Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005443 Carpinus fangiana HOM05D003404 ORTHO05D004052 1.0e-63 246.5 121 100.0
Cfa012819 Carpinus fangiana HOM05D003404 ORTHO05D004052 6.1e-40 167.5 85 97.6
CANSAT21G0984 Cannabis sativa HOM05D003404 ORTHO05D004052 9.5e-25 117.1 97 68.0
Atru.chr6.225 Acer truncatum HOM05D003404 ORTHO05D004052 2.1e-24 115.9 99 66.7
Cfa004441 Carpinus fangiana HOM05D003404 ORTHO05D004052 2.8e-24 115.5 62 95.2
Lalb_Chr18g0061171 Lupinus albus HOM05D003404 ORTHO05D004052 2.8e-24 115.5 96 68.8
Atru.chr8.1282 Acer truncatum HOM05D003404 ORTHO05D004052 3.6e-24 115.2 64 90.6
MD01G1232300 Malus domestica HOM05D003404 ORTHO05D004052 3.6e-24 115.2 90 70.0
COL.COLO4_31122 Corchorus olitorius HOM05D003404 ORTHO05D004052 4.7e-24 114.8 65 89.2
Potri.003G000500 Populus trichocarpa HOM05D003404 ORTHO05D004052 4.7e-24 114.8 96 67.7
Sabra03G0000100 Salix brachista HOM05D003404 ORTHO05D004052 4.7e-24 114.8 96 67.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 6.2e-24 114.4 65 89.2
CsaV3_3G006660 Cucumis sativus L. HOM05D003404 ORTHO05D004052 8.0e-24 114.0 66 87.9
QL02p103380 Quercus lobata HOM05D003404 ORTHO05D004052 8.0e-24 114.0 62 93.5
ClCG10G007400 Citrullus lanatus HOM05D003404 ORTHO05D004052 1.0e-23 113.6 62 93.5
MELO3C016463.2 Cucumis melo HOM05D003404 ORTHO05D004052 1.0e-23 113.6 62 93.5
Os02g0167700 Oryza sativa ssp. japonica HOM05D003404 ORTHO05D004052 1.0e-23 113.6 62 90.3
Sed0011322 Sechium edule HOM05D003404 ORTHO05D004052 1.0e-23 113.6 62 93.5
TWI14G1077 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 1.0e-23 113.6 92 66.3
Duzib192G0569 Durio zibethinus HOM05D003404 ORTHO05D004052 1.4e-23 113.2 62 91.9
Gohir.A06G144600 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.4e-23 113.2 62 91.9
Gohir.D06G150300 Gossypium hirsutum HOM05D003404 ORTHO05D004052 1.4e-23 113.2 62 91.9
Gorai.010G175500 Gossypium raimondii HOM05D003404 ORTHO05D004052 1.4e-23 113.2 62 91.9
Thecc.06G019500 Theobroma cacao HOM05D003404 ORTHO05D004052 1.4e-23 113.2 62 91.9
arahy.Tifrunner.gnm1.ann1.F0HWYS Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-23 112.8 97 67.0
arahy.Tifrunner.gnm1.ann1.TT7XH0 Arachis hypogaea HOM05D003404 ORTHO05D004052 1.8e-23 112.8 97 67.0
Duzib235G1119 Durio zibethinus HOM05D003404 ORTHO05D004052 1.8e-23 112.8 62 90.3
MD07G1304100 Malus domestica HOM05D003404 ORTHO05D004052 1.8e-23 112.8 62 90.3
Manes.07G030800 Manihot esculenta HOM05D003404 ORTHO05D004052 1.8e-23 112.8 62 91.9
Prupe.2G322700 Prunus persica HOM05D003404 ORTHO05D004052 1.8e-23 112.8 62 91.9
Dinv29635 Davidia involucrata HOM05D003404 ORTHO05D004052 2.3e-23 112.5 66 87.9
Phvul.003G076300 Phaseolus vulgaris HOM05D003404 ORTHO05D004052 2.3e-23 112.5 90 70.0
