Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 1.3e-171 606.3 309 100.0
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 1.8e-157 559.3 289 98.6
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-149 532.7 308 88.6
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 1.9e-149 532.7 308 88.6
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 1.0e-147 526.9 310 87.4
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 1.6e-132 476.5 310 79.7
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 1.6e-129 466.5 316 77.8
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 2.8e-129 465.7 316 78.2
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 4.0e-128 461.8 312 77.2
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 8.9e-128 460.7 311 76.5
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.2e-127 460.3 315 76.8
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.6e-127 459.1 316 76.3
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 2.6e-127 459.1 316 76.6
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 3.4e-127 458.8 312 77.2
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.4e-127 458.8 312 77.2
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 3.4e-127 458.8 310 78.7
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 4.4e-127 458.4 313 76.4
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 5.8e-127 458.0 316 75.9
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 7.6e-127 457.6 308 78.2
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-125 453.8 313 77.0
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 2.4e-125 452.6 316 75.9
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 3.2e-125 452.2 311 75.9
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 4.2e-125 451.8 314 75.8
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 1.2e-124 450.3 310 75.2
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 1.6e-124 449.9 314 75.2
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.6e-124 449.9 310 77.4
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 3.5e-124 448.7 316 75.9
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 6.0e-124 448.0 316 75.0
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 1.3e-123 446.8 311 75.6
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 1.7e-123 446.4 312 75.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 2.3e-123 446.0 312 75.3
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.0e-123 445.7 311 74.3
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 3.0e-123 445.7 313 75.7
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 6.6e-123 444.5 310 73.2
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 1.5e-122 443.4 310 75.8
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 2.5e-122 442.6 313 75.4
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 5.6e-122 441.4 312 74.0
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 4.8e-121 438.3 310 72.9
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 6.2e-121 438.0 312 74.0
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.5e-119 433.3 311 73.6
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.4e-119 431.8 311 73.3
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 5.8e-119 431.4 311 73.3
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.6e-119 431.0 310 73.9
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 7.6e-119 431.0 310 73.9
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 7.6e-119 431.0 311 73.3
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 9.9e-119 430.6 310 73.9
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.9e-118 429.1 311 73.0
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 2.9e-118 429.1 314 72.3
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 4.9e-118 428.3 311 73.3
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.4e-118 427.6 311 73.0
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 1.1e-117 427.2 308 74.4
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.1e-117 427.2 316 72.2
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 3.2e-117 425.6 312 72.8
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 5.4e-117 424.9 311 72.7
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 4.6e-116 421.8 311 73.0
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 1.0e-115 420.6 315 72.7
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.3e-115 420.2 311 71.7
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 1.3e-115 420.2 311 71.7
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 3.9e-115 418.7 307 71.3
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.5e-114 416.8 311 70.7
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 1.9e-114 416.4 311 71.7
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 2.5e-114 416.0 320 70.3
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 5.6e-114 414.8 310 72.3
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 7.3e-114 414.5 310 71.6
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 6.2e-113 411.4 311 70.1
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.1e-112 410.6 311 70.1
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 1.5e-111 406.8 270 79.6
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.4e-111 405.6 311 71.7
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 4.5e-111 405.2 309 68.9
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 7.6e-111 404.4 317 68.8
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.7e-110 403.3 346 63.6
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 2.9e-110 402.5 351 63.0
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 3.8e-110 402.1 310 68.7
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 3.8e-110 402.1 311 70.1
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 4.9e-110 401.7 312 68.6
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 8.4e-110 401.0 306 70.6
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 1.1e-109 400.6 310 70.0
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.9e-109 399.8 310 69.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 1.9e-109 399.8 309 68.9
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 3.2e-109 399.1 310 68.7
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 4.6e-108 395.2 309 68.6
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.6e-108 395.2 310 69.0
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.3e-107 393.7 310 68.7
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.3e-107 393.7 310 68.7
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 3.0e-107 392.5 309 67.6
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 5.1e-107 391.7 309 68.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 8.7e-107 391.0 310 68.1
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 8.7e-107 391.0 310 68.1
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 8.7e-107 391.0 310 68.1
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 1.1e-106 390.6 310 68.4
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 1.9e-106 389.8 310 67.1
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 5.6e-106 388.3 311 66.9
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 1.3e-105 387.1 309 67.0
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 2.4e-104 382.9 310 68.4
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 2.0e-103 379.8 312 65.7
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 6.5e-102 374.8 221 86.0
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 2.5e-101 372.9 314 65.3
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 2.5e-98 362.8 287 68.6
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 4.3e-98 362.1 279 70.6
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 1.6e-97 360.1 336 59.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 3.7e-97 359.0 344 58.7
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.2e-95 354.0 251 74.1
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 2.0e-95 353.2 335 59.4
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.0e-95 353.2 340 58.5
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.2e-93 345.9 267 69.7
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 7.9e-92 341.3 291 64.9
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 3.9e-91 339.0 314 61.8
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 7.4e-90 334.7 201 81.6
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 1.3e-89 334.0 203 82.3
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.6e-89 333.6 267 67.4
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-86 323.9 315 56.2
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.4e-85 320.5 310 60.6
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 1.9e-85 320.1 306 56.5
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 1.2e-84 317.4 310 58.7
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 5.7e-82 308.5 309 54.7
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 9.1e-80 301.2 185 82.2
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 8.5e-78 294.7 277 58.5
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 4.1e-64 249.2 297 50.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 9.1e-64 248.1 192 70.3
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.3e-59 233.4 191 70.2
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 3.0e-59 233.0 232 56.9
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 1.3e-57 227.6 249 57.4
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 9.1e-56 221.5 381 40.9
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.2e-50 204.5 192 63.0
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 1.5e-45 187.6 117 82.1
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 2.5e-45 186.8 310 42.6
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 4.3e-45 186.0 234 44.9
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 6.1e-44 182.2 272 46.0
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 2.3e-38 163.7 220 44.5
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.1e-37 161.4 95 87.4
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 4.3e-37 159.5 190 51.6
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.4e-35 154.5 122 69.7
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 2.6e-34 150.2 96 82.3
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 2.9e-33 146.7 140 62.9
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 2.4e-32 143.7 93 82.8
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 3.2e-32 143.3 119 63.0
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 1.2e-31 141.4 198 42.9
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 1.6e-31 141.0 275 40.4
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-31 139.0 125 59.2
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-31 139.0 125 59.2
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 4.0e-27 126.3 80 81.2
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 2.7e-23 113.6 99 64.6
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 1.3e-22 111.3 231 38.1
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 8.1e-20 102.1 110 59.1
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 3.9e-14 83.2 128 47.7
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.5e-13 81.3 63 73.0
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 2.9e-09 67.0 42 66.7
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 1.4e-08 64.7 40 70.0
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.9e-08 64.3 43 72.1
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 2.1e-07 60.8 62 58.1


User provided reference genes

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