.5
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 3.3e-28 129.0 115 56.5
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 5.5e-28 128.3 128 54.7
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 5.5e-28 128.3 128 54.7
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 1.2e-27 127.1 92 67.4
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.6e-27 126.7 146 50.0
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 4.7e-27 125.2 94 66.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-26 122.9 129 53.5
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-26 122.9 129 53.5
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-26 122.9 129 53.5
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 2.3e-26 122.9 119 51.3
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 4.0e-26 122.1 88 67.0
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 4.0e-26 122.1 128 55.5
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.2e-25 120.6 118 50.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-25 120.6 94 61.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.5e-25 120.2 83 66.3
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.5e-25 120.2 128 50.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 3.4e-25 119.0 128 50.0
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 3.4e-25 119.0 129 48.8
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 5.7e-25 118.2 75 74.7
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 7.5e-25 117.9 141 46.8
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 2.2e-24 116.3 94 58.5
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.7e-24 115.5 92 63.0
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 8.3e-24 114.4 101 54.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-23 113.6 125 52.8
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-23 112.8 113 54.0
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.0e-22 109.8 115 52.2
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.0e-21 107.5 122 46.7
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.1e-20 104.0 112 54.5
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.1e-20 104.0 132 42.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.1e-20 104.0 82 64.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.5e-20 102.8 97 54.6
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.5e-20 102.8 127 47.2
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 6.8e-18 94.7 94 51.1
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 8.9e-18 94.4 122 44.3
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.7e-16 90.1 66 63.6
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 3.7e-16 89.0 128 42.2
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 9.2e-15 84.3 89 48.3
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.6e-14 82.0 131 42.0
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 4.6e-14 82.0 123 40.7
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.6e-14 82.0 55 69.1
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 7.8e-14 81.3 73 57.5
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.9e-13 79.0 79 48.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 7.3e-12 74.7 127 38.6
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.1e-10 70.9 121 42.1
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.5e-09 67.0 71 49.3
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 2.9e-08 62.8 90 38.9
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 2.4e-07 59.7 77 41.6
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 4.1e-07 58.9 43 62.8
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 2.1e-06 56.6 38 68.4
Hma1.2p1_0549F.1_g176960 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 6.0e-06 55.1 40 67.5


User provided reference genes

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