TWI59G0557 Tripterygium wilfordii HOM05D003404 ORTHO05D004052 2.3e-23 112.5 92 65.2
DCAR_001727 Daucus carota HOM05D003404 ORTHO05D004052 3.1e-23 112.1 61 90.2
Glyma.07G272400 Glycine max HOM05D003404 ORTHO05D004052 3.1e-23 112.1 95 67.4
Glyma.17G002000 Glycine max HOM05D003404 ORTHO05D004052 3.1e-23 112.1 90 70.0
VMungo1215G2990 Vigna mungo HOM05D003404 ORTHO05D004052 3.1e-23 112.1 90 70.0
Zm00001eb178910 Zea mays HOM05D003404 ORTHO05D004052 3.1e-23 112.1 62 88.7
Zm00001eb207390 Zea mays HOM05D003404 ORTHO05D004052 3.1e-23 112.1 62 88.7
Ciclev10000063m.g Citrus clementina HOM05D003404 ORTHO05D004052 5.2e-23 111.3 90 68.9
FvH4_7g33400 Fragaria vesca HOM05D003404 ORTHO05D004052 5.2e-23 111.3 62 91.9
FAN01G2685 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.2e-23 111.3 62 91.9
FAN03G0122 Fragaria x ananassa HOM05D003404 ORTHO05D004052 5.2e-23 111.3 62 91.9
Rhsim05G0115300 Rhododendron simsii HOM05D003404 ORTHO05D004052 5.2e-23 111.3 66 86.4
RcHm_v2.0_Chr1g0383371 Rosa chinensis HOM05D003404 ORTHO05D004052 5.2e-23 111.3 62 91.9
GSVIVG01023143001 Vitis vinifera HOM05D003404 ORTHO05D004052 5.2e-23 111.3 62 91.9
Dinv29680 Davidia involucrata HOM05D003404 ORTHO05D004052 6.8e-23 110.9 66 86.4
HanXRQChr15g0469691 Helianthus annuus HOM05D003404 ORTHO05D004052 6.8e-23 110.9 61 90.2
Lalb_Chr15g0090861 Lupinus albus HOM05D003404 ORTHO05D004052 6.8e-23 110.9 62 90.3
Lsat_1_v5_gn_9_83361 Lactuca sativa HOM05D003404 ORTHO05D004052 8.9e-23 110.5 61 88.5
Solyc01g103010.4 Solanum lycopersicum HOM05D003404 ORTHO05D004052 8.9e-23 110.5 61 88.5
Sopen01g045420 Solanum pennellii HOM05D003404 ORTHO05D004052 8.9e-23 110.5 61 88.5
Eucgr.G00074 Eucalyptus grandis HOM05D003404 ORTHO05D004052 1.2e-22 110.2 62 90.3
PGR042G3714 Punica granatum HOM05D003404 ORTHO05D004052 1.2e-22 110.2 66 84.8
Actinidia26195 Actinidia chinensis HOM05D003404 ORTHO05D004052 1.5e-22 109.8 66 84.8
CSS0015679 Camellia sinensis var. sinensis HOM05D003404 ORTHO05D004052 1.5e-22 109.8 66 84.8
Ca_13528_v3 Cicer arietinum L. HOM05D003404 ORTHO05D004052 1.5e-22 109.8 106 62.3
Nn5g27178 Nelumbo nucifera HOM05D003404 ORTHO05D004052 1.5e-22 109.8 62 88.7
PSO210G7577 Papaver somniferum HOM05D003404 ORTHO05D004052 1.5e-22 109.8 87 67.8
PSO761G0035 Papaver somniferum HOM05D003404 ORTHO05D004052 1.5e-22 109.8 87 67.8
THA.LOC104801780 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.5e-22 109.8 62 85.5
THA.LOC104805135 Tarenaya hassleriana HOM05D003404 ORTHO05D004052 1.5e-22 109.8 62 85.5
Ah.03g136760 Amaranthus hybridus HOM05D003404 ORTHO05D004052 2.0e-22 109.4 66 86.4
Cc02_g23620 Coffea canephora HOM05D003404 ORTHO05D004052 2.0e-22 109.4 61 88.5
Lj4g0008829 Lotus japonicus HOM05D003404 ORTHO05D004052 2.0e-22 109.4 107 59.8
C02p50810 Brassica napus HOM05D003404 ORTHO05D004052 2.6e-22 109.0 68 77.9
CAN.G855.55 Capsicum annuum HOM05D003404 ORTHO05D004052 2.6e-22 109.0 61 86.9
Nitab4.5_0003247g0080 Nicotiana tabacum HOM05D003404 ORTHO05D004052 2.6e-22 109.0 61 86.9
Nitab4.5_0007689g0020 Nicotiana tabacum HOM05D003404 ORTHO05D004052 2.6e-22 109.0 61 86.9
Aa31LG2G7580 Aethionema arabicum HOM05D003404 ORTHO05D004052 3.4e-22 108.6 63 84.1
Aqoxy5G01845 Aquilegia oxysepala HOM05D003404 ORTHO05D004052 3.4e-22 108.6 62 87.1
ECA236G3319 Erigeron canadensis HOM05D003404 ORTHO05D004052 3.4e-22 108.6 90 66.7
Medtr4g134620 Medicago truncatula HOM05D003404 ORTHO05D004052 3.4e-22 108.6 90 67.8
Psat4g002640 Pisum sativum HOM05D003404 ORTHO05D004052 3.4e-22 108.6 90 67.8
Potri.004G229300 Populus trichocarpa HOM05D003404 ORTHO05D004052 3.4e-22 108.6 90 66.7
TPR.G6014 Trifolium pratense HOM05D003404 ORTHO05D004052 3.4e-22 108.6 90 67.8
vmacro19829 Vaccinium macrocarpon HOM05D003404 ORTHO05D004052 3.4e-22 108.6 61 90.2
BolC2t11162H Brassica oleracea HOM05D003404 ORTHO05D004052 4.4e-22 108.2 68 77.9
arahy.Tifrunner.gnm1.ann1.4Z0G7J Arachis hypogaea HOM05D003404 ORTHO05D004052 5.8e-22 107.8 90 68.9
HanXRQChr04g0110261 Helianthus annuus HOM05D003404 ORTHO05D004052 5.8e-22 107.8 61 88.5
CiPaw.05G001400 Carya illinoinensis HOM05D003404 ORTHO05D004052 7.5e-22 107.5 62 88.7
MBI06_g16624_MAGBIO Magnolia biondii HOM05D003404 ORTHO05D004052 7.5e-22 107.5 65 86.2
AL5G11830 Arabidopsis lyrata HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
AT2G02560 Arabidopsis thaliana HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
BcaC06g31227 Brassica carinata HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
C07p33270 Brassica napus HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
BolC7t43839H Brassica oleracea HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
Carub.0005s0156 Capsella rubella HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
Thhalv10003535m.g Eutrema salsugineum HOM05D003404 ORTHO05D004052 9.8e-22 107.1 62 83.9
BcaC06g31225 Brassica carinata HOM05D003404 ORTHO05D004052 1.3e-21 106.7 62 82.3
AUR62042960 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.3e-21 106.7 66 84.8
AUR62043067 Chenopodium quinoa HOM05D003404 ORTHO05D004052 1.3e-21 106.7 66 84.8
TAR376G0925 Trochodendron aralioides HOM05D003404 ORTHO05D004052 1.3e-21 106.7 62 90.3
CARHR145090 Cardamine hirsuta HOM05D003404 ORTHO05D004052 2.2e-21 105.9 62 82.3
Sabra01G0174500 Salix brachista HOM05D003404 ORTHO05D004052 2.2e-21 105.9 90 66.7
EL10Ac6g13982 Beta vulgaris HOM05D003404 ORTHO05D004052 2.9e-21 105.5 66 84.8
ATR1089G109 Amborella trichopoda HOM05D003404 ORTHO05D004052 3.7e-21 105.1 64 81.2
BcaB07g30328 Brassica carinata HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 83.6
BcaC03g17156 Brassica carinata HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 83.6
A02p33040 Brassica napus HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 83.6
BraA02t08325Z Brassica rapa HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 83.6
Sp2g13790 Schrenkiella parvula HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 83.6
unitig_27.g24934 Utricularia gibba HOM05D003404 ORTHO05D004052 6.4e-21 104.4 61 85.2
Migut.B00720 Erythranthe guttata HOM05D003404 ORTHO05D004052 8.3e-21 104.0 61 82.0
SGA_v2.0_scaffold254G45235 Striga asiatica HOM05D003404 ORTHO05D004052 1.1e-20 103.6 63 84.1
MSTRG.16466 Avicennia marina HOM05D003404 ORTHO05D004052 1.9e-20 102.8 61 83.6
Sc12g0008780 Simmondsia chinensis HOM05D003404 ORTHO05D004052 1.9e-20 102.8 90 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3869 Anthoceros agrestis HOM05D003404 ORTHO05D004052 9.2e-20 100.5 88 60.2
CDE05G1207 Ceratophyllum demersum HOM05D003404 ORTHO05D004052 2.7e-19 99.0 90 61.1
Atru.chr11.445 Acer truncatum HOM05D000107 ORTHO05D000062 4.6e-19 98.2 62 85.5
HPP92_001482 Vanilla planifolia HOM05D003404 ORTHO05D004052 1.0e-18 97.1 90 61.1
Mapoly0029s0003 Marchantia polymorpha HOM05D003404 ORTHO05D004052 1.3e-18 96.7 107 52.3
SMO364G0878 Selaginella moellendorffii HOM05D003404 ORTHO05D004052 5.0e-18 94.7 97 53.6
Peaxi162Scf00011g01927 Petunia axillaris HOM05D003404 ORTHO05D004052 8.6e-18 94.0 55 83.6
Pp3c4_6460 Physcomitrium patens HOM05D003404 ORTHO05D004052 4.3e-17 91.7 66 66.7
A06p43570 Brassica napus HOM05D003404 ORTHO05D004052 1.2e-16 90.1 54 81.5
BraA06t27242Z Brassica rapa HOM05D003404 ORTHO05D004052 1.2e-16 90.1 54 81.5
Pp3c8_3260 Physcomitrium patens HOM05D003404 ORTHO05D004052 1.6e-16 89.7 62 67.7
SHI05020 Sapria himalayana HOM05D003404 ORTHO05D004052 1.4e-15 86.7 89 53.9
CBR_g18772 Chara braunii HOM05D003404 ORTHO05D004052 9.8e-14 80.5 90 48.9
Zm00001eb006600 Zea mays HOM05D003404 ORTHO05D004052 1.3e-10 70.1 62 62.9
Lj5C285G4 Lonicera japonica HOM05D003404 ORTHO05D004052 8.6e-10 67.4 87 47.1
TPR.G18134 Trifolium pratense HOM05D003404 ORTHO05D004052 1.2e-08 63.5 80 55.0
Haze_09982 Corylus avellana HOM05D003404 ORTHO05D004052 4.7e-08 61.6 34 91.2
SEGI_11687 Sequoiadendron giganteum HOM05D003404 ORTHO05D000003 3.1e-07 58.9 39 74.4
Prupe.6G174400 Prunus persica HOM05D003404 ORTHO05D004052 3.4e-06 55.5 51 62.7
Haze_26135 Corylus avellana HOM05D003404 ORTHO05D004052 9.9e-06 53.9 53 49.1


User provided reference genes

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